Wall clock time and date at job start Mon Mar 30 2020 06:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36808 * 125.06850 * 2 1 4 4 C 1.34248 * 109.92664 * 180.02562 * 3 2 1 5 5 C 1.46486 * 107.00143 * 359.97438 * 4 3 2 6 6 C 1.39662 * 134.01919 * 180.02562 * 5 4 3 7 7 C 1.36615 * 119.78773 * 180.02562 * 6 5 4 8 8 C 1.38834 * 120.53803 * 359.96763 * 7 6 5 9 9 C 1.50694 * 119.67515 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46891 * 215.02020 * 9 8 7 11 11 O 1.42898 * 109.47287 * 335.01586 * 9 8 7 12 12 C 1.50699 * 109.47255 * 95.01766 * 9 8 7 13 13 H 1.07994 * 120.00286 * 0.02562 * 12 9 8 14 14 C 1.37881 * 119.99922 * 179.97438 * 12 9 8 15 15 N 1.31522 * 120.00020 * 180.02562 * 14 12 9 16 16 Si 1.86796 * 120.00185 * 0.02562 * 14 12 9 17 17 H 1.48502 * 109.47526 * 89.99713 * 16 14 12 18 18 H 1.48500 * 109.47286 * 209.99913 * 16 14 12 19 19 H 1.48503 * 109.46953 * 329.99939 * 16 14 12 20 20 C 1.37852 * 120.64703 * 0.02562 * 8 7 6 21 21 Cl 1.73600 * 120.11741 * 179.97438 * 20 8 7 22 22 C 1.37732 * 125.06394 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.46980 * 269.97365 * 1 2 3 24 24 H 1.08998 * 109.46996 * 29.97657 * 1 2 3 25 25 H 1.09005 * 109.46723 * 149.97590 * 1 2 3 26 26 H 1.07999 * 125.04039 * 0.04419 * 3 2 1 27 27 H 1.07998 * 126.49887 * 180.26767 * 4 3 2 28 28 H 1.08002 * 120.10730 * 359.95799 * 6 5 4 29 29 H 1.08005 * 119.73262 * 179.97438 * 7 6 5 30 30 H 0.96700 * 114.00036 * 60.00521 * 11 9 8 31 31 H 0.96994 * 119.99809 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.1197 0.0000 4 6 3.5469 0.7691 -0.0006 5 6 3.5945 -0.6950 -0.0003 6 6 4.6297 -1.6324 -0.0002 7 6 4.3370 -2.9669 -0.0005 8 6 3.0179 -3.3997 -0.0003 9 6 2.7172 -4.8763 -0.0012 10 1 1.8198 -5.0640 -0.5907 11 8 3.8186 -5.5864 -0.5712 12 6 2.4958 -5.3448 1.4139 13 1 2.5654 -4.6434 2.2321 14 6 2.2034 -6.6689 1.6640 15 7 2.0096 -7.0776 2.8989 16 14 2.0822 -7.8821 0.2488 17 1 3.4167 -8.4824 -0.0043 18 1 1.1153 -8.9539 0.5970 19 1 1.6184 -7.1743 -0.9716 20 6 1.9805 -2.4919 -0.0002 21 17 0.3361 -3.0484 -0.0006 22 6 2.2563 -1.1274 -0.0005 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.8836 2.1353 0.0007 27 1 4.3938 1.4393 0.0034 28 1 5.6584 -1.3035 -0.0010 29 1 5.1383 -3.6910 -0.0009 30 1 4.6524 -5.4654 -0.0968 31 1 1.8043 -8.0091 3.0748 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259450625.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:23 Heat of formation + Delta-G solvation = -11.644908 kcal Electronic energy + Delta-G solvation = -17711.401628 eV Core-core repulsion = 14790.547441 eV Total energy + Delta-G solvation = -2920.854187 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.22657 -39.31944 -37.44785 -36.79862 -34.46963 -33.56803 -31.41438 -30.77994 -28.47679 -27.05469 -24.66480 -23.40901 -21.85052 -20.96535 -19.50634 -18.14715 -17.36393 -17.22267 -16.90085 -16.32678 -15.93424 -15.43748 -14.98990 -14.62622 -14.47541 -14.15051 -14.11143 -13.66669 -13.49598 -13.18945 -12.95929 -12.84196 -12.65903 -12.38767 -11.87514 -11.82882 -11.61177 -11.12955 -10.86407 -10.68058 -10.28492 -9.06798 -8.45449 -8.34896 -6.48946 0.09379 0.61800 1.27204 1.39445 1.41836 1.56534 1.80262 1.92406 2.37023 2.86000 2.97876 3.68820 3.85299 3.99430 4.04877 4.07014 4.38927 4.39886 4.45049 4.65622 4.69380 4.80924 4.92319 5.01325 5.12090 5.39105 5.51010 5.68519 5.76207 5.85970 6.08577 6.18006 6.44499 6.61228 7.08082 7.28638 8.78917 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.027911 B = 0.007156 C = 0.006269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.960584 B = 3912.076220 C = 4465.135780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.487 5.487 3 C 0.057 3.943 4 C -0.212 4.212 5 C -0.129 4.129 6 C -0.064 4.064 7 C -0.143 4.143 8 C -0.070 4.070 9 C 0.235 3.765 10 H 0.063 0.937 11 O -0.582 6.582 12 C -0.535 4.535 13 H 0.035 0.965 14 C 0.037 3.963 15 N -0.933 5.933 16 Si 0.963 3.037 17 H -0.268 1.268 18 H -0.300 1.300 19 H -0.266 1.266 20 C -0.062 4.062 21 Cl -0.080 7.080 22 C 0.079 3.921 23 H 0.070 0.930 24 H 0.118 0.882 25 H 0.073 0.927 26 H 0.214 0.786 27 H 0.176 0.824 28 H 0.158 0.842 29 H 0.143 0.857 30 H 0.376 0.624 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.782 17.363 -7.885 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.170 5.170 3 C -0.068 4.068 4 C -0.236 4.236 5 C -0.135 4.135 6 C -0.082 4.082 7 C -0.162 4.162 8 C -0.072 4.072 9 C 0.177 3.823 10 H 0.081 0.919 11 O -0.390 6.390 12 C -0.572 4.572 13 H 0.053 0.947 14 C -0.163 4.163 15 N -0.572 5.572 16 Si 0.791 3.209 17 H -0.193 1.193 18 H -0.228 1.228 19 H -0.191 1.191 20 C -0.092 4.092 21 Cl -0.051 7.051 22 C -0.029 4.029 23 H 0.089 0.911 24 H 0.137 0.863 25 H 0.091 0.909 26 H 0.231 0.769 27 H 0.194 0.806 28 H 0.176 0.824 29 H 0.160 0.840 30 H 0.226 0.774 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.236 17.044 -8.198 18.914 hybrid contribution -0.213 -0.984 0.411 1.087 sum -0.448 16.060 -7.787 17.854 Atomic orbital electron populations 1.22368 0.75839 1.05675 1.03819 1.44081 1.06955 1.03688 1.62296 1.22540 0.90032 0.91947 1.02231 1.21986 0.97530 0.90976 1.13128 1.19622 0.90840 0.95612 1.07397 1.20607 0.99477 0.90967 0.97180 1.20592 0.94768 0.96791 1.04066 1.20410 0.93194 0.96508 0.97076 1.18671 0.86668 0.84257 0.92694 0.91906 1.86363 1.21103 1.73280 1.58284 1.21374 1.49374 0.94552 0.91920 0.94651 1.25694 0.92719 1.00188 0.97744 1.70051 1.48496 1.17375 1.21316 0.85450 0.78048 0.77741 0.79694 1.19316 1.22804 1.19055 1.19688 0.85439 0.90337 1.13702 1.98287 1.19645 1.89943 1.97208 1.18002 0.92136 0.86631 1.06086 0.91092 0.86346 0.90856 0.76949 0.80640 0.82441 0.83951 0.77411 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.34 10.49 127.77 1.34 2.68 16 2 N -0.49 -13.11 3.18 -539.19 -1.71 -14.82 16 3 C 0.06 1.15 11.29 83.01 0.94 2.09 16 4 C -0.21 -4.86 11.08 23.51 0.26 -4.60 16 5 C -0.13 -4.10 6.37 -20.20 -0.13 -4.23 16 6 C -0.06 -1.98 10.05 22.23 0.22 -1.75 16 7 C -0.14 -5.20 9.23 22.03 0.20 -4.99 16 8 C -0.07 -3.02 5.01 -19.82 -0.10 -3.12 16 9 C 0.23 11.50 2.04 29.10 0.06 11.56 16 10 H 0.06 3.26 6.15 -2.39 -0.01 3.25 16 11 O -0.58 -26.33 10.68 -148.98 -1.59 -27.92 16 12 C -0.53 -30.64 9.33 25.60 0.24 -30.40 16 13 H 0.04 2.27 7.98 -2.91 -0.02 2.25 16 14 C 0.04 2.16 5.47 84.65 0.46 2.62 16 15 N -0.93 -58.13 13.96 21.45 0.30 -57.83 16 16 Si 0.96 48.24 26.18 68.60 1.80 50.03 16 17 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 18 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 19 H -0.27 -13.17 6.54 99.48 0.65 -12.52 16 20 C -0.06 -2.57 6.33 22.41 0.14 -2.43 16 21 Cl -0.08 -3.19 24.46 -2.72 -0.07 -3.25 16 22 C 0.08 2.79 6.78 39.04 0.26 3.05 16 23 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.07 1.80 5.72 -2.38 -0.01 1.79 16 26 H 0.21 2.09 8.06 -2.91 -0.02 2.07 16 27 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 28 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 29 H 0.14 4.56 6.36 -2.91 -0.02 4.54 16 30 H 0.38 14.57 7.28 -74.06 -0.54 14.03 16 31 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -73.21 274.91 3.20 -70.01 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.58 Total: 13.32 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 3.90 Total: -29.53 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -1.41 Total: -72.65 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -1.59 Total: -27.92 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 1.80 Total: 50.03 kcal Atomic # 17 Polarization: -3.19 SS G_CDS: -0.07 Total: -3.25 kcal Total: -73.21 3.20 -70.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259450625.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.361 kcal (2) G-P(sol) polarization free energy of solvation -73.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds