Wall clock time and date at job start Mon Mar 30 2020 06:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36813 * 125.06927 * 2 1 4 4 C 1.34243 * 109.92846 * 179.97438 * 3 2 1 5 5 C 1.46483 * 106.99892 * 0.02562 * 4 3 2 6 6 C 1.39668 * 134.01570 * 180.02562 * 5 4 3 7 7 C 1.36610 * 119.78584 * 179.97438 * 6 5 4 8 8 C 1.38831 * 120.54123 * 0.02767 * 7 6 5 9 9 C 1.50698 * 119.67854 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47083 * 144.99637 * 9 8 7 11 11 O 1.42908 * 109.46812 * 25.00151 * 9 8 7 12 12 C 1.50697 * 109.46993 * 265.00222 * 9 8 7 13 13 H 1.07991 * 120.00449 * 359.72131 * 12 9 8 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00035 * 179.72339 * 14 12 9 16 16 Si 1.86803 * 119.99853 * 359.72191 * 14 12 9 17 17 H 1.48500 * 109.46986 * 90.00256 * 16 14 12 18 18 H 1.48496 * 109.47029 * 210.00273 * 16 14 12 19 19 H 1.48499 * 109.47352 * 330.00102 * 16 14 12 20 20 C 1.37851 * 120.64514 * 0.24829 * 8 7 6 21 21 Cl 1.73609 * 120.11805 * 179.70457 * 20 8 7 22 22 C 1.37726 * 125.06505 * 179.97438 * 2 1 3 23 23 H 1.08993 * 109.47337 * 90.01649 * 1 2 3 24 24 H 1.08998 * 109.46929 * 210.02345 * 1 2 3 25 25 H 1.08999 * 109.46703 * 330.02269 * 1 2 3 26 26 H 1.08008 * 125.03326 * 359.94708 * 3 2 1 27 27 H 1.08001 * 126.49890 * 179.97438 * 4 3 2 28 28 H 1.08000 * 120.10608 * 0.02562 * 6 5 4 29 29 H 1.08007 * 119.73103 * 179.97438 * 7 6 5 30 30 H 0.96704 * 113.99704 * 299.99976 * 11 9 8 31 31 H 0.97000 * 119.99706 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.1198 0.0000 4 6 3.5470 0.7691 0.0006 5 6 3.5944 -0.6949 0.0003 6 6 4.6298 -1.6323 0.0011 7 6 4.3371 -2.9667 0.0011 8 6 3.0180 -3.3996 -0.0002 9 6 2.7174 -4.8763 -0.0008 10 1 1.8195 -5.0645 0.5878 11 8 3.8183 -5.5868 0.5696 12 6 2.4972 -5.3436 -1.4165 13 1 2.5635 -4.6407 -2.2336 14 6 2.2060 -6.6676 -1.6680 15 7 2.0085 -7.0744 -2.9030 16 14 2.0920 -7.8837 -0.2546 17 1 0.6952 -7.9296 0.2475 18 1 2.4922 -9.2328 -0.7288 19 1 2.9981 -7.4554 0.8413 20 6 1.9806 -2.4919 -0.0067 21 17 0.3362 -3.0484 -0.0161 22 6 2.2563 -1.1273 0.0005 23 1 -0.3633 -0.0003 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5135 26 1 1.8835 2.1354 -0.0008 27 1 4.3938 1.4394 0.0003 28 1 5.6585 -1.3033 0.0026 29 1 5.1385 -3.6909 0.0013 30 1 4.6526 -5.4652 0.0960 31 1 1.8040 -8.0059 -3.0799 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259450628.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:24 Heat of formation + Delta-G solvation = -8.506463 kcal Electronic energy + Delta-G solvation = -17714.799782 eV Core-core repulsion = 14794.081689 eV Total energy + Delta-G solvation = -2920.718093 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.22138 -39.29528 -37.43571 -36.77351 -34.43499 -33.56126 -31.39955 -30.75995 -28.45196 -27.05216 -24.64635 -23.39926 -21.83324 -20.95202 -19.46631 -18.13651 -17.35679 -17.20869 -16.84783 -16.32424 -15.92236 -15.43899 -14.99075 -14.59292 -14.44756 -14.14382 -14.10186 -13.67894 -13.50369 -13.12939 -12.98995 -12.79842 -12.56717 -12.49806 -11.89292 -11.82730 -11.47952 -11.09686 -10.82153 -10.42089 -10.24786 -9.06176 -8.45023 -8.32621 -6.46462 0.10116 0.62582 1.27862 1.39218 1.43941 1.73264 1.80585 1.92789 2.43687 2.87008 3.03420 3.69869 3.86137 4.01279 4.05645 4.08926 4.39250 4.40408 4.45476 4.66379 4.69310 4.82016 4.93028 5.01923 5.13160 5.41516 5.52178 5.69870 5.76773 5.86581 6.10471 6.18748 6.44704 6.63403 7.12616 7.32188 8.81118 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.027928 B = 0.007156 C = 0.006268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.322523 B = 3911.772559 C = 4465.786193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.487 5.487 3 C 0.057 3.943 4 C -0.212 4.212 5 C -0.130 4.130 6 C -0.065 4.065 7 C -0.142 4.142 8 C -0.069 4.069 9 C 0.238 3.762 10 H 0.061 0.939 11 O -0.576 6.576 12 C -0.536 4.536 13 H 0.031 0.969 14 C 0.035 3.965 15 N -0.936 5.936 16 Si 0.926 3.074 17 H -0.287 1.287 18 H -0.292 1.292 19 H -0.203 1.203 20 C -0.063 4.063 21 Cl -0.080 7.080 22 C 0.079 3.921 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.118 0.882 26 H 0.214 0.786 27 H 0.176 0.824 28 H 0.158 0.842 29 H 0.143 0.857 30 H 0.371 0.629 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.990 17.274 8.310 19.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.170 5.170 3 C -0.068 4.068 4 C -0.236 4.236 5 C -0.135 4.135 6 C -0.083 4.083 7 C -0.162 4.162 8 C -0.072 4.072 9 C 0.180 3.820 10 H 0.078 0.922 11 O -0.384 6.384 12 C -0.574 4.574 13 H 0.049 0.951 14 C -0.165 4.165 15 N -0.575 5.575 16 Si 0.750 3.250 17 H -0.214 1.214 18 H -0.219 1.219 19 H -0.124 1.124 20 C -0.092 4.092 21 Cl -0.051 7.051 22 C -0.029 4.029 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.136 0.864 26 H 0.230 0.770 27 H 0.193 0.807 28 H 0.175 0.825 29 H 0.161 0.839 30 H 0.220 0.780 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.017 16.957 8.632 19.028 hybrid contribution -0.352 -0.992 -0.580 1.202 sum -0.370 15.965 8.052 17.884 Atomic orbital electron populations 1.22360 0.75855 1.05665 1.03790 1.44080 1.06944 1.03702 1.62318 1.22538 0.90037 0.91944 1.02270 1.21984 0.97521 0.90999 1.13126 1.19622 0.90855 0.95599 1.07433 1.20609 0.99454 0.91004 0.97233 1.20596 0.94807 0.96759 1.04008 1.20442 0.93136 0.96640 0.96947 1.18516 0.86853 0.84122 0.92504 0.92177 1.86653 1.20782 1.72711 1.58264 1.21354 1.49588 0.94461 0.91949 0.95058 1.25734 0.92607 1.00320 0.97835 1.70065 1.48521 1.17338 1.21625 0.86179 0.79283 0.77101 0.82441 1.21364 1.21892 1.12429 1.19698 0.85448 0.90330 1.13721 1.98289 1.19689 1.89945 1.97212 1.18009 0.92123 0.86651 1.06094 0.91139 0.90852 0.86353 0.76971 0.80656 0.82480 0.83940 0.77978 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.35 10.48 127.77 1.34 2.69 16 2 N -0.49 -13.14 3.18 -539.20 -1.71 -14.86 16 3 C 0.06 1.15 11.29 83.00 0.94 2.08 16 4 C -0.21 -4.88 11.08 23.51 0.26 -4.62 16 5 C -0.13 -4.12 6.37 -20.20 -0.13 -4.25 16 6 C -0.06 -2.00 10.05 22.23 0.22 -1.78 16 7 C -0.14 -5.16 9.23 22.03 0.20 -4.96 16 8 C -0.07 -2.99 5.01 -19.81 -0.10 -3.09 16 9 C 0.24 11.51 2.04 29.10 0.06 11.56 16 10 H 0.06 3.05 6.54 -2.39 -0.02 3.03 16 11 O -0.58 -25.66 9.77 -148.98 -1.46 -27.12 16 12 C -0.54 -30.67 9.33 25.60 0.24 -30.43 16 13 H 0.03 2.02 7.98 -2.92 -0.02 1.99 16 14 C 0.03 2.04 5.47 84.66 0.46 2.51 16 15 N -0.94 -58.75 13.96 21.45 0.30 -58.45 16 16 Si 0.93 45.57 26.99 68.60 1.85 47.43 16 17 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 18 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 19 H -0.20 -9.45 5.29 99.48 0.53 -8.92 16 20 C -0.06 -2.58 6.33 22.41 0.14 -2.44 16 21 Cl -0.08 -3.21 24.47 -2.72 -0.07 -3.27 16 22 C 0.08 2.78 6.78 39.04 0.26 3.04 16 23 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.07 1.80 5.74 -2.39 -0.01 1.79 16 25 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.21 2.11 8.06 -2.91 -0.02 2.09 16 27 H 0.18 2.83 8.06 -2.91 -0.02 2.81 16 28 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 29 H 0.14 4.55 6.36 -2.91 -0.02 4.53 16 30 H 0.37 14.25 7.28 -74.05 -0.54 13.71 16 31 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -73.60 273.99 3.27 -70.33 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.45 Total: 15.62 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 3.90 Total: -29.68 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -1.41 Total: -73.30 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -1.46 Total: -27.12 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.85 Total: 47.43 kcal Atomic # 17 Polarization: -3.21 SS G_CDS: -0.07 Total: -3.27 kcal Total: -73.60 3.27 -70.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259450628.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.824 kcal (2) G-P(sol) polarization free energy of solvation -73.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds