Wall clock time and date at job start Mon Mar 30 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50706 * 109.47079 * 2 1 4 4 C 1.31420 * 121.76034 * 85.35122 * 3 2 1 5 5 S 1.75743 * 109.75657 * 179.97438 * 4 3 2 6 6 C 1.76442 * 90.64413 * 359.82602 * 5 4 3 7 7 C 1.37201 * 140.83619 * 179.42354 * 6 5 4 8 8 C 1.41080 * 107.72988 * 180.48775 * 7 6 5 9 9 C 1.40636 * 126.73219 * 180.21612 * 8 7 6 10 10 H 1.08006 * 119.99695 * 180.02562 * 9 8 7 11 11 C 1.40199 * 120.00385 * 0.02871 * 9 8 7 12 12 N 1.30694 * 120.00009 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00328 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47026 * 59.99427 * 13 11 9 15 15 H 1.48500 * 109.47164 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46733 * 299.99680 * 13 11 9 17 17 C 1.41255 * 106.53031 * 0.23765 * 8 7 6 18 18 C 1.40453 * 126.27666 * 180.02562 * 17 8 7 19 19 O 1.21862 * 120.00318 * 273.65281 * 18 17 8 20 20 O 1.35149 * 119.99811 * 93.64250 * 18 17 8 21 21 N 1.35528 * 109.26680 * 0.30862 * 6 5 4 22 22 H 1.09002 * 109.46774 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47161 * 299.99971 * 1 2 3 24 24 H 1.08993 * 109.47148 * 59.99838 * 1 2 3 25 25 H 1.08998 * 109.46722 * 240.00214 * 2 1 3 26 26 H 1.09000 * 109.47012 * 119.99819 * 2 1 3 27 27 H 1.07997 * 125.11561 * 0.02562 * 4 3 2 28 28 H 1.07998 * 126.12941 * 0.74779 * 7 6 5 29 29 H 0.97002 * 120.00716 * 180.02562 * 12 11 9 30 30 H 0.96705 * 113.99840 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.1776 2.1033 1.1137 5 16 2.7792 3.7138 0.7495 6 6 2.8008 3.3376 -0.9742 7 6 3.1022 3.9098 -2.1842 8 6 2.8495 2.9509 -3.1878 9 6 3.0273 3.1162 -4.5730 10 1 2.7979 2.3045 -5.2475 11 6 3.5024 4.3346 -5.0784 12 7 3.7796 5.3170 -4.2622 13 14 3.7379 4.5545 -6.9184 14 1 2.4382 4.3614 -7.6103 15 1 4.2456 5.9228 -7.1925 16 1 4.7165 3.5541 -7.4151 17 6 2.3824 1.7924 -2.5282 18 6 2.0077 0.5835 -3.1371 19 8 0.8699 0.4350 -3.5476 20 8 2.9090 -0.4150 -3.2681 21 7 2.3620 2.0689 -1.1605 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.9607 1.7301 2.1037 28 1 3.4711 4.9128 -2.3401 29 1 4.1079 6.1602 -4.6117 30 1 2.5591 -1.2067 -3.6994 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259462496.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:34 Heat of formation + Delta-G solvation = -27.867473 kcal Electronic energy + Delta-G solvation = -17911.514235 eV Core-core repulsion = 14992.000291 eV Total energy + Delta-G solvation = -2919.513943 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.82371 -38.89843 -35.96802 -35.13340 -33.73412 -31.54074 -28.85292 -28.65351 -25.77387 -24.04299 -22.65180 -20.79082 -19.97840 -18.50493 -17.41048 -17.09480 -16.61523 -15.39087 -15.18264 -14.62857 -14.52535 -14.04581 -13.74078 -13.35140 -12.99037 -12.79964 -12.21659 -12.07993 -11.56136 -11.41109 -11.39398 -11.22502 -10.95215 -10.72380 -10.50807 -10.34591 -10.22778 -10.06072 -9.75915 -9.44277 -8.79542 -7.57468 -6.85028 -6.22193 -4.52110 1.83403 2.18156 2.57633 2.86022 2.93499 3.01376 3.04896 3.24801 3.79105 3.88990 3.98917 4.45887 5.02021 5.22310 5.25836 5.44410 5.70680 5.90406 5.95717 6.01275 6.17504 6.38430 6.59025 6.78247 6.83951 7.08176 7.10748 7.45243 7.74700 7.84901 8.33893 8.43402 8.68753 8.71232 8.72178 10.04551 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.020996 B = 0.008117 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.293661 B = 3448.593613 C = 4537.763773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.066 4.066 3 C 0.116 3.884 4 C -0.290 4.290 5 S 0.048 5.952 6 C -0.018 4.018 7 C -0.160 4.160 8 C 0.147 3.853 9 C -0.422 4.422 10 H 0.078 0.922 11 C 0.076 3.924 12 N -0.790 5.790 13 Si 0.924 3.076 14 H -0.262 1.262 15 H -0.275 1.275 16 H -0.262 1.262 17 C -0.241 4.241 18 C 0.600 3.400 19 O -0.524 6.524 20 O -0.513 6.513 21 N -0.367 5.367 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.170 0.830 28 H 0.174 0.826 29 H 0.285 0.715 30 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.886 -4.977 5.495 7.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 C 0.002 3.998 4 C -0.429 4.429 5 S 0.305 5.695 6 C -0.237 4.237 7 C -0.197 4.197 8 C 0.139 3.861 9 C -0.452 4.452 10 H 0.096 0.904 11 C -0.144 4.144 12 N -0.415 5.415 13 Si 0.748 3.252 14 H -0.187 1.187 15 H -0.200 1.200 16 H -0.187 1.187 17 C -0.344 4.344 18 C 0.445 3.555 19 O -0.412 6.412 20 O -0.322 6.322 21 N -0.043 5.043 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.187 0.813 28 H 0.191 0.809 29 H 0.096 0.904 30 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -0.711 -3.496 6.522 7.434 hybrid contribution -0.369 -1.577 -1.721 2.363 sum -1.080 -5.074 4.801 7.068 Atomic orbital electron populations 1.21736 0.93912 1.01790 1.02872 1.20369 0.96798 0.90241 1.03254 1.18975 1.00333 0.95879 0.84653 1.23962 1.19789 0.98648 1.00528 1.83933 1.75575 1.13790 0.96174 1.23715 1.12118 0.89827 0.98051 1.21581 1.09899 1.02204 0.86037 1.17068 0.88908 0.87407 0.92750 1.18939 1.36751 0.98591 0.90919 0.90394 1.25995 0.92388 0.94800 1.01172 1.69507 1.31352 1.03738 1.36946 0.86096 0.79913 0.78298 0.80929 1.18678 1.19970 1.18691 1.17333 1.41067 0.96236 0.79746 1.18068 0.81482 0.81504 0.74469 1.90868 1.21357 1.81333 1.47637 1.85436 1.45187 1.26798 1.74766 1.41254 1.49058 1.10638 1.03343 0.92215 0.92252 0.91887 0.91085 0.89687 0.81268 0.80868 0.90361 0.75955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.90 37.16 0.37 -1.79 16 2 C -0.07 -1.07 6.00 -27.88 -0.17 -1.24 16 3 C 0.12 2.29 5.99 -82.13 -0.49 1.80 16 4 C -0.29 -5.11 10.84 28.91 0.31 -4.79 16 5 S 0.05 0.91 23.38 -107.50 -2.51 -1.60 16 6 C -0.02 -0.44 7.72 -16.30 -0.13 -0.57 16 7 C -0.16 -4.18 9.74 -38.88 -0.38 -4.56 16 8 C 0.15 4.00 5.94 -106.77 -0.63 3.36 16 9 C -0.42 -11.21 9.14 -37.94 -0.35 -11.55 16 10 H 0.08 2.04 7.75 -52.48 -0.41 1.63 16 11 C 0.08 1.84 5.50 -17.30 -0.10 1.75 16 12 N -0.79 -19.36 10.32 55.56 0.57 -18.78 16 13 Si 0.92 18.30 29.56 -169.99 -5.03 13.28 16 14 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 15 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 16 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 17 C -0.24 -6.21 6.77 -82.37 -0.56 -6.76 16 18 C 0.60 14.09 5.84 31.57 0.18 14.27 16 19 O -0.52 -12.94 17.83 -19.55 -0.35 -13.29 16 20 O -0.51 -10.03 13.29 -41.74 -0.55 -10.58 16 21 N -0.37 -8.71 3.12 -55.24 -0.17 -8.88 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.07 1.25 6.30 -51.93 -0.33 0.92 16 26 H 0.08 1.10 8.13 -51.93 -0.42 0.68 16 27 H 0.17 2.33 8.06 -52.49 -0.42 1.91 16 28 H 0.17 4.53 5.78 -52.49 -0.30 4.23 16 29 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 30 H 0.39 5.30 8.98 45.56 0.41 5.71 16 LS Contribution 279.92 15.07 4.22 4.22 Total: -1.00 -30.06 279.92 -7.63 -37.69 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -1.87 Total: 8.05 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -1.93 Total: -10.09 kcal Atomic # 7 Polarization: -28.06 SS G_CDS: 0.40 Total: -27.66 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.90 Total: -23.87 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.28 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.51 Total: -1.60 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.06 -7.63 -37.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259462496.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.824 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds