Wall clock time and date at job start Mon Mar 30 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50706 * 109.47079 * 2 1 4 4 C 1.31420 * 121.76034 * 85.35122 * 3 2 1 5 5 S 1.75743 * 109.75657 * 179.97438 * 4 3 2 6 6 C 1.76442 * 90.64413 * 359.82602 * 5 4 3 7 7 C 1.37201 * 140.83619 * 179.42354 * 6 5 4 8 8 C 1.41080 * 107.72988 * 180.48775 * 7 6 5 9 9 C 1.40636 * 126.73219 * 180.21612 * 8 7 6 10 10 H 1.08006 * 119.99695 * 180.02562 * 9 8 7 11 11 C 1.40199 * 120.00385 * 0.02871 * 9 8 7 12 12 N 1.30694 * 120.00009 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00328 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47026 * 59.99427 * 13 11 9 15 15 H 1.48500 * 109.47164 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46733 * 299.99680 * 13 11 9 17 17 C 1.41255 * 106.53031 * 0.23765 * 8 7 6 18 18 C 1.40453 * 126.27666 * 180.02562 * 17 8 7 19 19 O 1.21862 * 120.00318 * 273.65281 * 18 17 8 20 20 O 1.35149 * 119.99811 * 93.64250 * 18 17 8 21 21 N 1.35528 * 109.26680 * 0.30862 * 6 5 4 22 22 H 1.09002 * 109.46774 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47161 * 299.99971 * 1 2 3 24 24 H 1.08993 * 109.47148 * 59.99838 * 1 2 3 25 25 H 1.08998 * 109.46722 * 240.00214 * 2 1 3 26 26 H 1.09000 * 109.47012 * 119.99819 * 2 1 3 27 27 H 1.07997 * 125.11561 * 0.02562 * 4 3 2 28 28 H 1.07998 * 126.12941 * 0.74779 * 7 6 5 29 29 H 0.97002 * 120.00716 * 180.02562 * 12 11 9 30 30 H 0.96705 * 113.99840 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.1776 2.1033 1.1137 5 16 2.7792 3.7138 0.7495 6 6 2.8008 3.3376 -0.9742 7 6 3.1022 3.9098 -2.1842 8 6 2.8495 2.9509 -3.1878 9 6 3.0273 3.1162 -4.5730 10 1 2.7979 2.3045 -5.2475 11 6 3.5024 4.3346 -5.0784 12 7 3.7796 5.3170 -4.2622 13 14 3.7379 4.5545 -6.9184 14 1 2.4382 4.3614 -7.6103 15 1 4.2456 5.9228 -7.1925 16 1 4.7165 3.5541 -7.4151 17 6 2.3824 1.7924 -2.5282 18 6 2.0077 0.5835 -3.1371 19 8 0.8699 0.4350 -3.5476 20 8 2.9090 -0.4150 -3.2681 21 7 2.3620 2.0689 -1.1605 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.9607 1.7301 2.1037 28 1 3.4711 4.9128 -2.3401 29 1 4.1079 6.1602 -4.6117 30 1 2.5591 -1.2067 -3.6994 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259462496.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:34 Heat of formation + Delta-G solvation = -46.407580 kcal Electronic energy + Delta-G solvation = -17912.318194 eV Core-core repulsion = 14992.000291 eV Total energy + Delta-G solvation = -2920.317903 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.56906 -40.67215 -37.58597 -36.88246 -35.44209 -33.05555 -30.58966 -30.40672 -27.58558 -25.42209 -24.40668 -22.41917 -21.77511 -20.22414 -19.05808 -18.87188 -18.44174 -17.07714 -16.86161 -16.29121 -16.22390 -15.42353 -15.24450 -14.99424 -14.55377 -14.35036 -13.87653 -13.53803 -13.28481 -13.05615 -13.02810 -12.71006 -12.51171 -12.23936 -12.13668 -11.90475 -11.88441 -11.75359 -11.61251 -11.14013 -10.50877 -9.40962 -8.63772 -7.91268 -6.44943 0.20265 0.47348 0.96503 1.11645 1.32167 1.38284 1.50922 1.56685 2.10547 2.16760 2.23228 2.82693 3.33283 3.66110 4.00390 4.23198 4.33503 4.54199 4.66371 4.77138 4.84345 4.95839 5.02693 5.11299 5.19125 5.25521 5.45543 5.60521 5.89876 5.95263 6.48781 6.63174 6.80493 6.84474 7.02658 8.28306 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.020996 B = 0.008117 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.293661 B = 3448.593613 C = 4537.763773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C 0.075 3.925 4 C -0.256 4.256 5 S 0.095 5.905 6 C -0.034 4.034 7 C -0.207 4.207 8 C 0.112 3.888 9 C -0.464 4.464 10 H 0.067 0.933 11 C 0.037 3.963 12 N -0.813 5.813 13 Si 0.993 3.007 14 H -0.264 1.264 15 H -0.257 1.257 16 H -0.258 1.258 17 C -0.263 4.263 18 C 0.608 3.392 19 O -0.546 6.546 20 O -0.505 6.505 21 N -0.371 5.371 22 H 0.086 0.914 23 H 0.078 0.922 24 H 0.020 0.980 25 H 0.051 0.949 26 H 0.127 0.873 27 H 0.222 0.778 28 H 0.162 0.838 29 H 0.294 0.706 30 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.984 -6.027 7.478 9.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 C -0.037 4.037 4 C -0.393 4.393 5 S 0.353 5.647 6 C -0.255 4.255 7 C -0.244 4.244 8 C 0.104 3.896 9 C -0.494 4.494 10 H 0.085 0.915 11 C -0.179 4.179 12 N -0.439 5.439 13 Si 0.813 3.187 14 H -0.188 1.188 15 H -0.181 1.181 16 H -0.182 1.182 17 C -0.367 4.367 18 C 0.454 3.546 19 O -0.437 6.437 20 O -0.316 6.316 21 N -0.047 5.047 22 H 0.105 0.895 23 H 0.097 0.903 24 H 0.039 0.961 25 H 0.070 0.930 26 H 0.146 0.854 27 H 0.239 0.761 28 H 0.179 0.821 29 H 0.105 0.895 30 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -0.807 -4.588 8.549 9.736 hybrid contribution -0.367 -1.329 -2.046 2.467 sum -1.174 -5.917 6.503 8.870 Atomic orbital electron populations 1.21710 0.93075 1.03216 1.01670 1.20521 0.97390 0.88091 1.04323 1.19716 1.02164 0.98036 0.83784 1.24738 1.15530 0.97049 1.02005 1.83802 1.74578 1.14575 0.91761 1.24219 1.10732 0.90109 1.00447 1.21390 1.13478 1.02219 0.87268 1.17483 0.89948 0.88583 0.93562 1.19108 1.39528 0.99725 0.91051 0.91499 1.26836 0.91538 0.93842 1.05730 1.69563 1.31366 1.04199 1.38771 0.85087 0.79663 0.79029 0.74953 1.18848 1.18068 1.18230 1.17670 1.40824 0.97040 0.81131 1.17785 0.81326 0.81674 0.73863 1.90843 1.22261 1.81887 1.48669 1.85336 1.44132 1.27395 1.74689 1.41512 1.48618 1.10840 1.03742 0.89543 0.90282 0.96111 0.93041 0.85447 0.76140 0.82065 0.89487 0.72840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.90 71.98 0.71 -3.05 16 2 C -0.06 -1.86 6.00 29.85 0.18 -1.68 16 3 C 0.07 2.77 5.99 41.32 0.25 3.02 16 4 C -0.26 -7.88 10.84 67.37 0.73 -7.15 16 5 S 0.09 3.42 23.38 -56.49 -1.32 2.09 16 6 C -0.03 -1.65 7.72 83.88 0.65 -1.00 16 7 C -0.21 -11.36 9.74 22.72 0.22 -11.14 16 8 C 0.11 6.46 5.94 -21.26 -0.13 6.33 16 9 C -0.46 -26.12 9.14 23.33 0.21 -25.91 16 10 H 0.07 3.72 7.75 -2.91 -0.02 3.70 16 11 C 0.04 1.88 5.50 85.34 0.47 2.35 16 12 N -0.81 -41.64 10.32 21.87 0.23 -41.42 16 13 Si 0.99 38.43 29.56 68.60 2.03 40.46 16 14 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 15 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 16 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 17 C -0.26 -14.00 6.77 39.19 0.27 -13.74 16 18 C 0.61 29.24 5.84 68.36 0.40 29.64 16 19 O -0.55 -27.73 17.83 18.65 0.33 -27.40 16 20 O -0.50 -19.68 13.29 -60.76 -0.81 -20.49 16 21 N -0.37 -17.70 3.12 -328.67 -1.03 -18.72 16 22 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 24 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.05 1.72 6.30 -2.39 -0.02 1.70 16 26 H 0.13 2.63 8.13 -2.39 -0.02 2.61 16 27 H 0.22 4.48 8.06 -2.91 -0.02 4.46 16 28 H 0.16 9.00 5.78 -2.91 -0.02 8.99 16 29 H 0.29 13.37 8.29 -92.71 -0.77 12.60 16 30 H 0.41 10.95 8.98 -74.05 -0.67 10.28 16 Total: -1.00 -69.91 279.92 3.92 -65.98 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.53 Total: 21.81 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 3.96 Total: -22.32 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.80 Total: -60.14 kcal Atomic # 8 Polarization: -47.41 SS G_CDS: -0.47 Total: -47.89 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -1.32 Total: 2.09 kcal Total: -69.91 3.92 -65.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259462496.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.576 kcal (2) G-P(sol) polarization free energy of solvation -69.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds