Wall clock time and date at job start Mon Mar 30 2020 06:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36824 * 125.06434 * 2 1 4 4 C 1.34238 * 109.92817 * 180.15781 * 3 2 1 5 5 C 1.50700 * 126.49820 * 179.88964 * 4 3 2 6 6 H 1.08994 * 109.47551 * 214.68895 * 5 4 3 7 7 O 1.42899 * 109.47136 * 334.69199 * 5 4 3 8 8 C 1.50702 * 109.46869 * 94.68949 * 5 4 3 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 5 4 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 5 4 11 11 N 1.31514 * 119.99985 * 180.27663 * 10 8 5 12 12 Si 1.86800 * 119.99777 * 0.28166 * 10 8 5 13 13 H 1.48498 * 109.47109 * 89.99834 * 12 10 8 14 14 H 1.48507 * 109.46754 * 209.99574 * 12 10 8 15 15 H 1.48498 * 109.47278 * 329.99405 * 12 10 8 16 16 C 1.46490 * 107.00784 * 359.63289 * 4 3 2 17 17 C 1.39638 * 134.02003 * 180.24523 * 16 4 3 18 18 C 1.36721 * 119.75683 * 179.97438 * 17 16 4 19 19 Cl 1.73594 * 119.74840 * 180.02562 * 18 17 16 20 20 C 1.38929 * 120.49845 * 359.97438 * 18 17 16 21 21 C 1.37749 * 120.65391 * 359.97438 * 20 18 17 22 22 C 1.37735 * 125.06496 * 179.74271 * 2 1 3 23 23 H 1.08995 * 109.47145 * 270.25744 * 1 2 3 24 24 H 1.08994 * 109.46816 * 30.25817 * 1 2 3 25 25 H 1.08997 * 109.46771 * 150.25752 * 1 2 3 26 26 H 1.07998 * 125.03941 * 0.05180 * 3 2 1 27 27 H 0.96699 * 113.99712 * 59.99989 * 7 5 4 28 28 H 0.96996 * 119.99730 * 180.02562 * 11 10 8 29 29 H 1.08007 * 120.12214 * 359.95389 * 17 16 4 30 30 H 1.07997 * 119.67183 * 180.02562 * 20 18 17 31 31 H 1.08001 * 120.09738 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2511 1.1199 0.0000 4 6 3.5469 0.7694 -0.0035 5 6 4.7285 1.7048 -0.0070 6 1 5.5362 1.2677 -0.5939 7 8 4.3444 2.9552 -0.5822 8 6 5.1983 1.9258 1.4078 9 1 4.6922 1.4375 2.2274 10 6 6.2783 2.7466 1.6552 11 7 6.6917 2.9352 2.8894 12 14 7.1540 3.5908 0.2375 13 1 6.5246 4.9114 -0.0172 14 1 8.5852 3.7831 0.5840 15 1 7.0486 2.7488 -0.9812 16 6 3.5948 -0.6947 0.0031 17 6 4.6301 -1.6317 0.0076 18 6 4.3367 -2.9671 0.0140 19 17 5.6240 -4.1317 0.0203 20 6 3.0163 -3.3989 0.0165 21 6 1.9804 -2.4908 0.0132 22 6 2.2564 -1.1274 0.0051 23 1 -0.3633 0.0046 1.0276 24 1 -0.3633 0.8876 -0.5178 25 1 -0.3633 -0.8923 -0.5098 26 1 1.8836 2.1354 0.0008 27 1 3.6283 3.4018 -0.1102 28 1 7.4511 3.5129 3.0635 29 1 5.6589 -1.3028 0.0058 30 1 2.7998 -4.4569 0.0220 31 1 0.9572 -2.8365 0.0148 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259499784.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:30 Heat of formation + Delta-G solvation = 5.745157 kcal Electronic energy + Delta-G solvation = -17450.076141 eV Core-core repulsion = 14529.976044 eV Total energy + Delta-G solvation = -2920.100097 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.01763 -37.28762 -36.17192 -35.62963 -32.54446 -32.25626 -29.99249 -28.72942 -27.86088 -25.51171 -22.63257 -22.28756 -21.10655 -19.07000 -17.48165 -16.63889 -16.32447 -15.55612 -15.11170 -14.88504 -14.24013 -14.07149 -13.73248 -13.39870 -13.12431 -12.85057 -12.61130 -12.17748 -12.06918 -11.75662 -11.58586 -11.21451 -10.99443 -10.79015 -10.46790 -10.40428 -9.97279 -9.34433 -9.19673 -8.65501 -8.64363 -7.79781 -7.07859 -6.12060 -4.23665 1.37319 1.71926 2.49478 3.07524 3.16950 3.45167 3.48514 3.61258 4.10439 4.49546 4.80833 4.86616 5.08097 5.16531 5.21134 5.22562 5.40827 5.54742 5.67295 5.79977 5.94622 6.03975 6.20780 6.30585 6.49407 6.65304 6.94220 7.07492 7.31450 7.52181 7.53471 7.66915 8.29683 8.80844 8.98356 9.50060 10.98104 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.007438 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.809631 B = 3763.531264 C = 5025.845974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.490 5.490 3 C 0.031 3.969 4 C -0.131 4.131 5 C 0.253 3.747 6 H 0.070 0.930 7 O -0.582 6.582 8 C -0.549 4.549 9 H 0.075 0.925 10 C 0.082 3.918 11 N -0.890 5.890 12 Si 0.910 3.090 13 H -0.278 1.278 14 H -0.304 1.304 15 H -0.267 1.267 16 C -0.087 4.087 17 C -0.041 4.041 18 C -0.071 4.071 19 Cl -0.087 7.087 20 C -0.096 4.096 21 C -0.125 4.125 22 C 0.098 3.902 23 H 0.065 0.935 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.166 0.834 27 H 0.359 0.641 28 H 0.266 0.734 29 H 0.136 0.864 30 H 0.129 0.871 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.370 -9.147 -6.629 16.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.175 5.175 3 C -0.091 4.091 4 C -0.138 4.138 5 C 0.195 3.805 6 H 0.088 0.912 7 O -0.388 6.388 8 C -0.586 4.586 9 H 0.093 0.907 10 C -0.123 4.123 11 N -0.527 5.527 12 Si 0.739 3.261 13 H -0.204 1.204 14 H -0.232 1.232 15 H -0.191 1.191 16 C -0.092 4.092 17 C -0.060 4.060 18 C -0.098 4.098 19 Cl -0.059 7.059 20 C -0.116 4.116 21 C -0.146 4.146 22 C -0.009 4.009 23 H 0.083 0.917 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.183 0.817 27 H 0.206 0.794 28 H 0.075 0.925 29 H 0.154 0.846 30 H 0.147 0.853 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.028 -9.262 -6.944 15.988 hybrid contribution 0.046 0.468 0.004 0.470 sum -10.982 -8.794 -6.940 15.688 Atomic orbital electron populations 1.21835 0.77776 1.03625 1.02576 1.43666 1.05370 1.04235 1.64197 1.21377 0.89872 0.90585 1.07296 1.21466 0.95359 0.91897 1.05032 1.18399 0.88508 0.79045 0.94521 0.91234 1.86435 1.57347 1.36718 1.58301 1.21433 1.15577 1.30151 0.91475 0.90717 1.25033 0.96015 0.95338 0.95870 1.69951 1.26059 1.37155 1.19578 0.86304 0.76677 0.80609 0.82470 1.20414 1.23228 1.19146 1.18938 0.91207 0.93395 1.05697 1.20233 0.99781 0.89793 0.96171 1.20132 0.88656 0.89736 1.11306 1.98326 1.50793 1.59298 1.97454 1.20498 0.90087 0.99268 1.01772 1.19761 0.98761 0.88960 1.07076 1.18291 0.90394 0.88271 1.03956 0.91683 0.90144 0.90637 0.81705 0.79397 0.92487 0.84641 0.85339 0.86088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 11.03 59.85 0.66 1.48 16 2 N -0.49 -7.43 3.18 -121.80 -0.39 -7.82 16 3 C 0.03 0.53 10.63 -16.73 -0.18 0.35 16 4 C -0.13 -2.71 5.38 -102.71 -0.55 -3.26 16 5 C 0.25 5.97 2.83 -29.03 -0.08 5.89 16 6 H 0.07 1.73 7.19 -51.93 -0.37 1.35 16 7 O -0.58 -12.88 10.84 -35.23 -0.38 -13.26 16 8 C -0.55 -15.16 9.33 -34.44 -0.32 -15.48 16 9 H 0.07 2.28 7.98 -52.49 -0.42 1.86 16 10 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 11 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 12 Si 0.91 22.91 26.18 -169.99 -4.45 18.45 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 15 H -0.27 -6.65 6.54 56.52 0.37 -6.28 16 16 C -0.09 -1.70 6.35 -105.14 -0.67 -2.37 16 17 C -0.04 -0.76 9.81 -39.61 -0.39 -1.15 16 18 C -0.07 -1.14 6.28 -39.87 -0.25 -1.39 16 19 Cl -0.09 -1.29 28.93 -51.86 -1.50 -2.79 16 20 C -0.10 -1.36 9.79 -39.50 -0.39 -1.75 16 21 C -0.12 -1.75 9.96 -39.43 -0.39 -2.14 16 22 C 0.10 1.65 6.81 -83.97 -0.57 1.08 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 26 H 0.17 2.36 7.40 -52.49 -0.39 1.97 16 27 H 0.36 6.75 8.09 45.56 0.37 7.12 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.14 2.59 8.06 -52.48 -0.42 2.17 16 30 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 31 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 285.03 15.07 4.30 4.30 Total: -1.00 -32.27 285.03 -7.39 -39.66 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -2.51 Total: 4.12 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -3.23 Total: -16.51 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.39 Total: -33.97 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.38 Total: -13.26 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.45 Total: 18.45 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -1.50 Total: -2.79 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.27 -7.39 -39.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259499784.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.405 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds