Wall clock time and date at job start Mon Mar 30 2020 06:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36824 * 125.06434 * 2 1 4 4 C 1.34238 * 109.92817 * 180.15781 * 3 2 1 5 5 C 1.50700 * 126.49820 * 179.88964 * 4 3 2 6 6 H 1.08994 * 109.47551 * 214.68895 * 5 4 3 7 7 O 1.42899 * 109.47136 * 334.69199 * 5 4 3 8 8 C 1.50702 * 109.46869 * 94.68949 * 5 4 3 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 5 4 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 5 4 11 11 N 1.31514 * 119.99985 * 180.27663 * 10 8 5 12 12 Si 1.86800 * 119.99777 * 0.28166 * 10 8 5 13 13 H 1.48498 * 109.47109 * 89.99834 * 12 10 8 14 14 H 1.48507 * 109.46754 * 209.99574 * 12 10 8 15 15 H 1.48498 * 109.47278 * 329.99405 * 12 10 8 16 16 C 1.46490 * 107.00784 * 359.63289 * 4 3 2 17 17 C 1.39638 * 134.02003 * 180.24523 * 16 4 3 18 18 C 1.36721 * 119.75683 * 179.97438 * 17 16 4 19 19 Cl 1.73594 * 119.74840 * 180.02562 * 18 17 16 20 20 C 1.38929 * 120.49845 * 359.97438 * 18 17 16 21 21 C 1.37749 * 120.65391 * 359.97438 * 20 18 17 22 22 C 1.37735 * 125.06496 * 179.74271 * 2 1 3 23 23 H 1.08995 * 109.47145 * 270.25744 * 1 2 3 24 24 H 1.08994 * 109.46816 * 30.25817 * 1 2 3 25 25 H 1.08997 * 109.46771 * 150.25752 * 1 2 3 26 26 H 1.07998 * 125.03941 * 0.05180 * 3 2 1 27 27 H 0.96699 * 113.99712 * 59.99989 * 7 5 4 28 28 H 0.96996 * 119.99730 * 180.02562 * 11 10 8 29 29 H 1.08007 * 120.12214 * 359.95389 * 17 16 4 30 30 H 1.07997 * 119.67183 * 180.02562 * 20 18 17 31 31 H 1.08001 * 120.09738 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2511 1.1199 0.0000 4 6 3.5469 0.7694 -0.0035 5 6 4.7285 1.7048 -0.0070 6 1 5.5362 1.2677 -0.5939 7 8 4.3444 2.9552 -0.5822 8 6 5.1983 1.9258 1.4078 9 1 4.6922 1.4375 2.2274 10 6 6.2783 2.7466 1.6552 11 7 6.6917 2.9352 2.8894 12 14 7.1540 3.5908 0.2375 13 1 6.5246 4.9114 -0.0172 14 1 8.5852 3.7831 0.5840 15 1 7.0486 2.7488 -0.9812 16 6 3.5948 -0.6947 0.0031 17 6 4.6301 -1.6317 0.0076 18 6 4.3367 -2.9671 0.0140 19 17 5.6240 -4.1317 0.0203 20 6 3.0163 -3.3989 0.0165 21 6 1.9804 -2.4908 0.0132 22 6 2.2564 -1.1274 0.0051 23 1 -0.3633 0.0046 1.0276 24 1 -0.3633 0.8876 -0.5178 25 1 -0.3633 -0.8923 -0.5098 26 1 1.8836 2.1354 0.0008 27 1 3.6283 3.4018 -0.1102 28 1 7.4511 3.5129 3.0635 29 1 5.6589 -1.3028 0.0058 30 1 2.7998 -4.4569 0.0220 31 1 0.9572 -2.8365 0.0148 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259499784.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:30 Heat of formation + Delta-G solvation = -15.827039 kcal Electronic energy + Delta-G solvation = -17451.011582 eV Core-core repulsion = 14529.976044 eV Total energy + Delta-G solvation = -2921.035537 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.27350 -38.56195 -37.87896 -36.84981 -34.45159 -33.79789 -31.15413 -30.20322 -29.41852 -26.87580 -24.25030 -23.67037 -22.36411 -20.49516 -19.45012 -18.08132 -17.55710 -16.91174 -16.74909 -16.18496 -15.91663 -15.46835 -15.07784 -14.88386 -14.79634 -14.23403 -13.76303 -13.54027 -13.31108 -13.22127 -12.95359 -12.92144 -12.74475 -12.32193 -11.91335 -11.71787 -11.60773 -11.31732 -10.86324 -10.70639 -10.34306 -9.05326 -8.42098 -8.33021 -6.48707 0.11398 0.47449 1.25681 1.41136 1.43120 1.58434 1.79764 1.97840 2.38083 2.80983 2.97885 3.70447 3.88028 3.94371 4.05272 4.13537 4.36548 4.48182 4.54788 4.67943 4.73035 4.76469 4.82972 4.96440 5.16364 5.36137 5.45415 5.55580 5.69357 5.82768 6.10741 6.22309 6.47528 6.64177 7.14131 7.31919 8.79674 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.007438 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.809631 B = 3763.531264 C = 5025.845974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.484 5.484 3 C 0.055 3.945 4 C -0.191 4.191 5 C 0.268 3.732 6 H 0.048 0.952 7 O -0.582 6.582 8 C -0.543 4.543 9 H 0.032 0.968 10 C 0.030 3.970 11 N -0.937 5.937 12 Si 0.972 3.028 13 H -0.267 1.267 14 H -0.302 1.302 15 H -0.266 1.266 16 C -0.122 4.122 17 C -0.078 4.078 18 C -0.069 4.069 19 Cl -0.079 7.079 20 C -0.095 4.095 21 C -0.107 4.107 22 C 0.087 3.913 23 H 0.077 0.923 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.193 0.807 27 H 0.376 0.624 28 H 0.268 0.732 29 H 0.110 0.890 30 H 0.164 0.836 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.225 -10.030 -7.982 19.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.166 5.166 3 C -0.070 4.070 4 C -0.198 4.198 5 C 0.210 3.790 6 H 0.065 0.935 7 O -0.390 6.390 8 C -0.581 4.581 9 H 0.050 0.950 10 C -0.169 4.169 11 N -0.576 5.576 12 Si 0.799 3.201 13 H -0.193 1.193 14 H -0.230 1.230 15 H -0.191 1.191 16 C -0.127 4.127 17 C -0.097 4.097 18 C -0.096 4.096 19 Cl -0.050 7.050 20 C -0.115 4.115 21 C -0.127 4.127 22 C -0.021 4.021 23 H 0.095 0.905 24 H 0.121 0.879 25 H 0.118 0.882 26 H 0.210 0.790 27 H 0.224 0.776 28 H 0.077 0.923 29 H 0.128 0.872 30 H 0.182 0.818 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -13.928 -10.160 -8.302 19.134 hybrid contribution 0.812 0.651 0.460 1.137 sum -13.116 -9.509 -7.842 17.998 Atomic orbital electron populations 1.22268 0.74122 1.06075 1.04131 1.43974 1.07333 1.02950 1.62377 1.21720 0.89120 0.92342 1.03813 1.21195 0.95836 0.92395 1.10330 1.17865 0.89781 0.80143 0.91225 0.93463 1.86341 1.58203 1.36330 1.58079 1.21639 1.14913 1.28794 0.92749 0.94986 1.25820 0.96900 0.96260 0.97961 1.70070 1.27174 1.38784 1.21583 0.85330 0.75643 0.79766 0.79384 1.19255 1.22976 1.19075 1.19185 0.93195 0.93211 1.07130 1.20179 0.98774 0.91325 0.99456 1.20322 0.90099 0.88965 1.10257 1.98323 1.50812 1.58543 1.97355 1.20922 0.88827 1.01177 1.00559 1.20250 1.00845 0.87425 1.04198 1.18586 0.89395 0.89840 1.04263 0.90468 0.87927 0.88169 0.78968 0.77593 0.92278 0.87231 0.81840 0.81632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 11.03 127.77 1.41 2.51 16 2 N -0.48 -13.25 3.18 -539.26 -1.71 -14.97 16 3 C 0.05 1.80 10.63 83.00 0.88 2.68 16 4 C -0.19 -8.04 5.38 -18.63 -0.10 -8.14 16 5 C 0.27 13.05 2.83 29.10 0.08 13.13 16 6 H 0.05 2.48 7.19 -2.39 -0.02 2.46 16 7 O -0.58 -25.52 10.84 -148.98 -1.61 -27.14 16 8 C -0.54 -31.39 9.33 25.60 0.24 -31.15 16 9 H 0.03 2.07 7.98 -2.91 -0.02 2.05 16 10 C 0.03 1.79 5.47 84.66 0.46 2.26 16 11 N -0.94 -58.75 13.96 21.45 0.30 -58.45 16 12 Si 0.97 48.30 26.18 68.60 1.80 50.10 16 13 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 14 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 15 H -0.27 -13.09 6.54 99.48 0.65 -12.44 16 16 C -0.12 -4.88 6.35 -20.20 -0.13 -5.01 16 17 C -0.08 -3.06 9.81 22.25 0.22 -2.84 16 18 C -0.07 -2.20 6.28 22.08 0.14 -2.07 16 19 Cl -0.08 -2.30 28.93 -2.72 -0.08 -2.38 16 20 C -0.10 -2.41 9.79 22.32 0.22 -2.19 16 21 C -0.11 -2.60 9.96 22.36 0.22 -2.37 16 22 C 0.09 2.74 6.81 39.02 0.27 3.01 16 23 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.10 1.05 8.10 -2.39 -0.02 1.03 16 26 H 0.19 5.00 7.40 -2.91 -0.02 4.97 16 27 H 0.38 13.70 8.09 -74.06 -0.60 13.10 16 28 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 29 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 30 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 31 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -73.85 285.03 3.10 -70.75 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.50 Total: 12.26 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 3.91 Total: -30.18 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -1.42 Total: -73.42 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -1.61 Total: -27.14 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 1.80 Total: 50.10 kcal Atomic # 17 Polarization: -2.30 SS G_CDS: -0.08 Total: -2.38 kcal Total: -73.85 3.10 -70.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259499784.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.925 kcal (2) G-P(sol) polarization free energy of solvation -73.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds