Wall clock time and date at job start Mon Mar 30 2020 06:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37737 * 125.06739 * 2 1 4 4 C 1.39126 * 133.49199 * 359.92131 * 3 2 1 5 5 C 1.37746 * 119.79631 * 180.37141 * 4 3 2 6 6 C 1.38922 * 120.65302 * 359.97438 * 5 4 3 7 7 Cl 1.73600 * 119.74733 * 180.02562 * 6 5 4 8 8 C 1.36721 * 120.50450 * 0.02562 * 6 5 4 9 9 C 1.39643 * 119.75095 * 359.97438 * 8 6 5 10 10 C 1.46490 * 134.01482 * 179.97438 * 9 8 6 11 11 C 1.34239 * 107.00330 * 180.02562 * 10 9 8 12 12 C 1.50700 * 125.03227 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.46848 * 155.23078 * 12 11 10 14 14 O 1.42905 * 109.46992 * 35.24026 * 12 11 10 15 15 C 1.50693 * 109.47331 * 275.23611 * 12 11 10 16 16 H 1.08001 * 120.00341 * 359.97438 * 15 12 11 17 17 C 1.37886 * 119.99902 * 180.02562 * 15 12 11 18 18 N 1.31512 * 119.99740 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99995 * 180.02562 * 17 15 12 20 20 H 1.48492 * 109.46998 * 179.97438 * 19 17 15 21 21 H 1.48504 * 109.46797 * 299.99887 * 19 17 15 22 22 H 1.48502 * 109.47271 * 59.99687 * 19 17 15 23 23 H 1.08999 * 109.46738 * 265.03214 * 1 2 3 24 24 H 1.09000 * 109.46796 * 25.03127 * 1 2 3 25 25 H 1.09001 * 109.46648 * 145.03080 * 1 2 3 26 26 H 1.07999 * 120.09713 * 0.38602 * 4 3 2 27 27 H 1.08001 * 119.67167 * 180.02562 * 5 4 3 28 28 H 1.07997 * 120.12752 * 179.97438 * 8 6 5 29 29 H 1.08008 * 126.49770 * 0.02562 * 10 9 8 30 30 H 0.96706 * 113.99615 * 294.94184 * 14 12 11 31 31 H 0.96999 * 120.00557 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2564 1.1273 0.0000 4 6 1.9804 2.4910 -0.0014 5 6 3.0163 3.3989 -0.0087 6 6 4.3367 2.9671 -0.0142 7 17 5.6238 4.1319 -0.0226 8 6 4.6301 1.6317 -0.0129 9 6 3.5948 0.6947 -0.0055 10 6 3.5470 -0.7694 -0.0027 11 6 2.2512 -1.1198 0.0045 12 6 1.7382 -2.5369 0.0090 13 1 0.7395 -2.5603 0.4448 14 8 2.6149 -3.3582 0.7830 15 6 1.6818 -3.0552 -1.4048 16 1 1.9865 -2.4218 -2.2248 17 6 1.2402 -4.3379 -1.6517 18 7 0.8688 -5.1090 -0.6532 19 14 1.1710 -4.9808 -3.4042 20 1 0.6654 -6.3770 -3.3996 21 1 0.2608 -4.1269 -4.2090 22 1 2.5321 -4.9496 -3.9971 23 1 -0.3633 -0.0890 1.0238 24 1 -0.3633 0.9312 -0.4348 25 1 -0.3633 -0.8422 -0.5890 26 1 0.9572 2.8365 0.0035 27 1 2.7997 4.4570 -0.0093 28 1 5.6588 1.3028 -0.0176 29 1 4.3938 -1.4398 -0.0058 30 1 3.5027 -3.4466 0.4098 31 1 0.9051 -4.7754 0.2569 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259499828.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:14 Heat of formation + Delta-G solvation = -26.021204 kcal Electronic energy + Delta-G solvation = -17360.756844 eV Core-core repulsion = 14439.279254 eV Total energy + Delta-G solvation = -2921.477590 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.40093 -38.88728 -37.78794 -36.79798 -34.43187 -33.78485 -31.29244 -30.76365 -28.15865 -27.06157 -25.21182 -22.90932 -22.64035 -20.82342 -19.51704 -18.37154 -17.72463 -17.24315 -16.33861 -16.10398 -15.64349 -15.57891 -15.16996 -14.90167 -14.39358 -14.30073 -14.11874 -13.89158 -13.42210 -13.09974 -13.06610 -12.65680 -12.39585 -12.27481 -11.95983 -11.81758 -11.67934 -11.44278 -10.73407 -10.65876 -10.43695 -9.05375 -8.71644 -8.55540 -6.56215 0.05736 0.43503 1.21168 1.53176 1.58767 1.71820 1.80270 1.85871 2.52862 2.76186 3.09346 3.62725 3.74860 3.88751 3.89862 4.05247 4.30355 4.32889 4.41221 4.52621 4.57915 4.66749 4.88491 4.96289 4.99183 5.28216 5.32486 5.63837 5.69615 5.83194 6.03631 6.16816 6.32582 6.49170 6.98052 7.36219 8.68735 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.031081 B = 0.004782 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.645535 B = 5853.276423 C = 6026.922129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.482 5.482 3 C 0.077 3.923 4 C -0.110 4.110 5 C -0.095 4.095 6 C -0.065 4.065 7 Cl -0.071 7.071 8 C -0.072 4.072 9 C -0.117 4.117 10 C -0.229 4.229 11 C 0.086 3.914 12 C 0.273 3.727 13 H 0.040 0.960 14 O -0.580 6.580 15 C -0.645 4.645 16 H 0.045 0.955 17 C -0.005 4.005 18 N -0.912 5.912 19 Si 1.114 2.886 20 H -0.282 1.282 21 H -0.271 1.271 22 H -0.272 1.272 23 H 0.078 0.922 24 H 0.111 0.889 25 H 0.071 0.929 26 H 0.156 0.844 27 H 0.163 0.837 28 H 0.137 0.863 29 H 0.145 0.855 30 H 0.371 0.629 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.553 16.309 0.226 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.165 5.165 3 C -0.029 4.029 4 C -0.131 4.131 5 C -0.115 4.115 6 C -0.092 4.092 7 Cl -0.042 7.042 8 C -0.091 4.091 9 C -0.123 4.123 10 C -0.252 4.252 11 C -0.023 4.023 12 C 0.214 3.786 13 H 0.057 0.943 14 O -0.385 6.385 15 C -0.682 4.682 16 H 0.063 0.937 17 C -0.208 4.208 18 N -0.547 5.547 19 Si 0.935 3.065 20 H -0.207 1.207 21 H -0.196 1.196 22 H -0.197 1.197 23 H 0.096 0.904 24 H 0.130 0.870 25 H 0.090 0.910 26 H 0.173 0.827 27 H 0.181 0.819 28 H 0.155 0.845 29 H 0.162 0.838 30 H 0.218 0.782 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.376 15.009 -0.264 15.075 hybrid contribution 0.978 1.046 0.764 1.623 sum 2.355 16.055 0.500 16.235 Atomic orbital electron populations 1.22127 0.75807 1.05233 1.03653 1.43944 1.06967 1.03398 1.62207 1.18749 0.90123 0.89291 1.04769 1.20241 1.00994 0.87422 1.04413 1.20901 0.89210 1.00873 1.00496 1.20293 0.89817 0.89474 1.09649 1.98335 1.50102 1.58473 1.97304 1.20164 0.98873 0.90415 0.99680 1.19230 0.92818 0.93250 1.06978 1.21382 0.95529 0.92926 1.15412 1.21644 0.91289 0.89988 0.99343 1.17929 0.88691 0.80669 0.91278 0.94258 1.86446 1.26634 1.71500 1.53956 1.22487 1.51310 1.02185 0.92268 0.93714 1.27207 0.91331 0.93725 1.08585 1.70794 1.43290 1.39167 1.01422 0.82975 0.77741 0.75892 0.69875 1.20744 1.19645 1.19716 0.90394 0.87034 0.90971 0.82665 0.81937 0.84501 0.83764 0.78174 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.13 10.48 127.77 1.34 3.47 16 2 N -0.48 -17.88 3.18 -524.65 -1.67 -19.54 16 3 C 0.08 2.62 6.81 39.02 0.27 2.89 16 4 C -0.11 -2.81 9.89 22.37 0.22 -2.59 16 5 C -0.10 -2.20 9.79 22.32 0.22 -1.98 16 6 C -0.06 -1.69 6.28 22.08 0.14 -1.55 16 7 Cl -0.07 -1.59 28.93 -2.72 -0.08 -1.66 16 8 C -0.07 -2.19 9.81 22.25 0.22 -1.97 16 9 C -0.12 -4.25 6.37 -20.20 -0.13 -4.38 16 10 C -0.23 -9.31 10.41 23.51 0.24 -9.07 16 11 C 0.09 3.73 5.85 40.87 0.24 3.97 16 12 C 0.27 13.49 2.47 29.10 0.07 13.57 16 13 H 0.04 2.08 7.32 -2.39 -0.02 2.06 16 14 O -0.58 -28.86 11.84 -148.98 -1.76 -30.62 16 15 C -0.64 -34.47 8.70 25.60 0.22 -34.25 16 16 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 17 C -0.01 -0.27 5.40 84.66 0.46 0.18 16 18 N -0.91 -53.38 13.53 21.45 0.29 -53.09 16 19 Si 1.11 47.77 29.90 68.60 2.05 49.82 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 21 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 23 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.11 2.40 7.85 -2.39 -0.02 2.39 16 25 H 0.07 2.41 7.66 -2.39 -0.02 2.39 16 26 H 0.16 2.90 7.91 -2.91 -0.02 2.88 16 27 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 28 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.14 5.54 7.61 -2.91 -0.02 5.51 16 30 H 0.37 16.62 8.27 -74.05 -0.61 16.00 16 31 H 0.27 16.24 6.47 -92.71 -0.60 15.64 16 Total: -1.00 -64.03 286.05 3.06 -60.97 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.72 Total: 25.84 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 3.51 Total: -31.72 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -1.38 Total: -72.63 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -1.76 Total: -30.62 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.05 Total: 49.82 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.66 kcal Total: -64.03 3.06 -60.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259499828.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.947 kcal (2) G-P(sol) polarization free energy of solvation -64.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds