Wall clock time and date at job start Mon Mar 30 2020 06:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37733 * 125.06240 * 2 1 4 4 C 1.39125 * 133.49406 * 0.04525 * 3 2 1 5 5 C 1.37742 * 119.79779 * 179.97438 * 4 3 2 6 6 C 1.38936 * 120.65065 * 359.97438 * 5 4 3 7 7 Cl 1.73607 * 119.74508 * 180.02562 * 6 5 4 8 8 C 1.36711 * 120.50434 * 0.02562 * 6 5 4 9 9 C 1.39647 * 119.75230 * 359.97438 * 8 6 5 10 10 C 1.46486 * 134.01437 * 180.33784 * 9 8 6 11 11 C 1.34234 * 107.00439 * 180.09172 * 10 9 8 12 12 C 1.50697 * 125.03715 * 179.86413 * 11 10 9 13 13 H 1.08997 * 109.47395 * 204.70180 * 12 11 10 14 14 O 1.42903 * 109.47214 * 324.69725 * 12 11 10 15 15 C 1.50700 * 109.47266 * 84.69595 * 12 11 10 16 16 H 1.07999 * 119.99988 * 0.02562 * 15 12 11 17 17 C 1.37885 * 120.00047 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 12 19 19 Si 1.86805 * 119.99854 * 359.72512 * 17 15 12 20 20 H 1.48498 * 109.46909 * 90.00086 * 19 17 15 21 21 H 1.48497 * 109.46701 * 209.99996 * 19 17 15 22 22 H 1.48500 * 109.46867 * 330.00101 * 19 17 15 23 23 H 1.09002 * 109.47322 * 269.97193 * 1 2 3 24 24 H 1.09000 * 109.47716 * 29.97570 * 1 2 3 25 25 H 1.09001 * 109.47317 * 149.97623 * 1 2 3 26 26 H 1.07994 * 120.09979 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.67666 * 180.02562 * 5 4 3 28 28 H 1.08002 * 120.12398 * 179.97438 * 8 6 5 29 29 H 1.08002 * 126.50054 * 359.95616 * 10 9 8 30 30 H 0.96705 * 114.00076 * 59.99301 * 14 12 11 31 31 H 0.97001 * 119.99646 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2562 1.1274 0.0000 4 6 1.9802 2.4910 0.0008 5 6 3.0159 3.3990 0.0011 6 6 4.3365 2.9672 0.0011 7 17 5.6236 4.1321 0.0021 8 6 4.6299 1.6320 0.0003 9 6 3.5946 0.6948 0.0000 10 6 3.5469 -0.7692 0.0055 11 6 2.2511 -1.1198 -0.0001 12 6 1.7382 -2.5368 -0.0002 13 1 0.7388 -2.5614 -0.4344 14 8 2.6137 -3.3602 -0.7734 15 6 1.6841 -3.0516 1.4151 16 1 1.9900 -2.4161 2.2329 17 6 1.2439 -4.3340 1.6658 18 7 1.1962 -4.7831 2.9010 19 14 0.7074 -5.4306 0.2519 20 1 1.8760 -6.1963 -0.2516 21 1 -0.3360 -6.3748 0.7262 22 1 0.1559 -4.5924 -0.8428 23 1 -0.3634 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5142 26 1 0.9570 2.8364 0.0012 27 1 2.7994 4.4571 0.0021 28 1 5.6587 1.3031 -0.0001 29 1 4.3937 -1.4396 0.0106 30 1 3.5226 -3.3857 -0.4441 31 1 0.8868 -5.6854 3.0774 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259499831.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:16 Heat of formation + Delta-G solvation = 2.030286 kcal Electronic energy + Delta-G solvation = -17361.192925 eV Core-core repulsion = 14440.931739 eV Total energy + Delta-G solvation = -2920.261186 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.07298 -37.57174 -36.27654 -35.50437 -32.58127 -32.41457 -30.09078 -29.42805 -27.11892 -25.82684 -23.38009 -21.41059 -21.37281 -19.23409 -17.71070 -16.83649 -16.34735 -15.66492 -15.08488 -14.92058 -14.25298 -14.10004 -13.86432 -13.20379 -13.14446 -12.81668 -12.68788 -12.25676 -12.06277 -11.88887 -11.76229 -11.29265 -11.13692 -10.96361 -10.60448 -10.36405 -10.10243 -9.53216 -9.39425 -8.96685 -8.83605 -7.70909 -7.25556 -6.30619 -4.45884 1.29659 1.65554 2.34113 3.13682 3.19005 3.30557 3.36135 3.45627 4.00811 4.31801 4.80753 4.97556 5.00936 5.10047 5.23300 5.40408 5.49742 5.60071 5.66991 5.78834 5.84955 5.94331 6.14612 6.28697 6.41793 6.56378 6.63095 6.93191 7.23896 7.25107 7.58280 7.65307 8.09766 8.58633 8.77618 9.28399 10.78833 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.037302 B = 0.004831 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.451715 B = 5794.080011 C = 6055.823814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.475 5.475 3 C 0.091 3.909 4 C -0.112 4.112 5 C -0.107 4.107 6 C -0.064 4.064 7 Cl -0.090 7.090 8 C -0.064 4.064 9 C -0.089 4.089 10 C -0.218 4.218 11 C 0.117 3.883 12 C 0.247 3.753 13 H 0.071 0.929 14 O -0.574 6.574 15 C -0.559 4.559 16 H 0.078 0.922 17 C 0.087 3.913 18 N -0.882 5.882 19 Si 0.911 3.089 20 H -0.274 1.274 21 H -0.301 1.301 22 H -0.269 1.269 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.123 0.877 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.146 0.854 30 H 0.369 0.631 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.742 12.957 -6.545 14.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.158 5.158 3 C -0.016 4.016 4 C -0.133 4.133 5 C -0.127 4.127 6 C -0.091 4.091 7 Cl -0.061 7.061 8 C -0.083 4.083 9 C -0.094 4.094 10 C -0.242 4.242 11 C 0.009 3.991 12 C 0.189 3.811 13 H 0.088 0.912 14 O -0.380 6.380 15 C -0.596 4.596 16 H 0.097 0.903 17 C -0.119 4.119 18 N -0.518 5.518 19 Si 0.740 3.260 20 H -0.200 1.200 21 H -0.229 1.229 22 H -0.194 1.194 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.104 0.896 26 H 0.141 0.859 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.163 0.837 30 H 0.217 0.783 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.907 12.765 -6.774 14.480 hybrid contribution 0.251 -0.349 -0.101 0.442 sum 1.158 12.416 -6.876 14.240 Atomic orbital electron populations 1.21927 0.77324 1.03553 1.03494 1.43802 1.05964 1.03821 1.62237 1.18314 0.90499 0.88293 1.04451 1.19847 0.98981 0.88997 1.05446 1.20467 0.90038 0.99309 1.02911 1.20120 0.88625 0.89590 1.10786 1.98325 1.50839 1.59524 1.97454 1.20029 0.98877 0.89945 0.99468 1.19072 0.91395 0.93865 1.05106 1.21198 0.95764 0.91515 1.15684 1.21811 0.90330 0.90057 0.96885 1.18629 0.89907 0.79709 0.92885 0.91177 1.86434 1.23992 1.69596 1.57970 1.21304 1.47475 1.00124 0.90694 0.90344 1.24997 0.93233 0.97710 0.95943 1.69932 1.44714 1.17722 1.19435 0.86298 0.78213 0.79875 0.81643 1.19976 1.22930 1.19395 0.90771 0.90759 0.89585 0.85880 0.85330 0.85364 0.83673 0.78322 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.80 59.85 0.65 1.77 16 2 N -0.47 -8.53 3.18 -117.19 -0.37 -8.90 16 3 C 0.09 1.57 6.81 -83.97 -0.57 1.00 16 4 C -0.11 -1.58 9.96 -39.43 -0.39 -1.97 16 5 C -0.11 -1.43 9.79 -39.50 -0.39 -1.82 16 6 C -0.06 -0.91 6.28 -39.88 -0.25 -1.16 16 7 Cl -0.09 -1.13 28.93 -51.86 -1.50 -2.63 16 8 C -0.06 -1.00 9.81 -39.61 -0.39 -1.38 16 9 C -0.09 -1.58 6.37 -105.14 -0.67 -2.25 16 10 C -0.22 -4.16 10.37 -37.67 -0.39 -4.55 16 11 C 0.12 2.36 5.85 -81.78 -0.48 1.88 16 12 C 0.25 5.50 2.52 -29.04 -0.07 5.43 16 13 H 0.07 1.57 5.82 -51.93 -0.30 1.27 16 14 O -0.57 -12.37 10.91 -35.23 -0.38 -12.75 16 15 C -0.56 -14.67 9.33 -34.44 -0.32 -14.99 16 16 H 0.08 2.30 7.98 -52.49 -0.42 1.88 16 17 C 0.09 2.37 5.47 -17.82 -0.10 2.27 16 18 N -0.88 -25.52 13.96 55.43 0.77 -24.75 16 19 Si 0.91 21.64 26.18 -169.99 -4.45 17.19 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 23 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.07 0.82 8.10 -51.93 -0.42 0.39 16 25 H 0.09 1.21 6.81 -51.93 -0.35 0.86 16 26 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 27 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 28 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.15 2.51 7.49 -52.49 -0.39 2.12 16 30 H 0.37 6.93 8.09 45.56 0.37 7.30 16 31 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 282.20 15.07 4.25 4.25 Total: -1.00 -29.97 282.20 -7.44 -37.41 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -2.38 Total: 5.95 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -3.37 Total: -15.77 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.40 Total: -33.64 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.38 Total: -12.75 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.45 Total: 17.19 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.50 Total: -2.63 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.97 -7.44 -37.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259499831.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.436 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds