Wall clock time and date at job start Mon Mar 30 2020 06:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37733 * 125.06240 * 2 1 4 4 C 1.39125 * 133.49406 * 0.04525 * 3 2 1 5 5 C 1.37742 * 119.79779 * 179.97438 * 4 3 2 6 6 C 1.38936 * 120.65065 * 359.97438 * 5 4 3 7 7 Cl 1.73607 * 119.74508 * 180.02562 * 6 5 4 8 8 C 1.36711 * 120.50434 * 0.02562 * 6 5 4 9 9 C 1.39647 * 119.75230 * 359.97438 * 8 6 5 10 10 C 1.46486 * 134.01437 * 180.33784 * 9 8 6 11 11 C 1.34234 * 107.00439 * 180.09172 * 10 9 8 12 12 C 1.50697 * 125.03715 * 179.86413 * 11 10 9 13 13 H 1.08997 * 109.47395 * 204.70180 * 12 11 10 14 14 O 1.42903 * 109.47214 * 324.69725 * 12 11 10 15 15 C 1.50700 * 109.47266 * 84.69595 * 12 11 10 16 16 H 1.07999 * 119.99988 * 0.02562 * 15 12 11 17 17 C 1.37885 * 120.00047 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 12 19 19 Si 1.86805 * 119.99854 * 359.72512 * 17 15 12 20 20 H 1.48498 * 109.46909 * 90.00086 * 19 17 15 21 21 H 1.48497 * 109.46701 * 209.99996 * 19 17 15 22 22 H 1.48500 * 109.46867 * 330.00101 * 19 17 15 23 23 H 1.09002 * 109.47322 * 269.97193 * 1 2 3 24 24 H 1.09000 * 109.47716 * 29.97570 * 1 2 3 25 25 H 1.09001 * 109.47317 * 149.97623 * 1 2 3 26 26 H 1.07994 * 120.09979 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.67666 * 180.02562 * 5 4 3 28 28 H 1.08002 * 120.12398 * 179.97438 * 8 6 5 29 29 H 1.08002 * 126.50054 * 359.95616 * 10 9 8 30 30 H 0.96705 * 114.00076 * 59.99301 * 14 12 11 31 31 H 0.97001 * 119.99646 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2562 1.1274 0.0000 4 6 1.9802 2.4910 0.0008 5 6 3.0159 3.3990 0.0011 6 6 4.3365 2.9672 0.0011 7 17 5.6236 4.1321 0.0021 8 6 4.6299 1.6320 0.0003 9 6 3.5946 0.6948 0.0000 10 6 3.5469 -0.7692 0.0055 11 6 2.2511 -1.1198 -0.0001 12 6 1.7382 -2.5368 -0.0002 13 1 0.7388 -2.5614 -0.4344 14 8 2.6137 -3.3602 -0.7734 15 6 1.6841 -3.0516 1.4151 16 1 1.9900 -2.4161 2.2329 17 6 1.2439 -4.3340 1.6658 18 7 1.1962 -4.7831 2.9010 19 14 0.7074 -5.4306 0.2519 20 1 1.8760 -6.1963 -0.2516 21 1 -0.3360 -6.3748 0.7262 22 1 0.1559 -4.5924 -0.8428 23 1 -0.3634 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5142 26 1 0.9570 2.8364 0.0012 27 1 2.7994 4.4571 0.0021 28 1 5.6587 1.3031 -0.0001 29 1 4.3937 -1.4396 0.0106 30 1 3.5226 -3.3857 -0.4441 31 1 0.8868 -5.6854 3.0774 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259499831.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:16 Heat of formation + Delta-G solvation = -16.894562 kcal Electronic energy + Delta-G solvation = -17362.013568 eV Core-core repulsion = 14440.931739 eV Total energy + Delta-G solvation = -2921.081829 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.36453 -38.85610 -37.72795 -36.75611 -34.55066 -33.75767 -31.33576 -30.89825 -28.74128 -27.06217 -25.06412 -22.74482 -22.61626 -20.65293 -19.61248 -18.17238 -17.63451 -17.08766 -16.90758 -16.23440 -15.65582 -15.56913 -15.09379 -14.99030 -14.39064 -14.25390 -13.97930 -13.73963 -13.38656 -13.30245 -13.05290 -12.93880 -12.81657 -12.24470 -11.96001 -11.67253 -11.61366 -11.39008 -10.92414 -10.80001 -10.59988 -8.98555 -8.56662 -8.40726 -6.59524 0.09523 0.47281 1.24295 1.40482 1.44188 1.56531 1.75508 1.90875 2.33301 2.80056 2.92713 3.66827 3.76437 3.83075 3.94845 4.08961 4.34814 4.40995 4.47171 4.54179 4.61997 4.72980 4.93600 4.97254 5.03106 5.27660 5.31377 5.35898 5.72357 5.86606 5.99037 6.21598 6.37620 6.54163 6.97697 7.19722 8.72702 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.037302 B = 0.004831 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.451715 B = 5794.080011 C = 6055.823814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.481 5.481 3 C 0.078 3.922 4 C -0.110 4.110 5 C -0.097 4.097 6 C -0.066 4.066 7 Cl -0.073 7.073 8 C -0.072 4.072 9 C -0.118 4.118 10 C -0.226 4.226 11 C 0.085 3.915 12 C 0.259 3.741 13 H 0.072 0.928 14 O -0.575 6.575 15 C -0.555 4.555 16 H 0.034 0.966 17 C 0.039 3.961 18 N -0.930 5.930 19 Si 0.972 3.028 20 H -0.272 1.272 21 H -0.299 1.299 22 H -0.257 1.257 23 H 0.070 0.930 24 H 0.112 0.888 25 H 0.083 0.917 26 H 0.155 0.845 27 H 0.161 0.839 28 H 0.137 0.863 29 H 0.150 0.850 30 H 0.380 0.620 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.401 14.911 -8.084 17.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.164 5.164 3 C -0.029 4.029 4 C -0.130 4.130 5 C -0.116 4.116 6 C -0.094 4.094 7 Cl -0.044 7.044 8 C -0.091 4.091 9 C -0.123 4.123 10 C -0.250 4.250 11 C -0.024 4.024 12 C 0.201 3.799 13 H 0.090 0.910 14 O -0.383 6.383 15 C -0.592 4.592 16 H 0.053 0.947 17 C -0.162 4.162 18 N -0.568 5.568 19 Si 0.798 3.202 20 H -0.198 1.198 21 H -0.226 1.226 22 H -0.182 1.182 23 H 0.089 0.911 24 H 0.130 0.870 25 H 0.102 0.898 26 H 0.173 0.827 27 H 0.179 0.821 28 H 0.155 0.845 29 H 0.168 0.832 30 H 0.229 0.771 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.568 14.741 -8.320 16.937 hybrid contribution 0.475 -0.762 0.423 0.993 sum 1.044 13.979 -7.897 16.089 Atomic orbital electron populations 1.22166 0.75636 1.05340 1.03812 1.43938 1.07067 1.03366 1.62030 1.18722 0.90171 0.89289 1.04726 1.20234 1.00934 0.87535 1.04336 1.20894 0.89268 1.00848 1.00631 1.20304 0.89766 0.89517 1.09769 1.98335 1.50187 1.58565 1.97320 1.20171 0.98950 0.90405 0.99619 1.19240 0.92740 0.93434 1.06929 1.21438 0.95713 0.92888 1.14940 1.21460 0.91216 0.89877 0.99805 1.18250 0.90310 0.81147 0.90241 0.91043 1.86358 1.24757 1.69621 1.57536 1.21435 1.46384 0.99496 0.91900 0.94728 1.25772 0.93335 0.99121 0.98000 1.70049 1.46707 1.18439 1.21587 0.85332 0.77861 0.78126 0.78860 1.19765 1.22617 1.18171 0.91150 0.87006 0.89848 0.82692 0.82106 0.84501 0.83239 0.77079 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.93 10.80 127.77 1.38 3.31 16 2 N -0.48 -16.95 3.18 -524.68 -1.67 -18.62 16 3 C 0.08 2.56 6.81 39.02 0.27 2.83 16 4 C -0.11 -2.75 9.96 22.37 0.22 -2.53 16 5 C -0.10 -2.23 9.79 22.32 0.22 -2.01 16 6 C -0.07 -1.71 6.28 22.08 0.14 -1.57 16 7 Cl -0.07 -1.63 28.93 -2.72 -0.08 -1.71 16 8 C -0.07 -2.16 9.81 22.25 0.22 -1.94 16 9 C -0.12 -4.15 6.37 -20.20 -0.13 -4.28 16 10 C -0.23 -8.72 10.37 23.51 0.24 -8.48 16 11 C 0.08 3.46 5.85 40.87 0.24 3.70 16 12 C 0.26 11.61 2.52 29.10 0.07 11.68 16 13 H 0.07 3.17 5.82 -2.39 -0.01 3.15 16 14 O -0.58 -24.50 10.91 -148.98 -1.63 -26.13 16 15 C -0.55 -29.99 9.33 25.60 0.24 -29.75 16 16 H 0.03 2.13 7.98 -2.91 -0.02 2.11 16 17 C 0.04 2.16 5.47 84.66 0.46 2.63 16 18 N -0.93 -55.31 13.96 21.45 0.30 -55.01 16 19 Si 0.97 44.64 26.18 68.60 1.80 46.44 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.30 -13.47 7.11 99.48 0.71 -12.77 16 22 H -0.26 -11.26 6.54 99.48 0.65 -10.61 16 23 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.11 2.13 8.10 -2.39 -0.02 2.11 16 25 H 0.08 2.28 6.81 -2.39 -0.02 2.26 16 26 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 27 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 28 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 29 H 0.15 5.32 7.49 -2.91 -0.02 5.29 16 30 H 0.38 14.27 8.09 -74.05 -0.60 13.67 16 31 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -65.32 282.20 2.81 -62.52 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.51 Total: 18.92 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 3.57 Total: -26.41 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -1.37 Total: -73.62 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -1.63 Total: -26.13 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.80 Total: 46.44 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.08 Total: -1.71 kcal Total: -65.32 2.81 -62.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259499831.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.622 kcal (2) G-P(sol) polarization free energy of solvation -65.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds