Wall clock time and date at job start Mon Mar 30 2020 06:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.27896 * 124.23347 * 2 1 4 4 C 1.34707 * 117.83663 * 179.78346 * 3 2 1 5 5 C 1.39872 * 111.82111 * 0.41836 * 4 3 2 6 6 C 1.39344 * 120.36574 * 179.79075 * 5 4 3 7 7 C 1.37646 * 120.14765 * 359.78788 * 6 5 4 8 8 C 1.38762 * 120.09550 * 359.97438 * 7 6 5 9 9 C 1.50693 * 119.69996 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47306 * 264.97789 * 9 8 7 11 11 C 1.50701 * 109.47286 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99650 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99841 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99995 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99724 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47414 * 59.99864 * 15 13 11 17 17 H 1.48502 * 109.46989 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46860 * 299.99800 * 15 13 11 19 19 C 1.37417 * 120.59987 * 359.96196 * 8 7 6 20 20 F 1.35104 * 119.86934 * 180.02562 * 19 8 7 21 21 S 1.70644 * 124.23759 * 180.02562 * 2 1 3 22 22 H 1.09002 * 109.46777 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47617 * 299.99893 * 1 2 3 24 24 H 1.08999 * 109.47470 * 60.00266 * 1 2 3 25 25 H 1.08002 * 119.92979 * 179.75732 * 6 5 4 26 26 H 1.07996 * 119.95725 * 179.97438 * 7 6 5 27 27 H 1.09003 * 109.47286 * 24.98171 * 9 8 7 28 28 H 1.09003 * 109.47246 * 144.97823 * 9 8 7 29 29 H 1.08999 * 109.46808 * 300.00218 * 10 9 8 30 30 H 1.09003 * 109.46940 * 59.99847 * 10 9 8 31 31 H 0.97003 * 119.99545 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2265 1.0574 0.0000 4 6 3.5652 0.9073 0.0045 5 6 3.9372 -0.4410 -0.0010 6 6 5.2835 -0.8003 -0.0019 7 6 6.2583 0.1715 -0.0018 8 6 5.9035 1.5130 -0.0014 9 6 6.9780 2.5696 -0.0008 10 6 7.2528 3.0167 1.4364 11 6 8.3279 4.0728 1.4371 12 1 8.7704 4.3934 0.5056 13 6 8.7463 4.6297 2.6269 14 7 8.2070 4.2397 3.7612 15 14 10.0783 5.9394 2.6277 16 1 9.6274 7.1045 1.8252 17 1 10.3460 6.3723 4.0227 18 1 11.3210 5.3818 2.0359 19 6 4.5811 1.8868 -0.0018 20 9 4.2523 3.1972 -0.0019 21 16 2.4671 -1.4107 -0.0006 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 5.5629 -1.8435 -0.0021 26 1 7.3008 -0.1104 -0.0021 27 1 7.8903 2.1603 -0.4348 28 1 6.6471 3.4246 -0.5903 29 1 6.3405 3.4260 1.8703 30 1 7.5837 2.1616 2.0259 31 1 8.5017 4.6313 4.5983 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259506251.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:48 Heat of formation + Delta-G solvation = -9.636317 kcal Electronic energy + Delta-G solvation = -16891.577581 eV Core-core repulsion = 13985.226989 eV Total energy + Delta-G solvation = -2906.350592 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.47248 -40.19416 -37.39005 -33.98996 -32.23414 -31.22449 -29.30661 -28.05015 -25.42880 -23.48786 -22.45764 -21.36709 -19.95856 -18.36920 -17.18109 -16.49286 -16.28556 -15.62445 -15.12967 -14.63310 -14.54220 -14.38298 -13.99319 -13.11662 -12.99793 -12.89644 -12.62615 -12.51040 -12.13232 -11.71153 -11.58653 -11.26639 -10.91015 -10.86143 -10.60661 -9.95789 -9.90480 -9.68768 -9.46978 -9.15693 -8.47986 -8.35941 -7.79175 -6.00568 -4.04131 0.39016 1.14068 1.17643 1.61459 2.33536 3.33787 3.38195 3.40477 3.62536 3.72299 4.40910 4.45354 4.64008 4.95130 5.08944 5.16385 5.23417 5.24237 5.35205 5.54595 5.69892 5.78293 5.98287 6.19669 6.24350 6.51006 6.62571 6.74606 6.99360 7.57386 7.63282 7.74880 7.97306 8.36948 9.01827 9.59952 11.10569 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.037872 B = 0.004323 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.148960 B = 6475.114826 C = 6775.432807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.083 3.917 3 N -0.457 5.457 4 C 0.049 3.951 5 C -0.166 4.166 6 C -0.087 4.087 7 C -0.067 4.067 8 C -0.081 4.081 9 C -0.079 4.079 10 C 0.030 3.970 11 C -0.524 4.524 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.894 3.106 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.151 3.849 20 F -0.118 7.118 21 S 0.088 5.912 22 H 0.081 0.919 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.134 0.866 26 H 0.146 0.854 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.986 -13.354 -8.497 19.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.202 4.202 3 N -0.170 5.170 4 C -0.071 4.071 5 C -0.285 4.285 6 C -0.111 4.111 7 C -0.088 4.088 8 C -0.085 4.085 9 C -0.116 4.116 10 C -0.007 4.007 11 C -0.562 4.562 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C 0.129 3.871 20 F -0.096 7.096 21 S 0.342 5.658 22 H 0.100 0.900 23 H 0.109 0.891 24 H 0.108 0.892 25 H 0.152 0.848 26 H 0.164 0.836 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.573 -13.792 -8.302 20.426 hybrid contribution 1.227 1.668 0.219 2.082 sum -11.345 -12.124 -8.083 18.467 Atomic orbital electron populations 1.20507 0.84881 1.03625 1.04796 1.26628 1.01681 0.90599 1.01305 1.66063 1.03782 1.31434 1.15761 1.18936 0.88897 0.91746 1.07501 1.23481 0.98938 0.95342 1.10715 1.20300 0.88770 1.00203 1.01778 1.21015 0.99954 0.90726 0.97104 1.20320 0.92924 0.96920 0.98293 1.20873 0.93782 0.94330 1.02647 1.19089 0.97096 0.96353 0.88207 1.21159 1.20552 1.21592 0.92871 0.92493 1.25014 0.96754 0.96935 0.95600 1.69962 1.42525 1.43049 0.97720 0.86630 0.82145 0.82081 0.76991 1.20173 1.21271 1.20189 1.16955 0.90519 0.76942 1.02721 1.91526 1.93100 1.31872 1.93081 1.83698 0.95614 1.10902 1.75567 0.90032 0.89087 0.89161 0.84785 0.83584 0.91064 0.91399 0.96284 0.96230 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.46 36.00 0.38 -0.26 16 2 C 0.08 1.08 7.28 -13.92 -0.10 0.97 16 3 N -0.46 -7.80 10.57 -9.06 -0.10 -7.90 16 4 C 0.05 0.88 6.98 -84.90 -0.59 0.29 16 5 C -0.17 -2.53 6.55 -38.56 -0.25 -2.78 16 6 C -0.09 -1.19 10.06 -39.39 -0.40 -1.59 16 7 C -0.07 -1.00 9.66 -39.60 -0.38 -1.39 16 8 C -0.08 -1.50 5.12 -104.73 -0.54 -2.03 16 9 C -0.08 -1.63 5.02 -27.89 -0.14 -1.77 16 10 C 0.03 0.77 4.95 -27.88 -0.14 0.63 16 11 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 15 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.15 2.97 7.29 -38.79 -0.28 2.69 16 20 F -0.12 -2.53 16.50 2.25 0.04 -2.49 16 21 S 0.09 1.03 23.08 -107.50 -2.48 -1.45 16 22 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16 23 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 26 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 27 H 0.07 1.33 8.05 -51.93 -0.42 0.92 16 28 H 0.07 1.42 7.74 -51.93 -0.40 1.02 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 290.88 15.07 4.38 4.38 Total: -1.00 -32.79 290.88 -8.62 -41.41 By element: Atomic # 1 Polarization: -2.15 SS G_CDS: -3.32 Total: -5.46 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -2.86 Total: -18.78 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.64 Total: -34.29 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.48 Total: -1.45 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.79 -8.62 -41.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259506251.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.771 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds