Wall clock time and date at job start Mon Mar 30 2020 06:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.27896 * 124.23347 * 2 1 4 4 C 1.34707 * 117.83663 * 179.78346 * 3 2 1 5 5 C 1.39872 * 111.82111 * 0.41836 * 4 3 2 6 6 C 1.39344 * 120.36574 * 179.79075 * 5 4 3 7 7 C 1.37646 * 120.14765 * 359.78788 * 6 5 4 8 8 C 1.38762 * 120.09550 * 359.97438 * 7 6 5 9 9 C 1.50693 * 119.69996 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47306 * 264.97789 * 9 8 7 11 11 C 1.50701 * 109.47286 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99650 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99841 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99995 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99724 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47414 * 59.99864 * 15 13 11 17 17 H 1.48502 * 109.46989 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46860 * 299.99800 * 15 13 11 19 19 C 1.37417 * 120.59987 * 359.96196 * 8 7 6 20 20 F 1.35104 * 119.86934 * 180.02562 * 19 8 7 21 21 S 1.70644 * 124.23759 * 180.02562 * 2 1 3 22 22 H 1.09002 * 109.46777 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47617 * 299.99893 * 1 2 3 24 24 H 1.08999 * 109.47470 * 60.00266 * 1 2 3 25 25 H 1.08002 * 119.92979 * 179.75732 * 6 5 4 26 26 H 1.07996 * 119.95725 * 179.97438 * 7 6 5 27 27 H 1.09003 * 109.47286 * 24.98171 * 9 8 7 28 28 H 1.09003 * 109.47246 * 144.97823 * 9 8 7 29 29 H 1.08999 * 109.46808 * 300.00218 * 10 9 8 30 30 H 1.09003 * 109.46940 * 59.99847 * 10 9 8 31 31 H 0.97003 * 119.99545 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2265 1.0574 0.0000 4 6 3.5652 0.9073 0.0045 5 6 3.9372 -0.4410 -0.0010 6 6 5.2835 -0.8003 -0.0019 7 6 6.2583 0.1715 -0.0018 8 6 5.9035 1.5130 -0.0014 9 6 6.9780 2.5696 -0.0008 10 6 7.2528 3.0167 1.4364 11 6 8.3279 4.0728 1.4371 12 1 8.7704 4.3934 0.5056 13 6 8.7463 4.6297 2.6269 14 7 8.2070 4.2397 3.7612 15 14 10.0783 5.9394 2.6277 16 1 9.6274 7.1045 1.8252 17 1 10.3460 6.3723 4.0227 18 1 11.3210 5.3818 2.0359 19 6 4.5811 1.8868 -0.0018 20 9 4.2523 3.1972 -0.0019 21 16 2.4671 -1.4107 -0.0006 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 5.5629 -1.8435 -0.0021 26 1 7.3008 -0.1104 -0.0021 27 1 7.8903 2.1603 -0.4348 28 1 6.6471 3.4246 -0.5903 29 1 6.3405 3.4260 1.8703 30 1 7.5837 2.1616 2.0259 31 1 8.5017 4.6313 4.5983 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259506251.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:47 Heat of formation + Delta-G solvation = -29.531095 kcal Electronic energy + Delta-G solvation = -16892.440283 eV Core-core repulsion = 13985.226989 eV Total energy + Delta-G solvation = -2907.213294 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.98119 -41.37120 -38.63515 -35.82745 -33.95720 -32.31197 -30.89370 -29.22364 -27.19573 -24.86210 -23.75507 -22.95309 -21.32990 -19.58157 -18.57912 -18.40291 -17.67109 -17.02768 -16.51654 -16.34018 -15.79965 -15.65700 -15.13469 -14.81284 -14.48228 -14.03525 -13.92738 -13.77237 -13.47486 -13.22677 -12.90230 -12.74933 -12.70269 -12.34312 -12.17851 -11.84018 -11.66526 -11.27557 -10.84204 -10.75072 -10.57509 -9.69143 -8.99190 -8.21260 -6.33924 -0.74458 -0.13693 0.15215 0.53318 1.20927 1.39925 1.43795 1.51536 2.35593 2.42330 2.66128 3.11904 3.17751 3.59194 3.69983 4.02286 4.09211 4.25369 4.41439 4.59392 4.63015 4.68554 4.73685 4.93000 4.97306 5.06486 5.11227 5.21615 5.44646 5.59032 5.66377 5.79303 6.18339 6.48896 6.81957 7.35698 8.90489 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.037872 B = 0.004323 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.148960 B = 6475.114826 C = 6775.432807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.083 3.917 3 N -0.511 5.511 4 C 0.031 3.969 5 C -0.191 4.191 6 C -0.066 4.066 7 C -0.073 4.073 8 C -0.094 4.094 9 C -0.065 4.065 10 C 0.038 3.962 11 C -0.545 4.545 12 H 0.066 0.934 13 C 0.000 4.000 14 N -0.934 5.934 15 Si 0.968 3.032 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.260 1.260 19 C 0.105 3.895 20 F -0.145 7.145 21 S 0.174 5.826 22 H 0.115 0.885 23 H 0.096 0.904 24 H 0.100 0.900 25 H 0.179 0.821 26 H 0.173 0.827 27 H 0.093 0.907 28 H 0.055 0.945 29 H -0.023 1.023 30 H 0.002 0.998 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.084 -15.791 -9.357 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.201 4.201 3 N -0.227 5.227 4 C -0.088 4.088 5 C -0.310 4.310 6 C -0.088 4.088 7 C -0.095 4.095 8 C -0.098 4.098 9 C -0.102 4.102 10 C 0.000 4.000 11 C -0.583 4.583 12 H 0.084 0.916 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.792 3.208 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.185 1.185 19 C 0.083 3.917 20 F -0.124 7.124 21 S 0.429 5.571 22 H 0.134 0.866 23 H 0.115 0.885 24 H 0.119 0.881 25 H 0.197 0.803 26 H 0.190 0.810 27 H 0.112 0.888 28 H 0.074 0.926 29 H -0.005 1.005 30 H 0.020 0.980 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.682 -16.258 -9.182 22.572 hybrid contribution 1.066 2.258 0.488 2.544 sum -11.617 -14.000 -8.694 20.163 Atomic orbital electron populations 1.20791 0.81662 1.06091 1.05502 1.27554 1.03723 0.90735 0.98064 1.66120 1.03749 1.33764 1.19037 1.19064 0.89422 0.92601 1.07747 1.24027 1.01352 0.95291 1.10307 1.20785 0.87694 1.01906 0.98463 1.21308 1.01836 0.89314 0.96994 1.20229 0.91749 0.97939 0.99887 1.20571 0.95746 0.95067 0.98840 1.18896 0.94624 0.95167 0.91269 1.21645 1.21021 1.22203 0.93452 0.91558 1.26018 0.99318 0.99371 0.95081 1.70114 1.44242 1.44615 0.98474 0.85453 0.79223 0.78888 0.77208 1.19470 1.20882 1.18465 1.17400 0.91941 0.76470 1.05898 1.91433 1.93390 1.33761 1.93775 1.83344 0.92126 1.08033 1.73563 0.86633 0.88541 0.88134 0.80333 0.80962 0.88816 0.92596 1.00509 0.98008 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 10.46 71.24 0.75 -0.35 16 2 C 0.08 2.00 7.28 88.68 0.65 2.64 16 3 N -0.51 -17.64 10.57 -182.42 -1.93 -19.57 16 4 C 0.03 1.16 6.98 39.81 0.28 1.44 16 5 C -0.19 -5.48 6.55 22.93 0.15 -5.33 16 6 C -0.07 -1.62 10.06 22.40 0.23 -1.40 16 7 C -0.07 -2.12 9.66 22.26 0.21 -1.91 16 8 C -0.09 -3.63 5.12 -19.93 -0.10 -3.73 16 9 C -0.06 -2.80 5.02 29.85 0.15 -2.65 16 10 C 0.04 2.07 4.95 29.85 0.15 2.22 16 11 C -0.55 -31.72 9.11 25.60 0.23 -31.48 16 12 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 13 C 0.00 0.00 5.46 84.66 0.46 0.46 16 14 N -0.93 -58.47 13.29 21.45 0.28 -58.19 16 15 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 18 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 19 C 0.11 4.40 7.29 22.78 0.17 4.57 16 20 F -0.15 -6.85 16.50 44.97 0.74 -6.11 16 21 S 0.17 3.48 23.08 -56.49 -1.30 2.18 16 22 H 0.12 0.78 8.11 -2.39 -0.02 0.76 16 23 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 26 H 0.17 3.95 8.06 -2.91 -0.02 3.93 16 27 H 0.09 3.53 8.05 -2.39 -0.02 3.51 16 28 H 0.06 2.49 7.74 -2.39 -0.02 2.47 16 29 H -0.02 -1.47 8.14 -2.39 -0.02 -1.49 16 30 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -76.01 290.88 4.28 -71.72 By element: Atomic # 1 Polarization: -2.59 SS G_CDS: 1.15 Total: -1.45 kcal Atomic # 6 Polarization: -38.84 SS G_CDS: 3.32 Total: -35.53 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -1.64 Total: -77.75 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 0.74 Total: -6.11 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -1.30 Total: 2.18 kcal Total: -76.01 4.28 -71.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259506251.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.190 kcal (2) G-P(sol) polarization free energy of solvation -76.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds