Wall clock time and date at job start Mon Mar 30 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00131 * 2 1 4 4 H 1.48499 * 109.47165 * 270.00011 * 3 2 1 5 5 H 1.48501 * 109.46755 * 29.99280 * 3 2 1 6 6 H 1.48495 * 109.47348 * 149.99776 * 3 2 1 7 7 C 1.37880 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00257 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99613 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46938 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46873 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46956 * 179.97438 * 11 10 9 13 13 C 1.36199 * 119.62194 * 99.99691 * 12 11 10 14 14 C 1.40923 * 120.46279 * 180.02562 * 13 12 11 15 15 N 1.34717 * 129.66615 * 180.02562 * 14 13 12 16 16 C 1.27902 * 117.84364 * 179.97438 * 15 14 13 17 17 S 1.70640 * 111.53794 * 0.02562 * 16 15 14 18 18 C 1.39938 * 118.54692 * 359.97438 * 14 13 12 19 19 C 1.39307 * 120.29126 * 0.03675 * 18 14 13 20 20 C 1.37893 * 119.93017 * 0.27705 * 19 18 14 21 21 F 1.35097 * 119.99015 * 179.72201 * 20 19 18 22 22 H 0.96994 * 119.99952 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47065 * 60.00095 * 9 7 2 24 24 H 1.08996 * 109.46896 * 299.99680 * 9 7 2 25 25 H 1.09000 * 109.47234 * 59.99622 * 10 9 7 26 26 H 1.09009 * 109.46931 * 299.99823 * 10 9 7 27 27 H 1.09000 * 109.47497 * 59.99786 * 11 10 9 28 28 H 1.09000 * 109.47386 * 299.99658 * 11 10 9 29 29 H 1.08001 * 119.77004 * 0.02562 * 13 12 11 30 30 H 1.07997 * 124.22951 * 179.97438 * 16 15 14 31 31 H 1.08002 * 120.03132 * 179.97438 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4804 -4.9871 0.0025 12 6 2.4597 -6.1325 0.0031 13 6 2.7409 -6.7772 1.1695 14 6 3.6543 -7.8501 1.1905 15 7 4.0643 -8.6102 2.2245 16 6 4.9125 -9.5371 1.9851 17 16 5.3381 -9.5854 0.3333 18 6 4.2614 -8.2351 -0.0101 19 6 3.9633 -7.5654 -1.1946 20 6 3.0705 -6.5146 -1.1849 21 9 2.7848 -5.8606 -2.3320 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8714 -3.6039 0.8922 26 1 2.8727 -3.6047 -0.8878 27 1 0.8541 -5.0455 -0.8877 28 1 0.8534 -5.0442 0.8922 29 1 2.2606 -6.4638 2.0846 30 1 5.3103 -10.2050 2.7347 31 1 4.4347 -7.8658 -2.1188 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259508101.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:46 Heat of formation + Delta-G solvation = -9.042514 kcal Electronic energy + Delta-G solvation = -16653.781901 eV Core-core repulsion = 13747.457059 eV Total energy + Delta-G solvation = -2906.324843 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.91280 -40.50500 -37.32449 -34.56692 -32.66031 -30.83444 -29.65400 -26.95789 -25.05074 -23.84031 -22.79695 -20.95256 -20.08167 -18.74498 -17.41863 -17.04394 -16.28484 -15.73531 -15.31919 -14.69275 -14.62590 -14.45533 -14.20748 -13.81695 -13.41173 -13.08806 -12.57740 -12.45497 -11.96174 -11.47621 -11.31217 -11.05020 -10.81812 -10.73896 -10.48722 -10.20568 -9.91001 -9.70466 -9.37227 -9.10246 -8.55839 -8.33269 -8.25961 -5.98415 -4.00551 0.16122 0.88911 0.98754 1.46342 2.06653 3.33470 3.39334 3.40257 3.43404 3.76614 4.14925 4.36075 4.47522 4.72555 4.94051 5.00334 5.24644 5.37477 5.52080 5.66248 5.80267 5.93387 5.95757 6.17474 6.23934 6.58260 6.70490 6.83183 7.10737 7.34820 7.68687 7.82673 8.01502 8.44240 9.06314 9.63435 11.12952 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.035153 B = 0.003757 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.330612 B = 7450.918868 C = 7650.175629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.105 4.105 11 C -0.085 4.085 12 C -0.084 4.084 13 C -0.035 4.035 14 C 0.067 3.933 15 N -0.457 5.457 16 C 0.060 3.940 17 S 0.095 5.905 18 C -0.163 4.163 19 C -0.115 4.115 20 C 0.132 3.868 21 F -0.121 7.121 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.147 0.853 30 H 0.204 0.796 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.011 -20.953 0.444 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.142 4.142 11 C -0.122 4.122 12 C -0.088 4.088 13 C -0.056 4.056 14 C -0.052 4.052 15 N -0.168 5.168 16 C -0.245 4.245 17 S 0.348 5.652 18 C -0.282 4.282 19 C -0.139 4.139 20 C 0.109 3.891 21 F -0.100 7.100 22 H 0.070 0.930 23 H 0.036 0.964 24 H 0.035 0.965 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.164 0.836 30 H 0.221 0.779 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.347 -21.405 0.463 23.361 hybrid contribution -0.083 1.641 -0.112 1.647 sum 9.264 -19.764 0.351 21.830 Atomic orbital electron populations 1.69959 1.06038 1.26580 1.50954 1.25016 0.94841 0.99222 0.95346 0.86606 0.79868 0.83508 0.78110 1.20660 1.21215 1.19889 1.21252 0.93046 0.91080 1.50471 0.92729 1.19108 0.93931 0.91157 0.97354 1.21657 0.99178 0.92670 1.00728 1.20848 0.95839 0.91919 1.03621 1.19855 0.99327 0.98463 0.91146 1.20191 0.95123 0.91906 0.98397 1.19209 1.00722 0.98834 0.86434 1.66191 1.12342 1.05501 1.32813 1.28067 0.97825 0.99511 0.99074 1.83914 1.43996 1.30521 1.06817 1.23432 1.04043 1.02452 0.98292 1.20089 1.00189 0.96374 0.97216 1.17334 0.96970 0.92345 0.82423 1.91558 1.91877 1.79455 1.47063 0.93014 0.96431 0.96452 0.93091 0.93096 0.90410 0.90326 0.83567 0.77946 0.83977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.10 -2.16 5.13 -26.73 -0.14 -2.30 16 11 C -0.08 -1.42 5.04 -27.88 -0.14 -1.56 16 12 C -0.08 -1.26 5.09 -105.09 -0.54 -1.80 16 13 C -0.04 -0.50 9.64 -39.30 -0.38 -0.88 16 14 C 0.07 0.93 7.00 -84.95 -0.59 0.33 16 15 N -0.46 -5.85 10.57 -12.97 -0.14 -5.99 16 16 C 0.06 0.56 12.10 51.13 0.62 1.17 16 17 S 0.09 0.86 23.17 -107.50 -2.49 -1.63 16 18 C -0.16 -2.04 6.55 -38.55 -0.25 -2.29 16 19 C -0.11 -1.43 10.05 -39.31 -0.40 -1.82 16 20 C 0.13 1.91 7.23 -39.45 -0.29 1.62 16 21 F -0.12 -1.89 16.64 2.25 0.04 -1.85 16 22 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.05 1.07 8.14 -51.92 -0.42 0.64 16 27 H 0.08 1.30 7.94 -51.93 -0.41 0.89 16 28 H 0.08 1.23 7.95 -51.93 -0.41 0.82 16 29 H 0.15 1.89 7.99 -52.49 -0.42 1.47 16 30 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 290.50 15.07 4.38 4.38 Total: -1.00 -31.71 290.50 -8.47 -40.18 By element: Atomic # 1 Polarization: -1.49 SS G_CDS: -3.32 Total: -4.81 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -2.65 Total: -20.77 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.60 Total: -32.35 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.49 Total: -1.63 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.71 -8.47 -40.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259508101.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.135 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds