Wall clock time and date at job start Mon Mar 30 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00131 * 2 1 4 4 H 1.48499 * 109.47165 * 270.00011 * 3 2 1 5 5 H 1.48501 * 109.46755 * 29.99280 * 3 2 1 6 6 H 1.48495 * 109.47348 * 149.99776 * 3 2 1 7 7 C 1.37880 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00257 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99613 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46938 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46873 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46956 * 179.97438 * 11 10 9 13 13 C 1.36199 * 119.62194 * 99.99691 * 12 11 10 14 14 C 1.40923 * 120.46279 * 180.02562 * 13 12 11 15 15 N 1.34717 * 129.66615 * 180.02562 * 14 13 12 16 16 C 1.27902 * 117.84364 * 179.97438 * 15 14 13 17 17 S 1.70640 * 111.53794 * 0.02562 * 16 15 14 18 18 C 1.39938 * 118.54692 * 359.97438 * 14 13 12 19 19 C 1.39307 * 120.29126 * 0.03675 * 18 14 13 20 20 C 1.37893 * 119.93017 * 0.27705 * 19 18 14 21 21 F 1.35097 * 119.99015 * 179.72201 * 20 19 18 22 22 H 0.96994 * 119.99952 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47065 * 60.00095 * 9 7 2 24 24 H 1.08996 * 109.46896 * 299.99680 * 9 7 2 25 25 H 1.09000 * 109.47234 * 59.99622 * 10 9 7 26 26 H 1.09009 * 109.46931 * 299.99823 * 10 9 7 27 27 H 1.09000 * 109.47497 * 59.99786 * 11 10 9 28 28 H 1.09000 * 109.47386 * 299.99658 * 11 10 9 29 29 H 1.08001 * 119.77004 * 0.02562 * 13 12 11 30 30 H 1.07997 * 124.22951 * 179.97438 * 16 15 14 31 31 H 1.08002 * 120.03132 * 179.97438 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4804 -4.9871 0.0025 12 6 2.4597 -6.1325 0.0031 13 6 2.7409 -6.7772 1.1695 14 6 3.6543 -7.8501 1.1905 15 7 4.0643 -8.6102 2.2245 16 6 4.9125 -9.5371 1.9851 17 16 5.3381 -9.5854 0.3333 18 6 4.2614 -8.2351 -0.0101 19 6 3.9633 -7.5654 -1.1946 20 6 3.0705 -6.5146 -1.1849 21 9 2.7848 -5.8606 -2.3320 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8714 -3.6039 0.8922 26 1 2.8727 -3.6047 -0.8878 27 1 0.8541 -5.0455 -0.8877 28 1 0.8534 -5.0442 0.8922 29 1 2.2606 -6.4638 2.0846 30 1 5.3103 -10.2050 2.7347 31 1 4.4347 -7.8658 -2.1188 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259508101.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:45 Heat of formation + Delta-G solvation = -27.060528 kcal Electronic energy + Delta-G solvation = -16654.563221 eV Core-core repulsion = 13747.457059 eV Total energy + Delta-G solvation = -2907.106162 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.03330 -41.44805 -38.39144 -36.22304 -34.47061 -32.27142 -30.78749 -28.60037 -26.10169 -25.36337 -23.95889 -22.42716 -21.53173 -19.66635 -18.52157 -18.36671 -18.03592 -16.86545 -16.56277 -16.31230 -15.73297 -15.61960 -15.34155 -15.02565 -14.58502 -14.36627 -14.27903 -13.88967 -13.37320 -13.10777 -12.88674 -12.59712 -12.45181 -12.29659 -11.98512 -11.52344 -11.37780 -11.31443 -10.99138 -10.71746 -10.55570 -9.61173 -9.14986 -8.20322 -6.31411 -0.74659 -0.13478 0.17308 0.65757 1.16136 1.39325 1.40770 1.51953 2.37744 2.41836 2.93390 3.11545 3.12667 3.41973 3.63427 4.01586 4.07026 4.28690 4.33425 4.41357 4.58578 4.69191 4.78871 4.85358 4.99072 5.15739 5.19823 5.23230 5.49443 5.53713 5.74051 5.85083 6.24876 6.51349 6.84882 7.37600 8.91434 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.035153 B = 0.003757 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.330612 B = 7450.918868 C = 7650.175629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.090 4.090 11 C -0.075 4.075 12 C -0.094 4.094 13 C -0.044 4.044 14 C 0.058 3.942 15 N -0.496 5.496 16 C 0.074 3.926 17 S 0.162 5.838 18 C -0.188 4.188 19 C -0.101 4.101 20 C 0.106 3.894 21 F -0.135 7.135 22 H 0.264 0.736 23 H -0.007 1.007 24 H -0.002 1.002 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.149 0.851 30 H 0.247 0.753 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.296 -22.554 0.802 25.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.127 4.127 11 C -0.112 4.112 12 C -0.097 4.097 13 C -0.065 4.065 14 C -0.062 4.062 15 N -0.209 5.209 16 C -0.230 4.230 17 S 0.416 5.584 18 C -0.307 4.307 19 C -0.124 4.124 20 C 0.084 3.916 21 F -0.113 7.113 22 H 0.073 0.927 23 H 0.012 0.988 24 H 0.016 0.984 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.167 0.833 30 H 0.262 0.738 31 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 11.649 -23.031 0.813 25.822 hybrid contribution -0.703 1.948 -0.174 2.078 sum 10.947 -21.083 0.640 23.764 Atomic orbital electron populations 1.70087 1.07726 1.27798 1.51627 1.25963 0.95789 1.03284 0.94681 0.85466 0.78677 0.78506 0.78525 1.19762 1.20498 1.18869 1.21695 0.93451 0.92556 1.50658 0.92523 1.19015 0.94359 0.92752 0.95155 1.21394 0.98023 0.92933 1.00387 1.20605 0.95983 0.90879 1.03760 1.19577 0.99685 0.98433 0.92051 1.20221 0.95706 0.92481 0.98108 1.19357 1.00571 0.98773 0.87465 1.66258 1.14579 1.07159 1.32944 1.28908 0.95526 0.98111 1.00496 1.83753 1.41494 1.27502 1.05679 1.23818 1.05024 1.03990 0.97836 1.20298 0.98816 0.95010 0.98301 1.17490 0.98539 0.93703 0.81892 1.91517 1.92223 1.79972 1.47608 0.92709 0.98836 0.98381 0.92989 0.93684 0.90934 0.89610 0.83294 0.73763 0.81544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 2 C 0.00 0.03 5.46 84.66 0.46 0.50 16 3 Si 0.96 45.12 29.54 68.60 2.03 47.14 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.55 -31.99 9.11 25.60 0.23 -31.76 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.02 1.31 4.97 29.85 0.15 1.46 16 10 C -0.09 -3.84 5.13 30.59 0.16 -3.68 16 11 C -0.07 -2.61 5.04 29.85 0.15 -2.46 16 12 C -0.09 -2.86 5.09 -20.17 -0.10 -2.96 16 13 C -0.04 -1.26 9.64 22.45 0.22 -1.04 16 14 C 0.06 1.54 7.00 39.77 0.28 1.81 16 15 N -0.50 -11.68 10.57 -194.77 -2.06 -13.74 16 16 C 0.07 1.08 12.10 130.81 1.58 2.66 16 17 S 0.16 2.32 23.17 -56.49 -1.31 1.01 16 18 C -0.19 -4.29 6.55 22.94 0.15 -4.14 16 19 C -0.10 -2.37 10.05 22.45 0.23 -2.15 16 20 C 0.11 3.09 7.23 22.36 0.16 3.25 16 21 F -0.13 -4.30 16.64 44.97 0.75 -3.55 16 22 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 23 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 24 H 0.00 -0.13 8.14 -2.39 -0.02 -0.14 16 25 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 27 H 0.07 2.56 7.94 -2.39 -0.02 2.54 16 28 H 0.09 2.80 7.95 -2.39 -0.02 2.78 16 29 H 0.15 3.94 7.99 -2.91 -0.02 3.92 16 30 H 0.25 1.20 8.06 -2.91 -0.02 1.18 16 31 H 0.17 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -69.65 290.50 4.50 -65.15 By element: Atomic # 1 Polarization: -1.35 SS G_CDS: 1.14 Total: -0.21 kcal Atomic # 6 Polarization: -42.18 SS G_CDS: 3.66 Total: -38.52 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: -1.77 Total: -71.03 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.75 Total: -3.55 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -1.31 Total: 1.01 kcal Total: -69.65 4.50 -65.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259508101.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.094 kcal (2) G-P(sol) polarization free energy of solvation -69.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds