Wall clock time and date at job start Mon Mar 30 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 119.99929 * 2 1 4 4 H 1.48492 * 109.47341 * 240.00498 * 3 2 1 5 5 H 1.48503 * 109.46678 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46943 * 120.00022 * 3 2 1 7 7 C 1.37875 * 120.00679 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00671 * 187.28456 * 7 2 1 9 9 C 1.50706 * 119.99583 * 7.28031 * 7 2 1 10 10 H 1.09006 * 109.47179 * 330.50425 * 9 7 2 11 11 C 1.53003 * 109.47083 * 210.50381 * 9 7 2 12 12 N 1.46902 * 109.47172 * 65.30329 * 11 9 7 13 13 C 1.50696 * 109.46972 * 90.49964 * 9 7 2 14 14 C 1.34004 * 124.92915 * 240.02647 * 13 9 7 15 15 C 1.46781 * 106.18820 * 179.97438 * 14 13 9 16 16 C 1.39432 * 134.36022 * 179.97438 * 15 14 13 17 17 C 1.36731 * 119.74226 * 180.02562 * 16 15 14 18 18 C 1.38734 * 120.42606 * 359.97438 * 17 16 15 19 19 C 1.37949 * 120.67405 * 0.02562 * 18 17 16 20 20 Cl 1.73595 * 120.10524 * 180.02562 * 19 18 17 21 21 C 1.39045 * 119.79326 * 0.02562 * 19 18 17 22 22 O 1.34450 * 124.92619 * 59.97972 * 13 9 7 23 23 H 0.96999 * 120.00523 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46600 * 185.30262 * 11 9 7 25 25 H 1.09004 * 109.46656 * 305.30209 * 11 9 7 26 26 H 1.00900 * 111.00210 * 56.04234 * 12 11 9 27 27 H 1.00899 * 110.99591 * 180.02562 * 12 11 9 28 28 H 1.07999 * 126.90365 * 359.97438 * 14 13 9 29 29 H 1.08009 * 120.12839 * 0.05807 * 16 15 14 30 30 H 1.07999 * 119.78423 * 179.97438 * 17 16 15 31 31 H 1.08004 * 119.66202 * 179.74276 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0780 -1.1978 0.1180 9 6 1.2602 -2.4938 -0.1665 10 1 0.2537 -2.3904 0.2389 11 6 2.0000 -3.6043 0.5821 12 7 1.9690 -3.3274 2.0244 13 6 1.1787 -2.8426 -1.6303 14 6 0.0402 -2.9991 -2.3195 15 6 0.4360 -3.3292 -3.6939 16 6 -0.2612 -3.6051 -4.8695 17 6 0.4278 -3.8836 -6.0172 18 6 1.8151 -3.8928 -6.0192 19 6 2.5223 -3.6224 -4.8660 20 17 4.2581 -3.6372 -4.8854 21 6 1.8405 -3.3378 -3.6881 22 8 2.2378 -3.0410 -2.4344 23 1 -0.4851 0.8400 0.0004 24 1 1.5152 -4.5605 0.3851 25 1 3.0349 -3.6447 0.2420 26 1 1.0205 -3.2211 2.3519 27 1 2.4518 -4.0470 2.5412 28 1 -0.9662 -2.9019 -1.9400 29 1 -1.3412 -3.5983 -4.8736 30 1 -0.1114 -4.0977 -6.9281 31 1 2.3469 -4.1185 -6.9318 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259519430.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:17 Heat of formation + Delta-G solvation = 13.334015 kcal Electronic energy + Delta-G solvation = -17455.364919 eV Core-core repulsion = 14535.593899 eV Total energy + Delta-G solvation = -2919.771019 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.78625 -37.74438 -36.15025 -35.30430 -32.46522 -31.98050 -30.06547 -29.77334 -27.25273 -24.38242 -22.62740 -22.12916 -20.77944 -19.93339 -17.00407 -16.98176 -16.04815 -15.51974 -15.43731 -14.76831 -14.48216 -14.12897 -13.72600 -13.16329 -12.88419 -12.64325 -12.48269 -12.11801 -11.85581 -11.44588 -11.27258 -11.00532 -10.85854 -10.79456 -10.68406 -10.60880 -9.81758 -9.33965 -9.24216 -8.58388 -8.17674 -7.81487 -7.42419 -6.16588 -4.16018 1.19999 1.65176 2.34437 3.13320 3.32714 3.34670 3.38705 3.41532 3.97087 4.38485 4.90987 5.01633 5.27143 5.30326 5.44338 5.46927 5.58897 5.99039 6.03192 6.12043 6.26902 6.32047 6.42527 6.58825 6.64470 6.81983 6.95203 7.16473 7.32383 7.79820 7.89235 7.93977 8.19460 8.22155 8.88164 9.46032 10.91939 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.018235 B = 0.006571 C = 0.006444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.174735 B = 4260.117695 C = 4343.985326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.488 4.488 8 H 0.064 0.936 9 C 0.096 3.904 10 H 0.093 0.907 11 C 0.077 3.923 12 N -0.830 5.830 13 C 0.120 3.880 14 C -0.257 4.257 15 C -0.099 4.099 16 C -0.080 4.080 17 C -0.133 4.133 18 C -0.110 4.110 19 C -0.018 4.018 20 Cl -0.072 7.072 21 C 0.040 3.960 22 O -0.176 6.176 23 H 0.265 0.735 24 H 0.000 1.000 25 H 0.062 0.938 26 H 0.337 0.663 27 H 0.324 0.676 28 H 0.152 0.848 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.229 -8.408 -7.769 11.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.525 4.525 8 H 0.082 0.918 9 C 0.077 3.923 10 H 0.111 0.889 11 C -0.054 4.054 12 N -0.358 5.358 13 C 0.070 3.930 14 C -0.276 4.276 15 C -0.100 4.100 16 C -0.098 4.098 17 C -0.151 4.151 18 C -0.129 4.129 19 C -0.045 4.045 20 Cl -0.043 7.043 21 C -0.009 4.009 22 O -0.076 6.076 23 H 0.075 0.925 24 H 0.018 0.982 25 H 0.080 0.920 26 H 0.149 0.851 27 H 0.135 0.865 28 H 0.170 0.830 29 H 0.144 0.856 30 H 0.148 0.852 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.916 -7.592 -7.863 10.968 hybrid contribution -0.161 0.191 -0.167 0.301 sum 0.755 -7.401 -8.030 10.946 Atomic orbital electron populations 1.69868 1.06014 1.27346 1.49029 1.25003 0.94913 0.99616 0.94053 0.86578 0.79712 0.82472 0.78942 1.20126 1.21262 1.19811 1.20765 0.93970 0.88761 1.48963 0.91799 1.17985 1.00316 0.93982 0.79974 0.88945 1.21808 1.00282 0.94826 0.88477 1.58425 1.21786 1.51818 1.03773 1.24367 0.82740 0.90191 0.95669 1.22069 0.99672 1.15246 0.90609 1.20058 0.92058 1.02523 0.95390 1.20308 0.99874 0.98811 0.90832 1.20549 0.93086 1.03207 0.98275 1.20630 0.94142 1.02455 0.95701 1.19672 0.84107 1.08931 0.91754 1.98349 1.09973 1.97193 1.98806 1.19273 0.92665 1.03205 0.85778 1.84126 1.35986 1.71512 1.15996 0.92541 0.98158 0.91962 0.85091 0.86537 0.83026 0.85577 0.85247 0.84679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.44 12.83 55.43 0.71 -23.73 16 2 C 0.07 1.83 5.45 -17.82 -0.10 1.73 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.49 -13.00 8.02 -34.44 -0.28 -13.28 16 8 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 9 C 0.10 2.28 2.41 -92.92 -0.22 2.05 16 10 H 0.09 2.32 7.28 -51.93 -0.38 1.94 16 11 C 0.08 1.56 6.14 -3.82 -0.02 1.54 16 12 N -0.83 -15.34 9.35 -10.36 -0.10 -15.44 16 13 C 0.12 2.77 5.72 -35.80 -0.20 2.56 16 14 C -0.26 -5.50 10.97 -37.62 -0.41 -5.91 16 15 C -0.10 -1.94 6.40 -105.16 -0.67 -2.61 16 16 C -0.08 -1.26 10.05 -39.68 -0.40 -1.65 16 17 C -0.13 -1.79 9.98 -39.94 -0.40 -2.19 16 18 C -0.11 -1.58 9.80 -39.50 -0.39 -1.97 16 19 C -0.02 -0.31 6.33 -39.39 -0.25 -0.56 16 20 Cl -0.07 -1.17 28.97 -51.86 -1.50 -2.68 16 21 C 0.04 0.82 7.21 -38.45 -0.28 0.54 16 22 O -0.18 -4.06 10.58 3.87 0.04 -4.02 16 23 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.00 0.01 8.14 -51.93 -0.42 -0.42 16 25 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.34 5.95 8.99 -39.29 -0.35 5.60 16 27 H 0.32 4.90 9.08 -39.29 -0.36 4.54 16 28 H 0.15 3.06 8.06 -52.49 -0.42 2.64 16 29 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 30 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 291.07 15.07 4.39 4.39 Total: -1.00 -28.80 291.07 -8.28 -37.07 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -3.17 Total: 7.68 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -3.62 Total: -19.74 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.61 Total: -39.17 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: 0.04 Total: -4.02 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.50 Total: -2.68 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.80 -8.28 -37.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259519430.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.408 kcal (2) G-P(sol) polarization free energy of solvation -28.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds