Wall clock time and date at job start Mon Mar 30 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86807 * 119.99929 * 2 1 4 4 H 1.48492 * 109.47341 * 240.00498 * 3 2 1 5 5 H 1.48503 * 109.46678 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46943 * 120.00022 * 3 2 1 7 7 C 1.37875 * 120.00679 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00671 * 187.28456 * 7 2 1 9 9 C 1.50706 * 119.99583 * 7.28031 * 7 2 1 10 10 H 1.09006 * 109.47179 * 330.50425 * 9 7 2 11 11 C 1.53003 * 109.47083 * 210.50381 * 9 7 2 12 12 N 1.46902 * 109.47172 * 65.30329 * 11 9 7 13 13 C 1.50696 * 109.46972 * 90.49964 * 9 7 2 14 14 C 1.34004 * 124.92915 * 240.02647 * 13 9 7 15 15 C 1.46781 * 106.18820 * 179.97438 * 14 13 9 16 16 C 1.39432 * 134.36022 * 179.97438 * 15 14 13 17 17 C 1.36731 * 119.74226 * 180.02562 * 16 15 14 18 18 C 1.38734 * 120.42606 * 359.97438 * 17 16 15 19 19 C 1.37949 * 120.67405 * 0.02562 * 18 17 16 20 20 Cl 1.73595 * 120.10524 * 180.02562 * 19 18 17 21 21 C 1.39045 * 119.79326 * 0.02562 * 19 18 17 22 22 O 1.34450 * 124.92619 * 59.97972 * 13 9 7 23 23 H 0.96999 * 120.00523 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46600 * 185.30262 * 11 9 7 25 25 H 1.09004 * 109.46656 * 305.30209 * 11 9 7 26 26 H 1.00900 * 111.00210 * 56.04234 * 12 11 9 27 27 H 1.00899 * 110.99591 * 180.02562 * 12 11 9 28 28 H 1.07999 * 126.90365 * 359.97438 * 14 13 9 29 29 H 1.08009 * 120.12839 * 0.05807 * 16 15 14 30 30 H 1.07999 * 119.78423 * 179.97438 * 17 16 15 31 31 H 1.08004 * 119.66202 * 179.74276 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0780 -1.1978 0.1180 9 6 1.2602 -2.4938 -0.1665 10 1 0.2537 -2.3904 0.2389 11 6 2.0000 -3.6043 0.5821 12 7 1.9690 -3.3274 2.0244 13 6 1.1787 -2.8426 -1.6303 14 6 0.0402 -2.9991 -2.3195 15 6 0.4360 -3.3292 -3.6939 16 6 -0.2612 -3.6051 -4.8695 17 6 0.4278 -3.8836 -6.0172 18 6 1.8151 -3.8928 -6.0192 19 6 2.5223 -3.6224 -4.8660 20 17 4.2581 -3.6372 -4.8854 21 6 1.8405 -3.3378 -3.6881 22 8 2.2378 -3.0410 -2.4344 23 1 -0.4851 0.8400 0.0004 24 1 1.5152 -4.5605 0.3851 25 1 3.0349 -3.6447 0.2420 26 1 1.0205 -3.2211 2.3519 27 1 2.4518 -4.0470 2.5412 28 1 -0.9662 -2.9019 -1.9400 29 1 -1.3412 -3.5983 -4.8736 30 1 -0.1114 -4.0977 -6.9281 31 1 2.3469 -4.1185 -6.9318 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259519430.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:16 Heat of formation + Delta-G solvation = -4.458698 kcal Electronic energy + Delta-G solvation = -17456.136469 eV Core-core repulsion = 14535.593899 eV Total energy + Delta-G solvation = -2920.542569 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.31366 -39.06469 -37.43224 -37.02262 -34.33400 -33.52081 -31.60552 -31.12417 -28.86412 -26.28257 -24.00658 -23.56570 -22.30870 -21.58288 -18.85824 -18.42867 -17.53073 -17.07397 -16.90764 -16.62142 -15.92201 -15.53051 -15.29536 -14.67809 -14.50670 -14.12544 -13.97654 -13.87132 -13.25185 -13.01864 -12.73560 -12.66220 -12.55045 -12.54002 -12.22071 -11.97409 -11.66952 -11.23906 -10.71515 -10.63894 -9.53599 -9.32907 -8.93515 -8.19528 -6.24298 -0.11215 0.34141 1.05986 1.37075 1.39442 1.46626 1.57053 1.89874 2.40617 2.66895 3.10685 3.62535 3.76392 4.00032 4.07178 4.28397 4.31348 4.39535 4.51455 4.68355 4.80016 4.85536 4.94201 5.13181 5.29116 5.40804 5.43636 5.56523 5.70636 5.79511 6.11165 6.35806 6.49541 6.81453 6.85236 7.39350 8.87558 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.018235 B = 0.006571 C = 0.006444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.174735 B = 4260.117695 C = 4343.985326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.025 3.975 3 Si 0.944 3.056 4 H -0.282 1.282 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.498 4.498 8 H 0.046 0.954 9 C 0.100 3.900 10 H 0.072 0.928 11 C 0.087 3.913 12 N -0.839 5.839 13 C 0.086 3.914 14 C -0.257 4.257 15 C -0.124 4.124 16 C -0.080 4.080 17 C -0.114 4.114 18 C -0.090 4.090 19 C -0.040 4.040 20 Cl -0.070 7.070 21 C 0.009 3.991 22 O -0.201 6.201 23 H 0.264 0.736 24 H 0.017 0.983 25 H 0.050 0.950 26 H 0.342 0.658 27 H 0.344 0.656 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.181 0.819 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 -9.212 -10.271 13.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.176 4.176 3 Si 0.770 3.230 4 H -0.208 1.208 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.081 3.919 10 H 0.090 0.910 11 C -0.044 4.044 12 N -0.369 5.369 13 C 0.037 3.963 14 C -0.276 4.276 15 C -0.125 4.125 16 C -0.097 4.097 17 C -0.132 4.132 18 C -0.108 4.108 19 C -0.067 4.067 20 Cl -0.041 7.041 21 C -0.039 4.039 22 O -0.102 6.102 23 H 0.073 0.927 24 H 0.035 0.965 25 H 0.068 0.932 26 H 0.154 0.846 27 H 0.157 0.843 28 H 0.172 0.828 29 H 0.171 0.829 30 H 0.198 0.802 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.519 -8.412 -10.354 13.350 hybrid contribution -0.035 0.310 0.419 0.523 sum 0.483 -8.102 -9.934 12.828 Atomic orbital electron populations 1.69952 1.06753 1.27663 1.50384 1.25590 0.95660 1.02043 0.94261 0.85820 0.78754 0.79792 0.78626 1.20764 1.20451 1.19276 1.20910 0.93271 0.90515 1.48829 0.93543 1.17785 0.99008 0.93926 0.81218 0.91020 1.21588 0.99146 0.94493 0.89138 1.58336 1.22483 1.53021 1.03079 1.24003 0.83552 0.93152 0.95551 1.22239 0.99241 1.14092 0.91992 1.20259 0.92112 1.04343 0.95826 1.20758 1.01441 0.97557 0.89989 1.21150 0.92777 1.00161 0.99134 1.21243 0.94849 0.99071 0.95631 1.20051 0.84653 1.10182 0.91830 1.98344 1.09699 1.97248 1.98787 1.19808 0.93827 1.04680 0.85592 1.84021 1.36283 1.72521 1.17382 0.92659 0.96488 0.93168 0.84551 0.84278 0.82830 0.82884 0.80166 0.80847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.47 12.83 21.45 0.28 -51.19 16 2 C 0.02 1.38 5.45 84.66 0.46 1.84 16 3 Si 0.94 44.87 29.54 68.60 2.03 46.89 16 4 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.50 -27.52 8.02 25.60 0.21 -27.31 16 8 H 0.05 2.66 7.82 -2.91 -0.02 2.63 16 9 C 0.10 4.90 2.41 -12.28 -0.03 4.87 16 10 H 0.07 3.77 7.28 -2.38 -0.02 3.75 16 11 C 0.09 3.65 6.14 86.30 0.53 4.18 16 12 N -0.84 -31.35 9.35 -186.70 -1.75 -33.09 16 13 C 0.09 4.15 5.72 24.72 0.14 4.29 16 14 C -0.26 -11.25 10.97 23.54 0.26 -10.99 16 15 C -0.12 -4.79 6.40 -20.22 -0.13 -4.92 16 16 C -0.08 -2.23 10.05 22.20 0.22 -2.01 16 17 C -0.11 -2.48 9.98 22.04 0.22 -2.26 16 18 C -0.09 -2.17 9.80 22.32 0.22 -1.95 16 19 C -0.04 -1.34 6.33 22.39 0.14 -1.19 16 20 Cl -0.07 -2.19 28.97 -2.72 -0.08 -2.27 16 21 C 0.01 0.37 7.21 23.00 0.17 0.53 16 22 O -0.20 -9.59 10.58 -9.07 -0.10 -9.68 16 23 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 24 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.34 12.24 8.99 -89.69 -0.81 11.44 16 27 H 0.34 10.28 9.08 -89.69 -0.81 9.47 16 28 H 0.15 6.41 8.06 -2.91 -0.02 6.38 16 29 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 30 H 0.18 2.18 8.06 -2.91 -0.02 2.15 16 31 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -64.77 291.07 2.35 -62.42 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -0.44 Total: 21.83 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 2.41 Total: -34.91 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -1.47 Total: -84.29 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.10 Total: -9.68 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.08 Total: -2.27 kcal Total: -64.77 2.35 -62.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259519430.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.962 kcal (2) G-P(sol) polarization free energy of solvation -64.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds