Wall clock time and date at job start Mon Mar 30 2020 06:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99884 * 2 1 4 4 H 1.48496 * 109.47088 * 269.99804 * 3 2 1 5 5 H 1.48494 * 109.47328 * 30.00141 * 3 2 1 6 6 H 1.48507 * 109.46959 * 150.00196 * 3 2 1 7 7 C 1.37883 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99778 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99615 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.47065 * 299.99964 * 9 7 2 11 11 C 1.52998 * 109.46973 * 60.00158 * 9 7 2 12 12 N 1.46905 * 109.46978 * 184.99742 * 11 9 7 13 13 C 1.50702 * 109.46886 * 179.97438 * 9 7 2 14 14 C 1.34003 * 124.92512 * 119.72058 * 13 9 7 15 15 C 1.46774 * 106.18488 * 179.89971 * 14 13 9 16 16 C 1.39450 * 134.35566 * 180.09451 * 15 14 13 17 17 C 1.36732 * 119.73711 * 180.29169 * 16 15 14 18 18 C 1.38738 * 120.42796 * 0.02562 * 17 16 15 19 19 C 1.37951 * 120.67416 * 359.97438 * 18 17 16 20 20 Cl 1.73593 * 120.10234 * 180.02562 * 19 18 17 21 21 C 1.39048 * 119.79436 * 0.02562 * 19 18 17 22 22 O 1.34444 * 124.92577 * 300.02762 * 13 9 7 23 23 H 0.96996 * 120.00304 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47288 * 64.99642 * 11 9 7 25 25 H 1.08995 * 109.47151 * 304.99702 * 11 9 7 26 26 H 1.00901 * 110.99869 * 180.02562 * 12 11 9 27 27 H 1.00896 * 110.99543 * 303.95346 * 12 11 9 28 28 H 1.08001 * 126.90347 * 0.02562 * 14 13 9 29 29 H 1.07998 * 120.12698 * 0.31118 * 16 15 14 30 30 H 1.07995 * 119.78214 * 180.02562 * 17 16 15 31 31 H 1.08002 * 119.66534 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3709 -2.5799 -1.2495 12 7 -0.4524 -3.7951 -1.1906 13 6 2.2303 -3.6446 -0.0018 14 6 2.3155 -4.5821 0.9519 15 6 3.3945 -5.4879 0.5399 16 6 3.9634 -6.6382 1.0856 17 6 4.9911 -7.2614 0.4336 18 6 5.4712 -6.7563 -0.7660 19 6 4.9213 -5.6195 -1.3214 20 17 5.5331 -5.0008 -2.8235 21 6 3.8754 -4.9709 -0.6742 22 8 3.1490 -3.8708 -0.9570 23 1 -0.4850 0.8400 0.0004 24 1 1.0023 -2.6114 -2.1375 25 1 -0.2765 -1.7043 -1.2949 26 1 -1.0428 -3.8717 -2.0053 27 1 0.1231 -4.6168 -1.0830 28 1 1.7104 -4.6573 1.8433 29 1 3.5934 -7.0354 2.0192 30 1 5.4320 -8.1525 0.8553 31 1 6.2832 -7.2586 -1.2708 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259519433.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:18 Heat of formation + Delta-G solvation = 12.424746 kcal Electronic energy + Delta-G solvation = -17453.360743 eV Core-core repulsion = 14533.550295 eV Total energy + Delta-G solvation = -2919.810448 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.02137 -37.91326 -36.27191 -35.34863 -32.36076 -32.15765 -30.15154 -29.88419 -27.45912 -24.10485 -22.82425 -22.34160 -20.99870 -19.88828 -17.16628 -16.95172 -16.22749 -15.55257 -15.43712 -14.87288 -14.55168 -14.26172 -13.76444 -13.53962 -12.86884 -12.78757 -12.41883 -12.02468 -11.99487 -11.41204 -11.29247 -11.16122 -10.87763 -10.83282 -10.71618 -10.42249 -9.87286 -9.69062 -9.30849 -8.62620 -8.33516 -7.80055 -7.60335 -6.18738 -4.28584 1.03654 1.48784 2.22357 2.91845 3.18787 3.23836 3.30618 3.35400 3.80184 4.31072 4.83219 4.90870 5.09055 5.12072 5.30165 5.42897 5.61254 5.79493 5.89050 6.08047 6.22711 6.38002 6.49956 6.62087 6.62867 6.77429 6.95939 7.25681 7.48792 7.71948 7.79392 7.99054 8.17690 8.25154 8.73890 9.37496 10.85876 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.006155 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.908744 B = 4548.301844 C = 4974.811046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.067 3.933 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.114 3.886 10 H 0.074 0.926 11 C 0.062 3.938 12 N -0.852 5.852 13 C 0.114 3.886 14 C -0.254 4.254 15 C -0.102 4.102 16 C -0.077 4.077 17 C -0.131 4.131 18 C -0.106 4.106 19 C -0.018 4.018 20 Cl -0.068 7.068 21 C 0.041 3.959 22 O -0.175 6.175 23 H 0.266 0.734 24 H 0.005 0.995 25 H 0.115 0.885 26 H 0.325 0.675 27 H 0.321 0.679 28 H 0.156 0.844 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.887 -12.101 -1.041 13.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.136 4.136 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.080 0.920 9 C 0.096 3.904 10 H 0.092 0.908 11 C -0.068 4.068 12 N -0.379 5.379 13 C 0.066 3.934 14 C -0.273 4.273 15 C -0.103 4.103 16 C -0.095 4.095 17 C -0.150 4.150 18 C -0.125 4.125 19 C -0.045 4.045 20 Cl -0.040 7.040 21 C -0.008 4.008 22 O -0.075 6.075 23 H 0.076 0.924 24 H 0.024 0.976 25 H 0.133 0.867 26 H 0.135 0.865 27 H 0.131 0.869 28 H 0.174 0.826 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.509 -11.402 -0.753 13.151 hybrid contribution 1.074 0.578 -0.903 1.517 sum 7.583 -10.824 -1.656 13.320 Atomic orbital electron populations 1.69854 1.05809 1.27184 1.49112 1.24947 0.94976 0.99321 0.94307 0.86453 0.79874 0.82616 0.78365 1.20411 1.20910 1.19694 1.20953 0.93260 0.89144 1.52677 0.91959 1.17951 0.88392 0.86926 0.97156 0.90802 1.22137 0.95734 0.92914 0.95970 1.58995 1.27133 1.05514 1.46306 1.23898 0.88386 0.96207 0.84934 1.22154 1.03470 0.97847 1.03831 1.20020 0.98200 0.97250 0.94836 1.20330 0.95718 0.93670 0.99765 1.20590 0.98088 1.00958 0.95325 1.20686 1.00762 0.94361 0.96647 1.19699 0.96903 0.97353 0.90585 1.98362 1.86830 1.87238 1.31526 1.19274 0.95816 0.89716 0.95981 1.84155 1.40242 1.37901 1.45188 0.92408 0.97634 0.86668 0.86452 0.86869 0.82640 0.85346 0.85040 0.84489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.93 11.29 55.43 0.63 -23.30 16 2 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -13.98 8.55 -34.44 -0.29 -14.27 16 8 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 9 C 0.11 2.78 2.37 -92.92 -0.22 2.56 16 10 H 0.07 1.91 8.08 -51.93 -0.42 1.49 16 11 C 0.06 1.45 6.07 -3.82 -0.02 1.42 16 12 N -0.85 -16.81 9.62 -10.37 -0.10 -16.91 16 13 C 0.11 2.50 4.71 -35.80 -0.17 2.33 16 14 C -0.25 -4.90 10.97 -37.62 -0.41 -5.31 16 15 C -0.10 -1.80 6.40 -105.16 -0.67 -2.48 16 16 C -0.08 -1.07 10.05 -39.67 -0.40 -1.46 16 17 C -0.13 -1.57 9.98 -39.94 -0.40 -1.97 16 18 C -0.11 -1.37 9.80 -39.50 -0.39 -1.76 16 19 C -0.02 -0.30 6.33 -39.39 -0.25 -0.55 16 20 Cl -0.07 -1.06 28.97 -51.86 -1.50 -2.56 16 21 C 0.04 0.78 7.21 -38.45 -0.28 0.51 16 22 O -0.17 -3.84 10.58 3.88 0.04 -3.80 16 23 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 24 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 25 H 0.12 2.97 5.95 -51.93 -0.31 2.66 16 26 H 0.32 5.61 9.08 -39.29 -0.36 5.25 16 27 H 0.32 6.04 8.07 -39.29 -0.32 5.72 16 28 H 0.16 2.71 8.06 -52.49 -0.42 2.28 16 29 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 30 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 286.64 15.07 4.32 4.32 Total: -1.00 -27.80 286.64 -8.29 -36.09 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -3.06 Total: 9.70 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -3.60 Total: -19.28 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.53 Total: -40.21 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: 0.04 Total: -3.80 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.80 -8.29 -36.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259519433.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.511 kcal (2) G-P(sol) polarization free energy of solvation -27.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds