Wall clock time and date at job start Mon Mar 30 2020 06:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99884 * 2 1 4 4 H 1.48496 * 109.47088 * 269.99804 * 3 2 1 5 5 H 1.48494 * 109.47328 * 30.00141 * 3 2 1 6 6 H 1.48507 * 109.46959 * 150.00196 * 3 2 1 7 7 C 1.37883 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99778 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99615 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.47065 * 299.99964 * 9 7 2 11 11 C 1.52998 * 109.46973 * 60.00158 * 9 7 2 12 12 N 1.46905 * 109.46978 * 184.99742 * 11 9 7 13 13 C 1.50702 * 109.46886 * 179.97438 * 9 7 2 14 14 C 1.34003 * 124.92512 * 119.72058 * 13 9 7 15 15 C 1.46774 * 106.18488 * 179.89971 * 14 13 9 16 16 C 1.39450 * 134.35566 * 180.09451 * 15 14 13 17 17 C 1.36732 * 119.73711 * 180.29169 * 16 15 14 18 18 C 1.38738 * 120.42796 * 0.02562 * 17 16 15 19 19 C 1.37951 * 120.67416 * 359.97438 * 18 17 16 20 20 Cl 1.73593 * 120.10234 * 180.02562 * 19 18 17 21 21 C 1.39048 * 119.79436 * 0.02562 * 19 18 17 22 22 O 1.34444 * 124.92577 * 300.02762 * 13 9 7 23 23 H 0.96996 * 120.00304 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47288 * 64.99642 * 11 9 7 25 25 H 1.08995 * 109.47151 * 304.99702 * 11 9 7 26 26 H 1.00901 * 110.99869 * 180.02562 * 12 11 9 27 27 H 1.00896 * 110.99543 * 303.95346 * 12 11 9 28 28 H 1.08001 * 126.90347 * 0.02562 * 14 13 9 29 29 H 1.07998 * 120.12698 * 0.31118 * 16 15 14 30 30 H 1.07995 * 119.78214 * 180.02562 * 17 16 15 31 31 H 1.08002 * 119.66534 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3709 -2.5799 -1.2495 12 7 -0.4524 -3.7951 -1.1906 13 6 2.2303 -3.6446 -0.0018 14 6 2.3155 -4.5821 0.9519 15 6 3.3945 -5.4879 0.5399 16 6 3.9634 -6.6382 1.0856 17 6 4.9911 -7.2614 0.4336 18 6 5.4712 -6.7563 -0.7660 19 6 4.9213 -5.6195 -1.3214 20 17 5.5331 -5.0008 -2.8235 21 6 3.8754 -4.9709 -0.6742 22 8 3.1490 -3.8708 -0.9570 23 1 -0.4850 0.8400 0.0004 24 1 1.0023 -2.6114 -2.1375 25 1 -0.2765 -1.7043 -1.2949 26 1 -1.0428 -3.8717 -2.0053 27 1 0.1231 -4.6168 -1.0830 28 1 1.7104 -4.6573 1.8433 29 1 3.5934 -7.0354 2.0192 30 1 5.4320 -8.1525 0.8553 31 1 6.2832 -7.2586 -1.2708 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259519433.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:18 Heat of formation + Delta-G solvation = -4.613914 kcal Electronic energy + Delta-G solvation = -17454.099595 eV Core-core repulsion = 14533.550295 eV Total energy + Delta-G solvation = -2920.549300 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.43542 -39.12397 -37.46266 -37.14757 -34.28966 -33.56970 -31.63255 -31.16217 -29.04536 -26.04239 -24.17485 -23.70861 -22.40897 -21.50698 -18.79382 -18.48009 -17.57418 -17.22365 -16.96378 -16.38961 -16.15317 -15.55558 -15.50677 -15.00042 -14.22268 -14.10877 -13.95239 -13.84617 -13.19588 -13.11431 -12.76107 -12.61091 -12.56811 -12.40341 -12.22762 -11.99394 -11.66824 -11.50742 -10.77245 -10.65028 -9.58259 -9.50073 -9.00380 -8.20986 -6.38380 -0.15961 0.30070 1.04223 1.37704 1.38771 1.44555 1.51917 1.80781 2.37616 2.64117 3.04589 3.53606 3.72035 3.94246 4.02415 4.25240 4.28415 4.43809 4.59046 4.69122 4.75080 4.83111 5.09127 5.21445 5.28405 5.38371 5.48138 5.54676 5.73503 5.77000 6.06014 6.26024 6.40886 6.60786 6.74510 7.30406 8.82236 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.006155 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.908744 B = 4548.301844 C = 4974.811046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.027 3.973 3 Si 0.957 3.043 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.045 0.955 9 C 0.119 3.881 10 H 0.050 0.950 11 C 0.078 3.922 12 N -0.845 5.845 13 C 0.074 3.926 14 C -0.239 4.239 15 C -0.123 4.123 16 C -0.071 4.071 17 C -0.114 4.114 18 C -0.085 4.085 19 C -0.043 4.043 20 Cl -0.072 7.072 21 C 0.011 3.989 22 O -0.204 6.204 23 H 0.269 0.731 24 H -0.009 1.009 25 H 0.089 0.911 26 H 0.340 0.660 27 H 0.329 0.671 28 H 0.168 0.832 29 H 0.160 0.840 30 H 0.182 0.818 31 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.553 -14.487 -0.312 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.174 4.174 3 Si 0.782 3.218 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.064 0.936 9 C 0.100 3.900 10 H 0.068 0.932 11 C -0.053 4.053 12 N -0.374 5.374 13 C 0.027 3.973 14 C -0.258 4.258 15 C -0.124 4.124 16 C -0.089 4.089 17 C -0.132 4.132 18 C -0.103 4.103 19 C -0.070 4.070 20 Cl -0.043 7.043 21 C -0.037 4.037 22 O -0.105 6.105 23 H 0.078 0.922 24 H 0.009 0.991 25 H 0.107 0.893 26 H 0.153 0.847 27 H 0.140 0.860 28 H 0.186 0.814 29 H 0.177 0.823 30 H 0.199 0.801 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 8.166 -13.807 -0.028 16.041 hybrid contribution 0.666 1.115 -1.112 1.710 sum 8.832 -12.692 -1.140 15.504 Atomic orbital electron populations 1.69952 1.06791 1.27963 1.49372 1.25634 0.95768 1.02113 0.93870 0.85572 0.78680 0.79149 0.78429 1.20033 1.19809 1.19801 1.21157 0.92707 0.91018 1.53177 0.93648 1.17586 0.88844 0.87344 0.96192 0.93247 1.21761 0.95075 0.93317 0.95128 1.58855 1.26694 1.04636 1.47182 1.23337 0.89958 0.97172 0.86857 1.22384 1.03294 0.97163 1.02942 1.20204 0.98451 0.98821 0.94952 1.20800 0.95467 0.91911 1.00728 1.21186 0.96432 1.01532 0.94064 1.21276 1.00193 0.92335 0.96533 1.20079 0.97209 0.98650 0.91100 1.98354 1.86693 1.87564 1.31729 1.19813 0.96870 0.89513 0.97464 1.84043 1.41017 1.39737 1.45731 0.92179 0.99121 0.89269 0.84733 0.85951 0.81422 0.82254 0.80061 0.80949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.47 11.29 21.45 0.24 -50.23 16 2 C 0.03 1.48 5.29 84.66 0.45 1.93 16 3 Si 0.96 43.51 29.54 68.60 2.03 45.53 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.54 -30.45 8.55 25.60 0.22 -30.23 16 8 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 9 C 0.12 6.09 2.37 -12.28 -0.03 6.07 16 10 H 0.05 2.71 8.08 -2.39 -0.02 2.69 16 11 C 0.08 3.80 6.07 86.30 0.52 4.33 16 12 N -0.84 -34.11 9.62 -186.71 -1.80 -35.91 16 13 C 0.07 3.39 4.71 24.72 0.12 3.51 16 14 C -0.24 -9.30 10.97 23.54 0.26 -9.04 16 15 C -0.12 -4.20 6.40 -20.21 -0.13 -4.33 16 16 C -0.07 -1.69 10.05 22.21 0.22 -1.47 16 17 C -0.11 -2.10 9.98 22.04 0.22 -1.88 16 18 C -0.09 -1.85 9.80 22.32 0.22 -1.63 16 19 C -0.04 -1.34 6.33 22.40 0.14 -1.20 16 20 Cl -0.07 -2.19 28.97 -2.72 -0.08 -2.27 16 21 C 0.01 0.43 7.21 23.00 0.17 0.60 16 22 O -0.20 -9.34 10.58 -9.03 -0.10 -9.43 16 23 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 24 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 25 H 0.09 4.82 5.95 -2.39 -0.01 4.80 16 26 H 0.34 11.86 9.08 -89.69 -0.81 11.05 16 27 H 0.33 12.62 8.07 -89.70 -0.72 11.90 16 28 H 0.17 5.83 8.06 -2.91 -0.02 5.81 16 29 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 30 H 0.18 1.65 8.06 -2.91 -0.02 1.62 16 31 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -63.72 286.64 2.32 -61.40 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: -0.36 Total: 24.25 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: 2.38 Total: -33.35 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -1.55 Total: -86.13 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.10 Total: -9.43 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.08 Total: -2.27 kcal Total: -63.72 2.32 -61.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259519433.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.786 kcal (2) G-P(sol) polarization free energy of solvation -63.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds