Wall clock time and date at job start Mon Mar 30 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35904 * 116.99954 * 2 1 4 4 C 1.41399 * 119.89592 * 270.22977 * 3 2 1 5 5 N 1.34694 * 129.63841 * 359.96353 * 4 3 2 6 6 C 1.27885 * 117.83451 * 180.30724 * 5 4 3 7 7 S 1.70647 * 111.50377 * 0.02562 * 6 5 4 8 8 C 1.39771 * 118.50903 * 180.28806 * 4 3 2 9 9 C 1.39446 * 120.38508 * 359.73010 * 8 4 3 10 10 C 1.37601 * 120.21054 * 0.02562 * 9 8 4 11 11 C 1.37660 * 119.89193 * 89.99634 * 3 2 1 12 12 C 1.50699 * 119.72522 * 0.02562 * 11 3 2 13 13 H 1.09000 * 109.46916 * 324.72560 * 12 11 3 14 14 O 1.42895 * 109.47485 * 204.72109 * 12 11 3 15 15 C 1.50706 * 109.46824 * 84.71894 * 12 11 3 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 12 11 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99350 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 12 20 20 H 1.48493 * 109.47326 * 270.00340 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00090 * 19 17 15 22 22 H 1.48498 * 109.47210 * 149.99801 * 19 17 15 23 23 H 1.09011 * 109.46720 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47515 * 299.99833 * 1 2 3 25 25 H 1.08999 * 109.47336 * 60.00254 * 1 2 3 26 26 H 1.07998 * 124.24880 * 180.02562 * 6 5 4 27 27 H 1.08002 * 119.89312 * 179.97438 * 9 8 4 28 28 H 1.07996 * 119.94309 * 180.02562 * 10 9 8 29 29 H 0.96698 * 114.00355 * 300.00283 * 14 12 11 30 30 H 0.97005 * 119.99661 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 2.3615 1.8411 -1.2258 5 7 2.1438 1.4235 -2.4877 6 6 2.5319 2.1805 -3.4426 7 16 3.2669 3.6035 -2.8535 8 6 3.0015 3.0832 -1.1920 9 6 3.3131 3.6832 0.0276 10 6 2.9929 3.0558 1.2097 11 6 2.3574 1.8222 1.1935 12 6 2.0118 1.1429 2.4935 13 1 1.0712 0.6033 2.3826 14 8 1.8794 2.1244 3.5235 15 6 3.1063 0.1741 2.8604 16 1 3.9663 0.0619 2.2168 17 6 3.0096 -0.5690 4.0178 18 7 3.9650 -1.4141 4.3383 19 14 1.5218 -0.3755 5.1306 20 1 1.7871 0.6891 6.1312 21 1 0.3383 -0.0039 4.3143 22 1 1.2572 -1.6581 5.8308 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 2.4097 1.9485 -4.4903 27 1 3.8080 4.6430 0.0444 28 1 3.2358 3.5246 2.1518 29 1 2.6804 2.6439 3.6771 30 1 3.8973 -1.9366 5.1527 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259522652.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:13 Heat of formation + Delta-G solvation = -21.162330 kcal Electronic energy + Delta-G solvation = -17844.438744 eV Core-core repulsion = 14925.215557 eV Total energy + Delta-G solvation = -2919.223187 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.45472 -38.06632 -36.88425 -35.27851 -32.34664 -30.58236 -29.52031 -27.39555 -26.41457 -24.78137 -23.00175 -21.96021 -20.19938 -18.58484 -17.50622 -16.84252 -16.35921 -15.66681 -15.37312 -15.03434 -14.68832 -14.38514 -14.10954 -13.53288 -13.41046 -12.99996 -12.70613 -12.07532 -11.87859 -11.72065 -11.48770 -11.13297 -10.93869 -10.76526 -10.06530 -9.66906 -9.63800 -9.53694 -9.32381 -8.87303 -8.70203 -8.33772 -7.61057 -6.16868 -4.29096 0.57709 1.34944 1.38923 1.80951 2.56841 3.39837 3.43497 3.54166 3.70856 4.09208 4.24780 4.43700 4.94312 5.04788 5.18506 5.31210 5.44616 5.60254 5.65704 5.70690 5.80752 5.82362 5.97852 6.23895 6.47140 6.51476 6.80389 7.18228 7.41665 7.60801 7.98921 8.21084 8.68328 8.89597 9.42968 10.93283 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.030933 B = 0.006416 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.976819 B = 4362.948721 C = 4699.883901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.310 6.310 3 C 0.154 3.846 4 C 0.054 3.946 5 N -0.447 5.447 6 C 0.054 3.946 7 S 0.067 5.933 8 C -0.173 4.173 9 C -0.086 4.086 10 C -0.074 4.074 11 C -0.074 4.074 12 C 0.229 3.771 13 H 0.078 0.922 14 O -0.581 6.581 15 C -0.546 4.546 16 H 0.077 0.923 17 C 0.085 3.915 18 N -0.886 5.886 19 Si 0.911 3.089 20 H -0.277 1.277 21 H -0.269 1.269 22 H -0.302 1.302 23 H 0.093 0.907 24 H 0.046 0.954 25 H 0.040 0.960 26 H 0.200 0.800 27 H 0.130 0.870 28 H 0.141 0.859 29 H 0.362 0.638 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.992 10.533 -11.684 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.226 6.226 3 C 0.107 3.893 4 C -0.065 4.065 5 N -0.159 5.159 6 C -0.252 4.252 7 S 0.318 5.682 8 C -0.291 4.291 9 C -0.109 4.109 10 C -0.095 4.095 11 C -0.077 4.077 12 C 0.172 3.828 13 H 0.096 0.904 14 O -0.388 6.388 15 C -0.583 4.583 16 H 0.095 0.905 17 C -0.120 4.120 18 N -0.523 5.523 19 Si 0.740 3.260 20 H -0.203 1.203 21 H -0.194 1.194 22 H -0.230 1.230 23 H 0.112 0.888 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.216 0.784 27 H 0.148 0.852 28 H 0.158 0.842 29 H 0.210 0.790 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.300 10.273 -12.234 16.544 hybrid contribution -0.347 -0.200 1.043 1.118 sum -4.647 10.073 -11.191 15.757 Atomic orbital electron populations 1.22938 0.79437 1.03151 1.00027 1.86121 1.19166 1.23463 1.93823 1.17849 0.97406 0.85963 0.88115 1.19473 1.03272 0.92726 0.91025 1.66150 1.19307 1.31953 0.98512 1.27969 1.00324 0.93879 1.02988 1.83704 1.62315 1.24884 0.97252 1.23534 1.08279 0.99428 0.97896 1.20238 1.01288 1.00114 0.89278 1.20884 0.96503 0.94330 0.97795 1.21162 0.96092 0.93656 0.96821 1.18942 0.98654 0.85838 0.79361 0.90437 1.86462 1.41007 1.53035 1.58345 1.21254 1.06091 1.22413 1.08562 0.90538 1.24985 0.96343 0.93339 0.97347 1.69941 1.33132 1.24357 1.24869 0.86297 0.83185 0.75925 0.80574 1.20268 1.19377 1.23044 0.88832 0.93552 0.94094 0.78378 0.85231 0.84185 0.78970 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.77 101.05 1.09 1.74 16 2 O -0.31 -6.68 9.66 -19.44 -0.19 -6.87 16 3 C 0.15 3.23 5.74 -38.59 -0.22 3.01 16 4 C 0.05 1.03 6.94 -84.83 -0.59 0.44 16 5 N -0.45 -7.78 10.57 -12.90 -0.14 -7.92 16 6 C 0.05 0.70 12.10 51.12 0.62 1.32 16 7 S 0.07 0.83 23.17 -107.50 -2.49 -1.66 16 8 C -0.17 -2.83 6.55 -38.56 -0.25 -3.09 16 9 C -0.09 -1.31 10.06 -39.36 -0.40 -1.71 16 10 C -0.07 -1.26 9.29 -39.61 -0.37 -1.63 16 11 C -0.07 -1.53 5.00 -104.63 -0.52 -2.05 16 12 C 0.23 5.35 2.23 -29.03 -0.06 5.29 16 13 H 0.08 1.89 5.37 -51.93 -0.28 1.61 16 14 O -0.58 -12.56 10.68 -35.23 -0.38 -12.93 16 15 C -0.55 -15.13 9.33 -34.44 -0.32 -15.45 16 16 H 0.08 2.35 7.98 -52.49 -0.42 1.93 16 17 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 18 N -0.89 -26.76 13.96 55.43 0.77 -25.98 16 19 Si 0.91 22.66 26.18 -169.99 -4.45 18.21 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 22 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 23 H 0.09 1.36 8.14 -51.92 -0.42 0.94 16 24 H 0.05 0.77 7.13 -51.93 -0.37 0.40 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.20 1.68 8.06 -52.49 -0.42 1.25 16 27 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.14 2.02 6.38 -52.49 -0.33 1.69 16 29 H 0.36 6.62 7.29 45.56 0.33 6.95 16 30 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 273.32 15.07 4.12 4.12 Total: -1.00 -33.43 273.32 -5.80 -39.23 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -1.93 Total: 3.61 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -1.13 Total: -9.81 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.64 Total: -33.90 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.56 Total: -19.80 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.45 Total: 18.21 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.49 Total: -1.66 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.43 -5.80 -39.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259522652.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.071 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds