Wall clock time and date at job start Mon Mar 30 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35904 * 116.99954 * 2 1 4 4 C 1.41399 * 119.89592 * 270.22977 * 3 2 1 5 5 N 1.34694 * 129.63841 * 359.96353 * 4 3 2 6 6 C 1.27885 * 117.83451 * 180.30724 * 5 4 3 7 7 S 1.70647 * 111.50377 * 0.02562 * 6 5 4 8 8 C 1.39771 * 118.50903 * 180.28806 * 4 3 2 9 9 C 1.39446 * 120.38508 * 359.73010 * 8 4 3 10 10 C 1.37601 * 120.21054 * 0.02562 * 9 8 4 11 11 C 1.37660 * 119.89193 * 89.99634 * 3 2 1 12 12 C 1.50699 * 119.72522 * 0.02562 * 11 3 2 13 13 H 1.09000 * 109.46916 * 324.72560 * 12 11 3 14 14 O 1.42895 * 109.47485 * 204.72109 * 12 11 3 15 15 C 1.50706 * 109.46824 * 84.71894 * 12 11 3 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 12 11 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99350 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 12 20 20 H 1.48493 * 109.47326 * 270.00340 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00090 * 19 17 15 22 22 H 1.48498 * 109.47210 * 149.99801 * 19 17 15 23 23 H 1.09011 * 109.46720 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47515 * 299.99833 * 1 2 3 25 25 H 1.08999 * 109.47336 * 60.00254 * 1 2 3 26 26 H 1.07998 * 124.24880 * 180.02562 * 6 5 4 27 27 H 1.08002 * 119.89312 * 179.97438 * 9 8 4 28 28 H 1.07996 * 119.94309 * 180.02562 * 10 9 8 29 29 H 0.96698 * 114.00355 * 300.00283 * 14 12 11 30 30 H 0.97005 * 119.99661 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 2.3615 1.8411 -1.2258 5 7 2.1438 1.4235 -2.4877 6 6 2.5319 2.1805 -3.4426 7 16 3.2669 3.6035 -2.8535 8 6 3.0015 3.0832 -1.1920 9 6 3.3131 3.6832 0.0276 10 6 2.9929 3.0558 1.2097 11 6 2.3574 1.8222 1.1935 12 6 2.0118 1.1429 2.4935 13 1 1.0712 0.6033 2.3826 14 8 1.8794 2.1244 3.5235 15 6 3.1063 0.1741 2.8604 16 1 3.9663 0.0619 2.2168 17 6 3.0096 -0.5690 4.0178 18 7 3.9650 -1.4141 4.3383 19 14 1.5218 -0.3755 5.1306 20 1 1.7871 0.6891 6.1312 21 1 0.3383 -0.0039 4.3143 22 1 1.2572 -1.6581 5.8308 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 2.4097 1.9485 -4.4903 27 1 3.8080 4.6430 0.0444 28 1 3.2358 3.5246 2.1518 29 1 2.6804 2.6439 3.6771 30 1 3.8973 -1.9366 5.1527 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259522652.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:12 Heat of formation + Delta-G solvation = -47.320314 kcal Electronic energy + Delta-G solvation = -17845.573039 eV Core-core repulsion = 14925.215557 eV Total energy + Delta-G solvation = -2920.357482 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.76249 -39.44701 -38.43977 -36.75271 -34.49465 -32.06199 -30.79407 -29.16821 -27.82194 -26.08069 -24.63807 -23.31249 -21.68084 -19.88977 -19.48000 -18.15931 -17.74977 -17.20000 -16.84106 -16.74584 -16.16732 -15.62106 -15.37262 -15.07634 -15.05299 -14.67118 -14.29306 -13.66548 -13.36691 -13.22757 -12.88537 -12.86669 -12.47638 -12.34315 -11.84580 -11.44107 -11.13057 -10.88350 -10.85404 -10.63324 -10.56401 -9.67238 -8.85907 -8.36931 -6.52364 -0.60882 0.00702 0.29343 0.69539 1.37556 1.39996 1.42693 1.56380 2.35720 2.39169 2.84243 2.90836 3.04752 3.74826 3.84501 3.97793 4.16899 4.21169 4.32241 4.34862 4.46481 4.57543 4.67162 4.92137 5.04184 5.14497 5.36337 5.51960 5.56384 6.05522 6.37203 6.58003 6.69291 7.04952 7.25058 8.77633 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.030933 B = 0.006416 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.976819 B = 4362.948721 C = 4699.883901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.345 6.345 3 C 0.122 3.878 4 C 0.037 3.963 5 N -0.496 5.496 6 C 0.064 3.936 7 S 0.153 5.847 8 C -0.199 4.199 9 C -0.072 4.072 10 C -0.086 4.086 11 C -0.102 4.102 12 C 0.243 3.757 13 H 0.063 0.937 14 O -0.579 6.579 15 C -0.544 4.544 16 H 0.030 0.970 17 C 0.033 3.967 18 N -0.935 5.935 19 Si 0.973 3.027 20 H -0.265 1.265 21 H -0.263 1.263 22 H -0.300 1.300 23 H 0.110 0.890 24 H 0.042 0.958 25 H 0.052 0.948 26 H 0.244 0.756 27 H 0.171 0.829 28 H 0.162 0.838 29 H 0.378 0.622 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 13.163 -13.254 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.261 6.261 3 C 0.075 3.925 4 C -0.083 4.083 5 N -0.209 5.209 6 C -0.240 4.240 7 S 0.406 5.594 8 C -0.317 4.317 9 C -0.094 4.094 10 C -0.107 4.107 11 C -0.105 4.105 12 C 0.186 3.814 13 H 0.081 0.919 14 O -0.388 6.388 15 C -0.581 4.581 16 H 0.048 0.952 17 C -0.168 4.168 18 N -0.574 5.574 19 Si 0.800 3.200 20 H -0.190 1.190 21 H -0.187 1.187 22 H -0.228 1.228 23 H 0.129 0.871 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.260 0.740 27 H 0.189 0.811 28 H 0.180 0.820 29 H 0.228 0.772 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.741 12.940 -13.821 19.518 hybrid contribution -0.116 -0.912 1.262 1.561 sum -4.857 12.028 -12.560 18.056 Atomic orbital electron populations 1.23086 0.77834 1.04403 1.00349 1.86041 1.21154 1.24827 1.94125 1.18142 0.98758 0.86182 0.89408 1.19545 1.03780 0.93705 0.91240 1.66186 1.22187 1.33974 0.98553 1.28838 0.97489 0.93466 1.04210 1.83424 1.60217 1.22756 0.92984 1.24080 1.07652 0.99056 1.00956 1.20653 0.99565 1.01004 0.88167 1.21140 0.96463 0.93281 0.99811 1.20988 0.98694 0.95484 0.95379 1.18449 0.96186 0.85539 0.81255 0.91928 1.86370 1.41923 1.52583 1.57890 1.21434 1.05912 1.23312 1.07487 0.95166 1.25812 0.98968 0.93046 0.98948 1.70066 1.35362 1.26035 1.25906 0.85311 0.79829 0.76135 0.78758 1.19039 1.18749 1.22830 0.87149 0.93889 0.92977 0.74044 0.81125 0.82046 0.77186 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.29 10.77 113.37 1.22 2.51 16 2 O -0.34 -15.55 9.66 -92.47 -0.89 -16.44 16 3 C 0.12 5.26 5.74 22.91 0.13 5.39 16 4 C 0.04 1.37 6.94 39.85 0.28 1.65 16 5 N -0.50 -16.63 10.57 -194.54 -2.06 -18.68 16 6 C 0.06 1.44 12.10 130.82 1.58 3.03 16 7 S 0.15 3.14 23.17 -56.49 -1.31 1.83 16 8 C -0.20 -6.05 6.55 22.93 0.15 -5.90 16 9 C -0.07 -2.00 10.06 22.41 0.23 -1.77 16 10 C -0.09 -2.84 9.29 22.25 0.21 -2.64 16 11 C -0.10 -4.30 5.00 -19.87 -0.10 -4.40 16 12 C 0.24 11.61 2.23 29.10 0.06 11.67 16 13 H 0.06 3.15 5.37 -2.39 -0.01 3.14 16 14 O -0.58 -24.59 10.68 -148.98 -1.59 -26.18 16 15 C -0.54 -31.38 9.33 25.60 0.24 -31.14 16 16 H 0.03 1.97 7.98 -2.91 -0.02 1.95 16 17 C 0.03 1.90 5.47 84.66 0.46 2.36 16 18 N -0.93 -58.45 13.96 21.45 0.30 -58.15 16 19 Si 0.97 47.30 26.18 68.60 1.80 49.10 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.26 -12.42 6.54 99.48 0.65 -11.77 16 22 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 23 H 0.11 3.30 8.14 -2.38 -0.02 3.28 16 24 H 0.04 1.48 7.13 -2.39 -0.02 1.46 16 25 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.24 2.94 8.06 -2.91 -0.02 2.91 16 27 H 0.17 3.25 8.06 -2.91 -0.02 3.22 16 28 H 0.16 4.39 6.38 -2.91 -0.02 4.38 16 29 H 0.38 13.40 7.29 -74.06 -0.54 12.86 16 30 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -76.38 273.32 1.30 -75.07 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.60 Total: 12.69 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: 4.46 Total: -19.24 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -1.76 Total: -76.83 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -2.48 Total: -42.63 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.80 Total: 49.10 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.31 Total: 1.83 kcal Total: -76.38 1.30 -75.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259522652.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.751 kcal (2) G-P(sol) polarization free energy of solvation -76.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds