Wall clock time and date at job start Mon Mar 30 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35900 * 117.00095 * 2 1 4 4 C 1.41400 * 119.89275 * 269.97650 * 3 2 1 5 5 N 1.34695 * 129.64872 * 359.97438 * 4 3 2 6 6 C 1.27880 * 117.83857 * 180.02562 * 5 4 3 7 7 S 1.70640 * 111.50735 * 359.97438 * 6 5 4 8 8 C 1.39769 * 118.50636 * 180.02562 * 4 3 2 9 9 C 1.39445 * 120.38829 * 0.02562 * 8 4 3 10 10 C 1.37606 * 120.20507 * 359.72110 * 9 8 4 11 11 C 1.37662 * 119.89751 * 89.99763 * 3 2 1 12 12 C 1.50697 * 119.71376 * 359.95452 * 11 3 2 13 13 H 1.08997 * 109.47395 * 35.00576 * 12 11 3 14 14 O 1.42903 * 109.47214 * 155.00120 * 12 11 3 15 15 C 1.50700 * 109.47266 * 274.99990 * 12 11 3 16 16 H 1.07999 * 119.99988 * 0.02562 * 15 12 11 17 17 C 1.37885 * 120.00047 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 12 19 19 Si 1.86805 * 119.99854 * 359.72512 * 17 15 12 20 20 H 1.48498 * 109.46909 * 90.00086 * 19 17 15 21 21 H 1.48497 * 109.46701 * 209.99996 * 19 17 15 22 22 H 1.48500 * 109.46867 * 330.00101 * 19 17 15 23 23 H 1.09002 * 109.47194 * 60.00725 * 1 2 3 24 24 H 1.08999 * 109.46985 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47359 * 300.00284 * 1 2 3 26 26 H 1.07999 * 124.24467 * 180.02562 * 6 5 4 27 27 H 1.08001 * 119.89431 * 179.97438 * 9 8 4 28 28 H 1.08008 * 119.93755 * 180.26126 * 10 9 8 29 29 H 0.96705 * 114.00076 * 59.99301 * 14 12 11 30 30 H 0.97001 * 119.99646 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 2.3664 1.8385 -1.2259 5 7 2.1535 1.4186 -2.4879 6 6 2.5405 2.1763 -3.4426 7 16 3.2665 3.6037 -2.8535 8 6 3.0012 3.0833 -1.1921 9 6 3.3087 3.6854 0.0275 10 6 2.9838 3.0603 1.2096 11 6 2.3575 1.8223 1.1934 12 6 2.0104 1.1435 2.4934 13 1 2.1219 0.0651 2.3813 14 8 2.8864 1.6084 3.5222 15 6 0.5855 1.4656 2.8634 16 1 -0.0094 2.0981 2.2213 17 6 0.0413 0.9527 4.0219 18 7 -1.2024 1.2333 4.3446 19 14 1.0679 -0.1477 5.1286 20 1 1.7836 0.6852 6.1282 21 1 0.1807 -1.1099 5.8302 22 1 2.0553 -0.8929 4.3072 23 1 -0.3634 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 2.4218 1.9424 -4.4903 27 1 3.7997 4.6472 0.0444 28 1 3.2201 3.5326 2.1518 29 1 2.8404 2.5619 3.6769 30 1 -1.5851 0.8728 5.1597 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259522655.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:14 Heat of formation + Delta-G solvation = -23.419462 kcal Electronic energy + Delta-G solvation = -17914.556374 eV Core-core repulsion = 14995.235311 eV Total energy + Delta-G solvation = -2919.321063 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.41482 -38.00651 -36.79395 -35.26550 -32.43274 -30.54428 -29.47894 -27.48316 -26.09217 -24.72474 -23.06444 -21.86733 -20.18796 -18.55413 -17.51942 -16.77115 -16.31563 -15.63830 -15.27411 -14.99509 -14.72908 -14.30330 -14.04049 -13.50814 -13.24025 -13.03707 -12.68229 -11.91503 -11.89495 -11.66023 -11.44317 -11.05528 -10.97193 -10.72341 -10.03674 -9.66396 -9.52925 -9.43677 -9.33889 -8.87744 -8.75303 -8.32396 -7.58131 -6.26387 -4.39776 0.60199 1.37627 1.40271 1.82786 2.59199 3.38761 3.42248 3.55402 3.72923 4.12166 4.39796 4.41287 4.96297 5.01847 5.19501 5.32840 5.47294 5.71893 5.83731 5.84223 5.95286 6.11135 6.26318 6.48610 6.54851 6.60883 6.83854 7.23100 7.35727 7.65261 8.06539 8.12128 8.63217 8.79521 9.34464 10.82415 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.032415 B = 0.006516 C = 0.005921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.592037 B = 4296.313248 C = 4728.165367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.326 6.326 3 C 0.157 3.843 4 C 0.053 3.947 5 N -0.447 5.447 6 C 0.053 3.947 7 S 0.065 5.935 8 C -0.173 4.173 9 C -0.088 4.088 10 C -0.073 4.073 11 C -0.075 4.075 12 C 0.226 3.774 13 H 0.085 0.915 14 O -0.579 6.579 15 C -0.555 4.555 16 H 0.076 0.924 17 C 0.088 3.912 18 N -0.885 5.885 19 Si 0.909 3.091 20 H -0.277 1.277 21 H -0.303 1.303 22 H -0.265 1.265 23 H 0.032 0.968 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.199 0.801 27 H 0.129 0.871 28 H 0.140 0.860 29 H 0.361 0.639 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.360 4.586 -11.357 14.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.242 6.242 3 C 0.110 3.890 4 C -0.066 4.066 5 N -0.158 5.158 6 C -0.252 4.252 7 S 0.316 5.684 8 C -0.291 4.291 9 C -0.111 4.111 10 C -0.094 4.094 11 C -0.079 4.079 12 C 0.169 3.831 13 H 0.102 0.898 14 O -0.386 6.386 15 C -0.592 4.592 16 H 0.094 0.906 17 C -0.118 4.118 18 N -0.521 5.521 19 Si 0.739 3.261 20 H -0.202 1.202 21 H -0.231 1.231 22 H -0.190 1.190 23 H 0.051 0.949 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.216 0.784 27 H 0.147 0.853 28 H 0.157 0.843 29 H 0.209 0.791 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.588 4.041 -11.909 14.688 hybrid contribution -0.245 -0.213 1.016 1.067 sum 7.343 3.829 -10.893 13.683 Atomic orbital electron populations 1.23214 0.77730 1.03065 1.02217 1.85859 1.20768 1.23601 1.94014 1.17861 0.96860 0.86286 0.88042 1.19487 1.03328 0.92742 0.91040 1.66144 1.18780 1.32378 0.98547 1.27960 1.00485 0.93811 1.02979 1.83697 1.62594 1.24763 0.97334 1.23533 1.08336 0.99346 0.97847 1.20227 1.01610 0.99983 0.89299 1.20875 0.96732 0.94104 0.97739 1.21150 0.95561 0.94327 0.96853 1.18993 0.89682 0.95017 0.79398 0.89753 1.86481 1.66315 1.27475 1.58294 1.21276 0.95203 1.33835 1.08887 0.90571 1.24977 0.94572 0.94986 0.97265 1.69932 1.13486 1.43815 1.24839 0.86299 0.79210 0.80074 0.80566 1.20231 1.23070 1.18991 0.94920 0.89620 0.89525 0.78419 0.85305 0.84258 0.79124 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.12 101.05 1.12 1.74 16 2 O -0.33 -7.05 9.48 -19.43 -0.18 -7.23 16 3 C 0.16 3.29 5.74 -38.59 -0.22 3.07 16 4 C 0.05 1.01 6.94 -84.84 -0.59 0.42 16 5 N -0.45 -7.86 10.57 -12.90 -0.14 -7.99 16 6 C 0.05 0.70 12.10 51.12 0.62 1.32 16 7 S 0.06 0.81 23.17 -107.50 -2.49 -1.68 16 8 C -0.17 -2.84 6.55 -38.56 -0.25 -3.10 16 9 C -0.09 -1.35 10.06 -39.36 -0.40 -1.75 16 10 C -0.07 -1.25 9.28 -39.62 -0.37 -1.62 16 11 C -0.08 -1.55 5.00 -104.64 -0.52 -2.07 16 12 C 0.23 5.21 2.24 -29.04 -0.06 5.15 16 13 H 0.09 2.10 6.69 -51.93 -0.35 1.76 16 14 O -0.58 -12.52 10.70 -35.23 -0.38 -12.89 16 15 C -0.56 -14.40 7.42 -34.44 -0.26 -14.66 16 16 H 0.08 2.15 7.54 -52.49 -0.40 1.75 16 17 C 0.09 2.39 5.47 -17.82 -0.10 2.29 16 18 N -0.88 -25.38 13.96 55.43 0.77 -24.61 16 19 Si 0.91 22.25 26.18 -169.99 -4.45 17.80 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.30 -7.39 7.11 56.52 0.40 -6.98 16 22 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 25 H 0.09 1.92 5.54 -51.93 -0.29 1.63 16 26 H 0.20 1.71 8.06 -52.49 -0.42 1.29 16 27 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.14 2.01 6.38 -52.48 -0.34 1.68 16 29 H 0.36 6.56 7.29 45.56 0.33 6.89 16 30 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 270.90 15.07 4.08 4.08 Total: -1.00 -31.25 270.90 -5.70 -36.95 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -1.89 Total: 4.79 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -1.03 Total: -9.21 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.64 Total: -32.60 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.56 Total: -20.13 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.45 Total: 17.80 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.49 Total: -1.68 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.25 -5.70 -36.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259522655.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.527 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds