Wall clock time and date at job start Mon Mar 30 2020 06:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.75743 * 125.11919 * 2 1 4 4 C 1.76442 * 90.63871 * 179.97438 * 3 2 1 5 5 C 1.37201 * 140.83310 * 179.97438 * 4 3 2 6 6 C 1.41080 * 107.72759 * 179.73913 * 5 4 3 7 7 C 1.40643 * 126.73367 * 180.30422 * 6 5 4 8 8 H 1.08007 * 119.99429 * 180.13603 * 7 6 5 9 9 C 1.40196 * 120.00304 * 0.12942 * 7 6 5 10 10 N 1.30697 * 119.99930 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00265 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46873 * 60.00034 * 11 9 7 13 13 H 1.48495 * 109.47262 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46939 * 300.00498 * 11 9 7 15 15 C 1.41253 * 106.52671 * 0.41540 * 6 5 4 16 16 C 1.40459 * 126.27106 * 179.85269 * 15 6 5 17 17 O 1.21863 * 119.99527 * 274.39368 * 16 15 6 18 18 O 1.35146 * 120.00447 * 94.12265 * 16 15 6 19 19 N 1.35518 * 109.27309 * 0.02562 * 4 3 2 20 20 C 1.31412 * 125.11891 * 180.02562 * 2 1 3 21 21 C 1.50700 * 121.76157 * 0.02562 * 20 2 1 22 22 H 1.08998 * 109.47393 * 359.97046 * 1 2 3 23 23 H 1.08999 * 109.47084 * 119.97483 * 1 2 3 24 24 H 1.09003 * 109.47021 * 239.97599 * 1 2 3 25 25 H 1.08003 * 126.13517 * 359.97438 * 5 4 3 26 26 H 0.97005 * 120.00066 * 179.97438 * 10 9 7 27 27 H 0.96700 * 114.00588 * 180.02562 * 18 16 15 28 28 H 1.09006 * 109.47147 * 264.81454 * 21 20 2 29 29 H 1.08993 * 109.47067 * 24.81845 * 21 20 2 30 30 H 1.09005 * 109.46976 * 144.82122 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5180 1.4375 0.0000 4 6 3.9725 0.4386 0.0008 5 6 5.3399 0.5507 0.0009 6 6 5.8778 -0.7535 0.0079 7 6 7.2405 -1.1013 0.0163 8 1 7.5324 -2.1412 0.0189 9 6 8.2201 -0.0983 0.0212 10 7 7.8669 1.1600 0.0184 11 14 10.0300 -0.5603 0.0317 12 1 10.3432 -1.3618 -1.1786 13 1 10.8559 0.6738 0.0362 14 1 10.3296 -1.3604 1.2464 15 6 4.7792 -1.6413 0.0021 16 6 4.8447 -3.0444 0.0030 17 8 4.9597 -3.6496 -1.0484 18 8 4.7856 -3.7229 1.1703 19 7 3.6170 -0.8691 0.0004 20 6 2.2630 -1.0749 -0.0005 21 6 1.6713 -2.4609 -0.0017 22 1 -0.3634 1.0276 0.0005 23 1 -0.3633 -0.5134 -0.8902 24 1 -0.3633 -0.5142 0.8898 25 1 5.9034 1.4721 0.0000 26 1 8.5446 1.8540 0.0221 27 1 4.8386 -4.6833 1.0702 28 1 1.6136 -2.8322 1.0216 29 1 0.6710 -2.4285 -0.4333 30 1 2.3014 -3.1244 -0.5940 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259525534.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:32 Heat of formation + Delta-G solvation = -28.502326 kcal Electronic energy + Delta-G solvation = -17776.636629 eV Core-core repulsion = 14857.095156 eV Total energy + Delta-G solvation = -2919.541473 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.79547 -38.90748 -36.00354 -35.13277 -33.71067 -30.71370 -29.57731 -28.07910 -26.93043 -24.45747 -22.64961 -20.70359 -19.64746 -18.35692 -17.54378 -17.09756 -16.47608 -15.37221 -15.15278 -14.87255 -14.42885 -13.72036 -13.37411 -13.20105 -12.91608 -12.57606 -12.51231 -12.26991 -12.05425 -11.62250 -11.41807 -11.39898 -11.21080 -10.73545 -10.48861 -10.34913 -10.09924 -10.00530 -9.75752 -9.29775 -8.77184 -7.51641 -6.84560 -6.21208 -4.51136 1.80668 2.15929 2.54795 2.85655 2.93110 3.01694 3.05291 3.23668 3.79930 3.90269 3.99134 4.46015 5.13728 5.26077 5.34464 5.63943 5.64935 5.68037 5.78304 5.98793 6.06735 6.28194 6.58051 6.79871 6.84883 7.08701 7.11399 7.45699 7.75387 7.85249 8.34400 8.44010 8.69114 8.71481 8.72607 10.05081 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.022718 B = 0.007648 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.229078 B = 3660.056357 C = 4737.546221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.261 4.261 3 S 0.050 5.950 4 C -0.018 4.018 5 C -0.161 4.161 6 C 0.147 3.853 7 C -0.422 4.422 8 H 0.078 0.922 9 C 0.076 3.924 10 N -0.790 5.790 11 Si 0.924 3.076 12 H -0.262 1.262 13 H -0.275 1.275 14 H -0.263 1.263 15 C -0.241 4.241 16 C 0.600 3.400 17 O -0.526 6.526 18 O -0.512 6.512 19 N -0.367 5.367 20 C 0.107 3.893 21 C -0.095 4.095 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.174 0.826 26 H 0.285 0.715 27 H 0.386 0.614 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.818 -1.674 1.817 8.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.382 4.382 3 S 0.308 5.692 4 C -0.237 4.237 5 C -0.198 4.198 6 C 0.139 3.861 7 C -0.452 4.452 8 H 0.096 0.904 9 C -0.144 4.144 10 N -0.416 5.416 11 Si 0.748 3.252 12 H -0.187 1.187 13 H -0.200 1.200 14 H -0.187 1.187 15 C -0.344 4.344 16 C 0.445 3.555 17 O -0.414 6.414 18 O -0.321 6.321 19 N -0.043 5.043 20 C -0.007 4.007 21 C -0.155 4.155 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.191 0.809 26 H 0.096 0.904 27 H 0.240 0.760 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.194 0.068 1.579 8.345 hybrid contribution 1.128 -2.162 0.008 2.439 sum -7.066 -2.094 1.586 7.539 Atomic orbital electron populations 1.19974 0.87338 1.02124 1.01722 1.22745 0.99506 0.93971 1.21931 1.83899 0.92946 1.06646 1.85659 1.23665 0.98604 0.85646 1.15741 1.21580 0.86790 1.00157 1.11249 1.17060 0.90493 0.89044 0.89546 1.18941 0.89071 0.94363 1.42841 0.90383 1.25996 1.02365 0.94223 0.91778 1.69512 1.36466 1.00753 1.34845 0.86088 0.79941 0.78975 0.80185 1.18668 1.19975 1.18700 1.17359 0.84098 0.87359 1.45542 1.18085 0.69872 0.87159 0.80361 1.90873 1.45843 1.71429 1.33294 1.85428 1.85686 1.24165 1.36777 1.41195 1.01800 1.05904 1.55373 1.18796 0.82015 0.97153 1.02713 1.20602 1.00864 0.91085 1.02911 0.91760 0.91618 0.91626 0.80863 0.90371 0.75956 0.90522 0.89995 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.67 9.27 36.01 0.33 -0.33 16 2 C -0.26 -4.67 6.43 -36.13 -0.23 -4.91 16 3 S 0.05 0.98 23.36 -107.50 -2.51 -1.53 16 4 C -0.02 -0.43 7.72 -16.30 -0.13 -0.56 16 5 C -0.16 -4.24 9.74 -38.88 -0.38 -4.62 16 6 C 0.15 4.03 5.94 -106.77 -0.63 3.40 16 7 C -0.42 -11.29 9.14 -37.94 -0.35 -11.64 16 8 H 0.08 2.05 7.75 -52.48 -0.41 1.64 16 9 C 0.08 1.85 5.50 -17.30 -0.10 1.76 16 10 N -0.79 -19.48 10.32 55.56 0.57 -18.90 16 11 Si 0.92 18.38 29.56 -169.99 -5.03 13.36 16 12 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 13 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 14 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 15 C -0.24 -6.28 6.77 -82.37 -0.56 -6.84 16 16 C 0.60 14.26 6.03 31.57 0.19 14.45 16 17 O -0.53 -13.21 17.83 -19.55 -0.35 -13.56 16 18 O -0.51 -10.07 13.55 -41.73 -0.57 -10.63 16 19 N -0.37 -8.86 3.12 -55.24 -0.17 -9.03 16 20 C 0.11 2.16 6.74 -82.12 -0.55 1.60 16 21 C -0.10 -1.54 9.55 36.01 0.34 -1.19 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.07 0.74 7.83 -51.93 -0.41 0.33 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.17 4.57 5.78 -52.48 -0.30 4.26 16 26 H 0.28 6.32 8.29 -40.82 -0.34 5.98 16 27 H 0.39 5.32 8.98 45.56 0.41 5.73 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.08 1.04 7.00 -51.93 -0.36 0.68 16 30 H 0.07 1.20 7.04 -51.93 -0.37 0.84 16 LS Contribution 279.01 15.07 4.20 4.20 Total: -1.00 -30.84 279.01 -7.74 -38.58 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -1.84 Total: 6.39 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -2.06 Total: -8.87 kcal Atomic # 7 Polarization: -28.34 SS G_CDS: 0.40 Total: -27.94 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.91 Total: -24.19 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.36 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.51 Total: -1.53 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.84 -7.74 -38.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259525534.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.075 kcal (2) G-P(sol) polarization free energy of solvation -30.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds