Wall clock time and date at job start Mon Mar 30 2020 06:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.46486 * 126.49959 * 2 1 4 4 C 1.39645 * 134.01620 * 359.97438 * 3 2 1 5 5 C 1.36725 * 119.75381 * 179.97438 * 4 3 2 6 6 Cl 1.73599 * 119.74624 * 179.97438 * 5 4 3 7 7 C 1.38927 * 120.50210 * 0.28365 * 5 4 3 8 8 C 1.37745 * 120.64947 * 359.45506 * 7 5 4 9 9 C 1.39118 * 119.79983 * 0.51659 * 8 7 5 10 10 N 1.37738 * 133.49300 * 179.76715 * 9 8 7 11 11 H 0.97000 * 125.06679 * 359.97438 * 10 9 8 12 12 C 1.34241 * 126.49592 * 179.97438 * 2 1 3 13 13 C 1.50702 * 125.03514 * 0.03807 * 12 2 1 14 14 H 1.09005 * 109.46603 * 324.97275 * 13 12 2 15 15 O 1.42903 * 109.46723 * 204.97667 * 13 12 2 16 16 C 1.50695 * 109.47229 * 84.97263 * 13 12 2 17 17 H 1.08001 * 119.99920 * 0.02562 * 16 13 12 18 18 C 1.37878 * 120.00064 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99665 * 180.02562 * 18 16 13 20 20 Si 1.86800 * 119.99726 * 0.02562 * 18 16 13 21 21 H 1.48500 * 109.46812 * 90.00196 * 20 18 16 22 22 H 1.48504 * 109.46752 * 209.99820 * 20 18 16 23 23 H 1.48490 * 109.47236 * 330.00042 * 20 18 16 24 24 H 1.09000 * 109.47129 * 90.02000 * 1 2 3 25 25 H 1.08995 * 109.47305 * 210.02796 * 1 2 3 26 26 H 1.09005 * 109.47245 * 330.02824 * 1 2 3 27 27 H 1.07997 * 120.12226 * 0.02562 * 4 3 2 28 28 H 1.07990 * 119.67466 * 179.69890 * 7 5 4 29 29 H 1.08002 * 120.10070 * 180.26158 * 8 7 5 30 30 H 0.96695 * 113.99835 * 299.99483 * 15 13 12 31 31 H 0.97004 * 119.99491 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3783 1.1775 0.0000 4 6 2.1482 2.5549 -0.0004 5 6 3.2071 3.4197 0.0002 6 17 2.9209 5.1320 -0.0010 7 6 4.5105 2.9387 -0.0046 8 6 4.7589 1.5838 0.0012 9 6 3.6962 0.6860 0.0010 10 7 3.6169 -0.6891 0.0017 11 1 4.3774 -1.2911 0.0022 12 6 2.3054 -1.0792 0.0005 13 6 1.8280 -2.5086 0.0003 14 1 0.9143 -2.5865 0.5897 15 8 2.8352 -3.3472 0.5698 16 6 1.5515 -2.9457 -1.4151 17 1 1.7064 -2.2574 -2.2328 18 6 1.1007 -4.2243 -1.6662 19 7 0.8600 -4.6058 -2.9016 20 14 0.8321 -5.4144 -0.2517 21 1 -0.5618 -5.2873 0.2442 22 1 1.0653 -6.8034 -0.7226 23 1 1.7793 -5.0988 0.8475 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3634 0.8903 0.5134 27 1 1.1375 2.9356 -0.0005 28 1 5.3369 3.6338 -0.0089 29 1 5.7757 1.2196 0.0017 30 1 3.6776 -3.3276 0.0954 31 1 0.5432 -5.5055 -3.0782 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259532172.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:33 Heat of formation + Delta-G solvation = -27.720611 kcal Electronic energy + Delta-G solvation = -17355.081930 eV Core-core repulsion = 14433.530649 eV Total energy + Delta-G solvation = -2921.551281 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.34295 -38.85110 -37.63175 -36.58078 -34.56365 -34.03025 -31.35608 -30.61585 -29.09754 -27.29182 -25.01879 -23.16049 -22.22268 -20.23179 -19.59381 -18.72779 -17.65231 -17.03595 -16.86609 -15.76104 -15.70399 -15.52397 -15.03084 -14.86116 -14.52834 -14.00383 -13.83036 -13.50875 -13.49002 -13.37838 -13.16066 -12.75279 -12.66625 -12.23947 -12.10612 -11.73187 -11.61613 -11.26616 -10.89484 -10.54983 -10.43979 -9.00988 -8.50300 -8.37132 -6.55606 0.10218 0.47800 1.25067 1.41134 1.46946 1.72001 1.75191 2.18728 2.40564 2.79828 2.98179 3.67693 3.82267 3.88457 4.11340 4.25246 4.36382 4.47216 4.60522 4.82890 4.88888 4.92253 4.98423 5.11355 5.20134 5.31295 5.33664 5.44287 5.71755 5.88141 6.04311 6.13113 6.54679 6.67604 6.98067 7.23884 8.75772 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.039309 B = 0.004836 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.138125 B = 5788.221057 C = 6061.163605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.200 4.200 3 C -0.113 4.113 4 C -0.072 4.072 5 C -0.066 4.066 6 Cl -0.073 7.073 7 C -0.097 4.097 8 C -0.111 4.111 9 C 0.083 3.917 10 N -0.577 5.577 11 H 0.424 0.576 12 C 0.086 3.914 13 C 0.261 3.739 14 H 0.081 0.919 15 O -0.575 6.575 16 C -0.554 4.554 17 H 0.032 0.968 18 C 0.037 3.963 19 N -0.933 5.933 20 Si 0.935 3.065 21 H -0.280 1.280 22 H -0.296 1.296 23 H -0.204 1.204 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.136 0.864 28 H 0.161 0.839 29 H 0.157 0.843 30 H 0.368 0.632 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.754 13.197 8.337 17.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.206 4.206 3 C -0.118 4.118 4 C -0.091 4.091 5 C -0.094 4.094 6 Cl -0.044 7.044 7 C -0.117 4.117 8 C -0.131 4.131 9 C -0.026 4.026 10 N -0.181 5.181 11 H 0.263 0.737 12 C -0.023 4.023 13 C 0.203 3.797 14 H 0.099 0.901 15 O -0.381 6.381 16 C -0.592 4.592 17 H 0.050 0.950 18 C -0.164 4.164 19 N -0.571 5.571 20 Si 0.758 3.242 21 H -0.206 1.206 22 H -0.223 1.223 23 H -0.125 1.125 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.154 0.846 28 H 0.178 0.822 29 H 0.174 0.826 30 H 0.216 0.784 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.293 12.980 8.661 16.826 hybrid contribution 0.233 -0.803 -0.650 1.059 sum 6.526 12.177 8.011 15.970 Atomic orbital electron populations 1.20033 0.88903 1.02259 1.01377 1.20228 0.96199 0.90039 1.14122 1.19149 0.92747 0.92916 1.07005 1.20152 0.99257 0.90127 0.99607 1.20304 0.94811 0.84466 1.09773 1.98335 1.96626 1.12169 1.97317 1.20896 0.95369 0.94814 1.00595 1.20259 0.97550 0.91010 1.04314 1.18644 0.95975 0.83644 1.04292 1.41522 1.07131 1.04975 1.64470 0.73740 1.21173 0.83413 0.97309 1.00398 1.18359 0.88358 0.80158 0.92858 0.90121 1.86709 1.25180 1.68351 1.57906 1.21412 1.47215 0.98505 0.92037 0.94958 1.25800 0.92566 0.99957 0.98093 1.70065 1.45107 1.20029 1.21902 0.86045 0.79721 0.76633 0.81796 1.20590 1.22263 1.12533 0.92895 0.92097 0.90474 0.84640 0.82173 0.82551 0.78375 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.34 10.17 71.23 0.72 -1.62 16 2 C -0.20 -7.59 6.31 -18.63 -0.12 -7.71 16 3 C -0.11 -3.86 6.35 -20.20 -0.13 -3.99 16 4 C -0.07 -2.12 9.81 22.26 0.22 -1.90 16 5 C -0.07 -1.68 6.28 22.08 0.14 -1.54 16 6 Cl -0.07 -1.62 28.93 -2.72 -0.08 -1.70 16 7 C -0.10 -2.18 9.79 22.32 0.22 -1.96 16 8 C -0.11 -2.67 10.07 22.36 0.23 -2.44 16 9 C 0.08 2.59 7.28 39.02 0.28 2.88 16 10 N -0.58 -18.96 5.92 -175.89 -1.04 -20.00 16 11 H 0.42 11.40 8.11 -92.71 -0.75 10.65 16 12 C 0.09 3.39 6.00 40.87 0.25 3.64 16 13 C 0.26 11.33 2.47 29.10 0.07 11.40 16 14 H 0.08 3.54 6.63 -2.38 -0.02 3.52 16 15 O -0.57 -22.73 10.04 -148.98 -1.50 -24.23 16 16 C -0.55 -29.51 9.33 25.60 0.24 -29.27 16 17 H 0.03 1.97 7.98 -2.91 -0.02 1.95 16 18 C 0.04 2.01 5.47 84.65 0.46 2.48 16 19 N -0.93 -55.67 13.96 21.45 0.30 -55.37 16 20 Si 0.93 42.06 26.99 68.60 1.85 43.91 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 22 H -0.30 -13.41 7.11 99.48 0.71 -12.71 16 23 H -0.20 -8.58 5.31 99.48 0.53 -8.05 16 24 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.06 2.07 7.16 -2.39 -0.02 2.05 16 26 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 27 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 28 H 0.16 2.60 8.06 -2.92 -0.02 2.58 16 29 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 30 H 0.37 12.34 8.18 -74.06 -0.61 11.73 16 31 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -64.51 281.51 1.77 -62.75 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: -0.35 Total: 24.68 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: 2.58 Total: -30.04 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -0.74 Total: -75.37 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -1.50 Total: -24.23 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.85 Total: 43.91 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.08 Total: -1.70 kcal Total: -64.51 1.77 -62.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259532172.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.026 kcal (2) G-P(sol) polarization free energy of solvation -64.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds