Wall clock time and date at job start Mon Mar 30 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00062 * 2 1 4 4 H 1.48505 * 109.46881 * 269.99910 * 3 2 1 5 5 H 1.48499 * 109.47273 * 29.99853 * 3 2 1 6 6 H 1.48505 * 109.47331 * 150.00141 * 3 2 1 7 7 C 1.37884 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99802 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99951 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46965 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47077 * 305.00296 * 10 9 7 12 12 N 1.46900 * 109.46845 * 65.00157 * 10 9 7 13 13 C 1.50700 * 109.46893 * 185.00566 * 10 9 7 14 14 C 1.33995 * 126.90177 * 265.04169 * 13 10 9 15 15 O 1.34436 * 110.15186 * 179.97438 * 14 13 10 16 16 C 1.34850 * 110.89471 * 359.97438 * 15 14 13 17 17 C 1.40480 * 107.26369 * 0.02562 * 16 15 14 18 18 C 1.39412 * 120.16132 * 179.97438 * 17 16 15 19 19 C 1.37748 * 119.62810 * 359.97438 * 18 17 16 20 20 C 1.38719 * 120.28274 * 0.02562 * 19 18 17 21 21 C 1.37965 * 120.67719 * 359.97438 * 20 19 18 22 22 Cl 1.73604 * 120.03149 * 180.02562 * 21 20 19 23 23 H 0.96997 * 120.00182 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46731 * 60.00978 * 9 7 2 25 25 H 1.09001 * 109.47172 * 300.00681 * 9 7 2 26 26 H 1.00896 * 111.00209 * 296.04207 * 12 10 9 27 27 H 1.00898 * 110.99979 * 60.00101 * 12 10 9 28 28 H 1.08002 * 124.92772 * 359.96287 * 14 13 10 29 29 H 1.07997 * 120.18369 * 180.02562 * 18 17 16 30 30 H 1.07994 * 119.86045 * 180.02562 * 19 18 17 31 31 H 1.08008 * 119.66085 * 180.27246 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 1 3.5872 -3.1755 0.8422 12 7 3.6324 -3.2936 -1.2549 13 6 5.5235 -2.6383 0.1235 14 6 6.4129 -2.7010 -0.8768 15 8 7.6642 -2.6796 -0.3859 16 6 7.6515 -2.6012 0.9602 17 6 6.3062 -2.5707 1.3634 18 6 5.9822 -2.4908 2.7170 19 6 6.9885 -2.4425 3.6563 20 6 8.3175 -2.4726 3.2599 21 6 8.6519 -2.5515 1.9237 22 17 10.3206 -2.5887 1.4464 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6798 0.8895 25 1 3.8746 -0.6807 -0.8905 26 1 2.6287 -3.3627 -1.3308 27 1 4.0230 -2.8124 -2.0511 28 1 6.1610 -2.7604 -1.9254 29 1 4.9480 -2.4677 3.0273 30 1 6.7418 -2.3810 4.7059 31 1 9.0985 -2.4386 4.0052 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259533391.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:11 Heat of formation + Delta-G solvation = 11.984247 kcal Electronic energy + Delta-G solvation = -17248.055916 eV Core-core repulsion = 14328.226366 eV Total energy + Delta-G solvation = -2919.829550 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.34363 -37.99287 -36.54909 -36.12671 -32.70580 -31.63139 -30.21535 -29.09248 -28.64910 -24.70425 -23.25233 -22.38950 -21.32436 -19.36301 -17.62031 -17.13692 -16.58558 -16.02947 -15.86325 -14.95004 -14.59924 -14.28952 -14.11086 -13.58653 -13.13816 -12.97966 -12.76432 -12.23883 -12.04030 -11.99138 -11.58870 -11.28392 -11.14541 -10.97989 -10.66862 -10.44676 -9.93819 -9.55336 -9.34846 -8.68354 -8.62184 -8.16810 -7.80029 -6.18617 -4.18897 0.82441 1.27560 2.01083 2.52360 2.84043 3.20892 3.29963 3.34210 3.61985 4.33156 4.53350 4.70194 4.91844 5.05902 5.15954 5.22795 5.31964 5.52897 5.62981 5.74284 5.98342 6.20411 6.22270 6.32650 6.40428 6.52815 6.65698 6.98202 7.11721 7.20803 7.60061 7.80545 8.07415 8.34780 8.83419 9.43539 10.93848 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.026495 B = 0.005244 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.556688 B = 5337.988441 C = 5614.429603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.036 4.036 10 C 0.167 3.833 11 H 0.085 0.915 12 N -0.840 5.840 13 C -0.142 4.142 14 C 0.002 3.998 15 O -0.189 6.189 16 C 0.057 3.943 17 C -0.105 4.105 18 C -0.056 4.056 19 C -0.133 4.133 20 C -0.089 4.089 21 C -0.029 4.029 22 Cl -0.069 7.069 23 H 0.265 0.735 24 H 0.021 0.979 25 H 0.012 0.988 26 H 0.356 0.644 27 H 0.327 0.673 28 H 0.209 0.791 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.156 -4.887 3.958 17.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.075 4.075 10 C 0.056 3.944 11 H 0.103 0.897 12 N -0.369 5.369 13 C -0.144 4.144 14 C -0.062 4.062 15 O -0.090 6.090 16 C 0.008 3.992 17 C -0.107 4.107 18 C -0.074 4.074 19 C -0.151 4.151 20 C -0.108 4.108 21 C -0.056 4.056 22 Cl -0.040 7.040 23 H 0.074 0.926 24 H 0.039 0.961 25 H 0.030 0.970 26 H 0.171 0.829 27 H 0.138 0.862 28 H 0.225 0.775 29 H 0.156 0.844 30 H 0.156 0.844 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 16.760 -5.430 4.044 18.076 hybrid contribution -0.140 1.976 -0.294 2.003 sum 16.620 -3.454 3.750 17.384 Atomic orbital electron populations 1.69897 1.06260 1.27101 1.50248 1.24979 0.94662 0.99115 0.94217 0.86828 0.80452 0.83741 0.78601 1.20299 1.21231 1.19029 1.21022 0.88902 0.94576 1.52001 0.90689 1.20293 0.97563 0.92667 0.97010 1.19694 0.85506 0.95676 0.93548 0.89695 1.59171 1.18044 1.56340 1.03325 1.21428 0.97366 1.05539 0.90029 1.23674 0.79314 1.03603 0.99603 1.84041 1.30594 1.76164 1.18187 1.19125 0.93911 1.03617 0.82533 1.19793 0.91478 1.04800 0.94643 1.20804 1.00611 0.95718 0.90275 1.20944 0.91311 1.02850 0.99999 1.20799 0.97537 1.00148 0.92309 1.19601 0.83278 1.11064 0.91688 1.98359 1.16175 1.97131 1.92362 0.92556 0.96112 0.97001 0.82900 0.86238 0.77479 0.84363 0.84442 0.84120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.48 13.96 55.43 0.77 -25.71 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.53 -13.90 9.10 -34.44 -0.31 -14.22 16 8 H 0.08 2.10 7.39 -52.49 -0.39 1.71 16 9 C -0.04 -0.82 3.67 -27.88 -0.10 -0.92 16 10 C 0.17 3.15 3.28 -68.86 -0.23 2.93 16 11 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 12 N -0.84 -14.36 8.96 -5.65 -0.05 -14.41 16 13 C -0.14 -2.45 5.47 -102.66 -0.56 -3.01 16 14 C 0.00 0.03 11.27 29.24 0.33 0.36 16 15 O -0.19 -3.04 10.58 3.83 0.04 -3.00 16 16 C 0.06 0.91 7.20 -38.46 -0.28 0.63 16 17 C -0.11 -1.75 6.38 -105.16 -0.67 -2.42 16 18 C -0.06 -0.81 10.10 -39.32 -0.40 -1.21 16 19 C -0.13 -1.56 10.03 -39.58 -0.40 -1.95 16 20 C -0.09 -1.04 9.79 -39.50 -0.39 -1.43 16 21 C -0.03 -0.41 6.33 -39.41 -0.25 -0.66 16 22 Cl -0.07 -0.87 28.96 -51.86 -1.50 -2.37 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 25 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 26 H 0.36 6.48 7.90 -39.29 -0.31 6.17 16 27 H 0.33 5.06 8.00 -39.29 -0.31 4.74 16 28 H 0.21 2.54 7.34 -52.49 -0.39 2.15 16 29 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 31 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 LS Contribution 284.81 15.07 4.29 4.29 Total: -1.00 -29.72 284.81 -7.49 -37.20 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -3.02 Total: 7.45 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -3.35 Total: -19.96 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.72 Total: -40.11 kcal Atomic # 8 Polarization: -3.04 SS G_CDS: 0.04 Total: -3.00 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.72 -7.49 -37.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259533391.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.188 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds