Wall clock time and date at job start Mon Mar 30 2020 06:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00062 * 2 1 4 4 H 1.48505 * 109.46881 * 269.99910 * 3 2 1 5 5 H 1.48499 * 109.47273 * 29.99853 * 3 2 1 6 6 H 1.48505 * 109.47331 * 150.00141 * 3 2 1 7 7 C 1.37884 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99802 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99951 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46965 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47077 * 305.00296 * 10 9 7 12 12 N 1.46900 * 109.46845 * 65.00157 * 10 9 7 13 13 C 1.50700 * 109.46893 * 185.00566 * 10 9 7 14 14 C 1.33995 * 126.90177 * 265.04169 * 13 10 9 15 15 O 1.34436 * 110.15186 * 179.97438 * 14 13 10 16 16 C 1.34850 * 110.89471 * 359.97438 * 15 14 13 17 17 C 1.40480 * 107.26369 * 0.02562 * 16 15 14 18 18 C 1.39412 * 120.16132 * 179.97438 * 17 16 15 19 19 C 1.37748 * 119.62810 * 359.97438 * 18 17 16 20 20 C 1.38719 * 120.28274 * 0.02562 * 19 18 17 21 21 C 1.37965 * 120.67719 * 359.97438 * 20 19 18 22 22 Cl 1.73604 * 120.03149 * 180.02562 * 21 20 19 23 23 H 0.96997 * 120.00182 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46731 * 60.00978 * 9 7 2 25 25 H 1.09001 * 109.47172 * 300.00681 * 9 7 2 26 26 H 1.00896 * 111.00209 * 296.04207 * 12 10 9 27 27 H 1.00898 * 110.99979 * 60.00101 * 12 10 9 28 28 H 1.08002 * 124.92772 * 359.96287 * 14 13 10 29 29 H 1.07997 * 120.18369 * 180.02562 * 18 17 16 30 30 H 1.07994 * 119.86045 * 180.02562 * 19 18 17 31 31 H 1.08008 * 119.66085 * 180.27246 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 1 3.5872 -3.1755 0.8422 12 7 3.6324 -3.2936 -1.2549 13 6 5.5235 -2.6383 0.1235 14 6 6.4129 -2.7010 -0.8768 15 8 7.6642 -2.6796 -0.3859 16 6 7.6515 -2.6012 0.9602 17 6 6.3062 -2.5707 1.3634 18 6 5.9822 -2.4908 2.7170 19 6 6.9885 -2.4425 3.6563 20 6 8.3175 -2.4726 3.2599 21 6 8.6519 -2.5515 1.9237 22 17 10.3206 -2.5887 1.4464 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6798 0.8895 25 1 3.8746 -0.6807 -0.8905 26 1 2.6287 -3.3627 -1.3308 27 1 4.0230 -2.8124 -2.0511 28 1 6.1610 -2.7604 -1.9254 29 1 4.9480 -2.4677 3.0273 30 1 6.7418 -2.3810 4.7059 31 1 9.0985 -2.4386 4.0052 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259533391.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:10 Heat of formation + Delta-G solvation = -6.782976 kcal Electronic energy + Delta-G solvation = -17248.869724 eV Core-core repulsion = 14328.226366 eV Total energy + Delta-G solvation = -2920.643357 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.50266 -39.02442 -37.84550 -37.37536 -34.67506 -32.91349 -31.26920 -30.62351 -30.07239 -26.38225 -24.36050 -23.45031 -23.01139 -20.69653 -19.24712 -18.41746 -17.99742 -17.23298 -16.90957 -16.51112 -16.12379 -15.64737 -15.29830 -15.02869 -14.90301 -14.17948 -14.01119 -13.82398 -13.65298 -13.13413 -12.89533 -12.63909 -12.43388 -12.30252 -12.16483 -11.98257 -11.86457 -11.36656 -10.83075 -10.73671 -9.69379 -9.55684 -9.04664 -8.32595 -6.36151 -0.23882 0.21802 0.99437 1.29565 1.31386 1.33945 1.43602 1.73202 2.30923 2.55608 3.02552 3.40379 3.55907 3.84877 3.94358 4.19361 4.25751 4.30947 4.36979 4.58933 4.71376 4.75440 5.00216 5.14042 5.17624 5.23191 5.34005 5.46571 5.59155 5.60007 6.01256 6.19473 6.34135 6.66976 6.71285 7.29214 8.82916 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.026495 B = 0.005244 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.556688 B = 5337.988441 C = 5614.429603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.016 3.984 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.258 1.258 7 C -0.523 4.523 8 H 0.047 0.953 9 C -0.029 4.029 10 C 0.182 3.818 11 H 0.068 0.932 12 N -0.831 5.831 13 C -0.173 4.173 14 C 0.016 3.984 15 O -0.195 6.195 16 C 0.035 3.965 17 C -0.129 4.129 18 C -0.079 4.079 19 C -0.116 4.116 20 C -0.079 4.079 21 C -0.039 4.039 22 Cl -0.060 7.060 23 H 0.266 0.734 24 H 0.012 0.988 25 H 0.016 0.984 26 H 0.349 0.651 27 H 0.339 0.661 28 H 0.236 0.764 29 H 0.136 0.864 30 H 0.174 0.826 31 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.545 -4.450 4.699 19.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.182 4.182 3 Si 0.763 3.237 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.182 1.182 7 C -0.561 4.561 8 H 0.065 0.935 9 C -0.068 4.068 10 C 0.070 3.930 11 H 0.086 0.914 12 N -0.359 5.359 13 C -0.175 4.175 14 C -0.048 4.048 15 O -0.096 6.096 16 C -0.013 4.013 17 C -0.131 4.131 18 C -0.097 4.097 19 C -0.134 4.134 20 C -0.097 4.097 21 C -0.067 4.067 22 Cl -0.031 7.031 23 H 0.075 0.925 24 H 0.030 0.970 25 H 0.034 0.966 26 H 0.163 0.837 27 H 0.151 0.849 28 H 0.252 0.748 29 H 0.154 0.846 30 H 0.192 0.808 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 19.179 -5.004 4.780 20.390 hybrid contribution -0.842 1.752 -0.464 1.999 sum 18.337 -3.252 4.316 19.117 Atomic orbital electron populations 1.70030 1.07946 1.28019 1.52302 1.25795 0.95355 1.02751 0.94286 0.85841 0.79311 0.79543 0.79013 1.19357 1.21049 1.18188 1.21298 0.91021 0.93392 1.50379 0.93488 1.20205 0.94756 0.95290 0.96524 1.19336 0.86930 0.93080 0.93678 0.91352 1.59142 1.17473 1.56045 1.03276 1.21265 0.96318 1.08403 0.91470 1.24140 0.78873 1.01381 1.00407 1.84033 1.30690 1.76293 1.18622 1.19433 0.94365 1.04952 0.82598 1.20014 0.91817 1.05913 0.95328 1.21015 1.01454 0.97069 0.90206 1.21372 0.90660 1.00146 1.01213 1.21277 0.98439 0.97925 0.92078 1.19905 0.83531 1.11055 0.92163 1.98360 1.15179 1.97088 1.92444 0.92500 0.96981 0.96586 0.83729 0.84927 0.74830 0.84647 0.80847 0.80605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.79 13.96 21.45 0.30 -56.49 16 2 C 0.02 0.90 5.47 84.66 0.46 1.36 16 3 Si 0.94 43.53 27.47 68.60 1.88 45.41 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.26 -11.53 6.54 99.48 0.65 -10.88 16 7 C -0.52 -28.05 9.10 25.60 0.23 -27.82 16 8 H 0.05 2.73 7.39 -2.91 -0.02 2.71 16 9 C -0.03 -1.28 3.67 29.85 0.11 -1.17 16 10 C 0.18 6.88 3.28 44.17 0.14 7.03 16 11 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 12 N -0.83 -28.20 8.96 -171.79 -1.54 -29.74 16 13 C -0.17 -5.88 5.47 -18.60 -0.10 -5.98 16 14 C 0.02 0.48 11.27 66.85 0.75 1.23 16 15 O -0.20 -6.06 10.58 -9.22 -0.10 -6.16 16 16 C 0.03 1.07 7.20 22.99 0.17 1.23 16 17 C -0.13 -4.20 6.38 -20.21 -0.13 -4.33 16 18 C -0.08 -2.20 10.10 22.44 0.23 -1.98 16 19 C -0.12 -2.37 10.03 22.27 0.22 -2.14 16 20 C -0.08 -1.57 9.79 22.32 0.22 -1.35 16 21 C -0.04 -1.01 6.33 22.38 0.14 -0.87 16 22 Cl -0.06 -1.36 28.96 -2.72 -0.08 -1.44 16 23 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 24 H 0.01 0.55 7.20 -2.39 -0.02 0.54 16 25 H 0.02 0.70 7.57 -2.39 -0.02 0.68 16 26 H 0.35 12.88 7.90 -89.70 -0.71 12.17 16 27 H 0.34 10.11 8.00 -89.70 -0.72 9.39 16 28 H 0.24 5.24 7.34 -2.91 -0.02 5.22 16 29 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 30 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 31 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -64.46 284.81 2.62 -61.85 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -0.30 Total: 21.35 kcal Atomic # 6 Polarization: -37.23 SS G_CDS: 2.45 Total: -34.78 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -1.24 Total: -86.23 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.10 Total: -6.16 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.41 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -64.46 2.62 -61.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259533391.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.065 kcal (2) G-P(sol) polarization free energy of solvation -64.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds