Wall clock time and date at job start Mon Mar 30 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99771 * 2 1 4 4 H 1.48498 * 109.47410 * 270.00183 * 3 2 1 5 5 H 1.48504 * 109.46924 * 30.00015 * 3 2 1 6 6 H 1.48504 * 109.47023 * 149.99835 * 3 2 1 7 7 C 1.37874 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00382 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99723 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46858 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47152 * 55.00173 * 10 9 7 12 12 N 1.46897 * 109.46995 * 294.99921 * 10 9 7 13 13 C 1.50703 * 109.46956 * 175.00090 * 10 9 7 14 14 C 1.33986 * 126.90797 * 100.02201 * 13 10 9 15 15 O 1.34444 * 110.15822 * 179.97438 * 14 13 10 16 16 C 1.34855 * 110.88892 * 0.02562 * 15 14 13 17 17 C 1.40476 * 107.26266 * 359.97438 * 16 15 14 18 18 C 1.39416 * 120.16288 * 180.02562 * 17 16 15 19 19 C 1.37755 * 119.62404 * 0.02562 * 18 17 16 20 20 C 1.38717 * 120.28439 * 0.02562 * 19 18 17 21 21 C 1.37962 * 120.67465 * 0.02562 * 20 19 18 22 22 Cl 1.73603 * 120.03025 * 179.97438 * 21 20 19 23 23 H 0.96995 * 119.99820 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47420 * 60.00368 * 9 7 2 25 25 H 1.08999 * 109.47010 * 300.00116 * 9 7 2 26 26 H 1.00895 * 111.00045 * 299.99956 * 12 10 9 27 27 H 1.00894 * 110.99954 * 63.95873 * 12 10 9 28 28 H 1.07996 * 124.92402 * 359.97438 * 14 13 10 29 29 H 1.08001 * 120.18756 * 180.02562 * 18 17 16 30 30 H 1.07996 * 119.86100 * 180.02562 * 19 18 17 31 31 H 1.07999 * 119.66270 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 1 2.9296 -3.5551 0.8413 12 7 3.0085 -3.6537 -1.2558 13 6 1.4961 -4.9636 0.1233 14 6 1.1874 -5.8117 -0.8670 15 8 0.5147 -6.8685 -0.3791 16 6 0.3514 -6.7603 0.9551 17 6 0.9579 -5.5573 1.3531 18 6 0.9462 -5.1772 2.6944 19 6 0.3372 -5.9881 3.6267 20 6 -0.2612 -7.1768 3.2355 21 6 -0.2558 -7.5652 1.9117 22 17 -1.0092 -9.0566 1.4407 23 1 -0.4849 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5570 0.8897 26 1 2.3963 -3.7516 -2.0517 27 1 3.5702 -2.8191 -1.3320 28 1 1.4421 -5.6673 -1.9065 29 1 1.4120 -4.2522 3.0007 30 1 0.3255 -5.6971 4.6667 31 1 -0.7355 -7.8051 3.9749 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259533393.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:12 Heat of formation + Delta-G solvation = 8.385847 kcal Electronic energy + Delta-G solvation = -17189.195930 eV Core-core repulsion = 14269.210342 eV Total energy + Delta-G solvation = -2919.985588 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.22701 -37.89059 -36.44989 -35.99436 -32.73654 -31.52465 -30.11205 -28.92967 -28.09294 -24.68652 -23.16776 -22.27815 -21.58554 -19.28244 -17.42963 -16.95213 -16.35106 -15.89424 -15.75635 -14.78567 -14.64955 -14.43999 -13.99538 -13.48950 -12.91399 -12.73225 -12.59596 -12.21144 -11.90520 -11.64760 -11.47535 -11.16755 -11.04434 -10.90987 -10.74261 -10.45275 -10.09445 -9.44888 -9.22742 -8.52650 -8.50926 -8.06904 -7.66792 -6.13424 -4.18827 0.93120 1.37976 2.09829 2.64693 2.95106 3.22938 3.30539 3.32812 3.72793 4.33961 4.64552 4.81321 5.02399 5.15075 5.22955 5.32801 5.41113 5.64211 5.74383 5.88073 6.08376 6.31767 6.34398 6.46510 6.59543 6.65047 6.81068 7.28812 7.40331 7.50960 7.79336 7.93935 8.10768 8.24141 8.88005 9.46954 10.97087 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.031711 B = 0.004733 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.750931 B = 5914.990384 C = 6333.552676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.002 3.998 10 C 0.156 3.844 11 H 0.079 0.921 12 N -0.841 5.841 13 C -0.137 4.137 14 C -0.001 4.001 15 O -0.190 6.190 16 C 0.057 3.943 17 C -0.104 4.104 18 C -0.053 4.053 19 C -0.134 4.134 20 C -0.090 4.090 21 C -0.030 4.030 22 Cl -0.071 7.071 23 H 0.262 0.738 24 H 0.017 0.983 25 H 0.021 0.979 26 H 0.328 0.672 27 H 0.351 0.649 28 H 0.208 0.792 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.385 -13.351 3.887 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.037 4.037 10 C 0.045 3.955 11 H 0.098 0.902 12 N -0.370 5.370 13 C -0.139 4.139 14 C -0.065 4.065 15 O -0.091 6.091 16 C 0.008 3.992 17 C -0.106 4.106 18 C -0.071 4.071 19 C -0.152 4.152 20 C -0.108 4.108 21 C -0.057 4.057 22 Cl -0.042 7.042 23 H 0.072 0.928 24 H 0.035 0.965 25 H 0.039 0.961 26 H 0.139 0.861 27 H 0.165 0.835 28 H 0.225 0.775 29 H 0.156 0.844 30 H 0.155 0.845 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.430 -14.243 3.978 14.795 hybrid contribution -0.285 1.908 -0.283 1.949 sum 0.145 -12.336 3.695 12.878 Atomic orbital electron populations 1.69971 1.06132 1.26838 1.49855 1.25011 0.94803 0.99324 0.94957 0.86588 0.79862 0.83358 0.78172 1.20613 1.21190 1.19764 1.21137 0.92877 0.90744 1.51881 0.92456 1.19775 0.94388 0.91504 0.97992 1.19932 0.94027 0.88659 0.92882 0.90249 1.59184 1.27848 1.46269 1.03688 1.21417 1.03245 0.98970 0.90261 1.23647 0.97333 0.85831 0.99671 1.84037 1.63371 1.42526 1.19166 1.19123 1.01152 0.95983 0.82924 1.19783 1.01522 0.94446 0.94810 1.20797 0.96616 0.99320 0.90401 1.20929 1.00012 0.94279 1.00020 1.20777 1.00098 0.97503 0.92464 1.19583 1.04202 0.89866 0.92020 1.98353 1.80776 1.32542 1.92525 0.92834 0.96495 0.96107 0.86132 0.83497 0.77536 0.84435 0.84535 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 13.29 55.43 0.74 -25.05 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.53 -13.80 8.55 -34.44 -0.29 -14.09 16 8 H 0.06 1.44 7.15 -52.49 -0.38 1.06 16 9 C 0.00 0.05 4.60 -27.88 -0.13 -0.08 16 10 C 0.16 3.07 3.28 -68.86 -0.23 2.85 16 11 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 12 N -0.84 -14.64 8.90 -5.65 -0.05 -14.69 16 13 C -0.14 -2.51 5.50 -102.66 -0.57 -3.07 16 14 C 0.00 -0.01 11.23 29.24 0.33 0.32 16 15 O -0.19 -3.23 10.58 3.79 0.04 -3.19 16 16 C 0.06 0.96 7.20 -38.46 -0.28 0.69 16 17 C -0.10 -1.83 6.38 -105.16 -0.67 -2.50 16 18 C -0.05 -0.82 10.10 -39.32 -0.40 -1.22 16 19 C -0.13 -1.69 10.03 -39.58 -0.40 -2.09 16 20 C -0.09 -1.12 9.79 -39.51 -0.39 -1.50 16 21 C -0.03 -0.44 6.33 -39.41 -0.25 -0.69 16 22 Cl -0.07 -0.93 28.96 -51.86 -1.50 -2.44 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.33 5.31 8.04 -39.29 -0.32 5.00 16 27 H 0.35 6.25 7.90 -39.29 -0.31 5.94 16 28 H 0.21 2.74 7.34 -52.49 -0.39 2.36 16 29 H 0.14 2.06 8.06 -52.49 -0.42 1.63 16 30 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 288.38 15.07 4.35 4.35 Total: -1.00 -29.41 288.38 -7.87 -37.28 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -3.06 Total: 7.90 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -3.36 Total: -19.83 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.69 Total: -39.74 kcal Atomic # 8 Polarization: -3.23 SS G_CDS: 0.04 Total: -3.19 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.44 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.41 -7.87 -37.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259533393.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.668 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds