Wall clock time and date at job start Mon Mar 30 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99771 * 2 1 4 4 H 1.48498 * 109.47410 * 270.00183 * 3 2 1 5 5 H 1.48504 * 109.46924 * 30.00015 * 3 2 1 6 6 H 1.48504 * 109.47023 * 149.99835 * 3 2 1 7 7 C 1.37874 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00382 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99723 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46858 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47152 * 55.00173 * 10 9 7 12 12 N 1.46897 * 109.46995 * 294.99921 * 10 9 7 13 13 C 1.50703 * 109.46956 * 175.00090 * 10 9 7 14 14 C 1.33986 * 126.90797 * 100.02201 * 13 10 9 15 15 O 1.34444 * 110.15822 * 179.97438 * 14 13 10 16 16 C 1.34855 * 110.88892 * 0.02562 * 15 14 13 17 17 C 1.40476 * 107.26266 * 359.97438 * 16 15 14 18 18 C 1.39416 * 120.16288 * 180.02562 * 17 16 15 19 19 C 1.37755 * 119.62404 * 0.02562 * 18 17 16 20 20 C 1.38717 * 120.28439 * 0.02562 * 19 18 17 21 21 C 1.37962 * 120.67465 * 0.02562 * 20 19 18 22 22 Cl 1.73603 * 120.03025 * 179.97438 * 21 20 19 23 23 H 0.96995 * 119.99820 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47420 * 60.00368 * 9 7 2 25 25 H 1.08999 * 109.47010 * 300.00116 * 9 7 2 26 26 H 1.00895 * 111.00045 * 299.99956 * 12 10 9 27 27 H 1.00894 * 110.99954 * 63.95873 * 12 10 9 28 28 H 1.07996 * 124.92402 * 359.97438 * 14 13 10 29 29 H 1.08001 * 120.18756 * 180.02562 * 18 17 16 30 30 H 1.07996 * 119.86100 * 180.02562 * 19 18 17 31 31 H 1.07999 * 119.66270 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 1 2.9296 -3.5551 0.8413 12 7 3.0085 -3.6537 -1.2558 13 6 1.4961 -4.9636 0.1233 14 6 1.1874 -5.8117 -0.8670 15 8 0.5147 -6.8685 -0.3791 16 6 0.3514 -6.7603 0.9551 17 6 0.9579 -5.5573 1.3531 18 6 0.9462 -5.1772 2.6944 19 6 0.3372 -5.9881 3.6267 20 6 -0.2612 -7.1768 3.2355 21 6 -0.2558 -7.5652 1.9117 22 17 -1.0092 -9.0566 1.4407 23 1 -0.4849 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5570 0.8897 26 1 2.3963 -3.7516 -2.0517 27 1 3.5702 -2.8191 -1.3320 28 1 1.4421 -5.6673 -1.9065 29 1 1.4120 -4.2522 3.0007 30 1 0.3255 -5.6971 4.6667 31 1 -0.7355 -7.8051 3.9749 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259533393.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:12 Heat of formation + Delta-G solvation = -9.641969 kcal Electronic energy + Delta-G solvation = -17189.977675 eV Core-core repulsion = 14269.210342 eV Total energy + Delta-G solvation = -2920.767333 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.47993 -39.01381 -37.79014 -37.35655 -34.68669 -32.86350 -31.26099 -30.25011 -29.86779 -26.47827 -24.37970 -23.43597 -23.29625 -20.67345 -18.93008 -18.33156 -17.94823 -17.20598 -16.88755 -16.57948 -16.20579 -15.66014 -15.24534 -14.91622 -14.50151 -14.19153 -13.99713 -13.74790 -13.44015 -13.07160 -12.84862 -12.65203 -12.50997 -12.30389 -12.18300 -12.00588 -11.96119 -11.24673 -10.74222 -10.58943 -9.68325 -9.52492 -9.02186 -8.21883 -6.34404 -0.22675 0.22725 0.99564 1.33765 1.40799 1.41800 1.52368 1.74611 2.39077 2.56814 3.11661 3.43056 3.58627 3.86706 3.95639 4.20442 4.26831 4.38816 4.40747 4.60355 4.82376 4.83663 5.01045 5.18219 5.29915 5.35837 5.40113 5.56612 5.61373 5.74804 6.02520 6.14208 6.36594 6.69393 6.82260 7.36181 8.89237 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.031711 B = 0.004733 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.750931 B = 5914.990384 C = 6333.552676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.535 4.535 8 H 0.068 0.932 9 C 0.014 3.986 10 C 0.176 3.824 11 H 0.071 0.929 12 N -0.828 5.828 13 C -0.172 4.172 14 C 0.012 3.988 15 O -0.196 6.196 16 C 0.034 3.966 17 C -0.130 4.130 18 C -0.078 4.078 19 C -0.117 4.117 20 C -0.079 4.079 21 C -0.039 4.039 22 Cl -0.059 7.059 23 H 0.262 0.738 24 H -0.010 1.010 25 H -0.013 1.013 26 H 0.336 0.664 27 H 0.350 0.650 28 H 0.234 0.766 29 H 0.132 0.868 30 H 0.174 0.826 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.974 -14.024 4.696 14.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.573 4.573 8 H 0.086 0.914 9 C -0.025 4.025 10 C 0.064 3.936 11 H 0.089 0.911 12 N -0.356 5.356 13 C -0.174 4.174 14 C -0.052 4.052 15 O -0.097 6.097 16 C -0.014 4.014 17 C -0.132 4.132 18 C -0.096 4.096 19 C -0.135 4.135 20 C -0.097 4.097 21 C -0.066 4.066 22 Cl -0.030 7.030 23 H 0.071 0.929 24 H 0.008 0.992 25 H 0.005 0.995 26 H 0.148 0.852 27 H 0.164 0.836 28 H 0.251 0.749 29 H 0.150 0.850 30 H 0.192 0.808 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.035 -14.937 4.782 15.718 hybrid contribution -0.523 2.025 -0.480 2.146 sum 0.511 -12.912 4.302 13.619 Atomic orbital electron populations 1.70118 1.07953 1.27706 1.51418 1.25923 0.95556 1.03239 0.94645 0.85473 0.78697 0.78594 0.78427 1.19829 1.21382 1.18537 1.21543 0.93531 0.91520 1.50731 0.91394 1.19627 0.94523 0.93374 0.94978 1.19509 0.92699 0.87885 0.93546 0.91134 1.59167 1.27358 1.45927 1.03169 1.21357 1.05123 0.99132 0.91756 1.24101 0.95719 0.85014 1.00384 1.84022 1.63478 1.42625 1.19608 1.19454 1.02357 0.96593 0.83020 1.20031 1.02438 0.95138 0.95544 1.20992 0.98123 1.00100 0.90422 1.21367 0.97616 0.93328 1.01162 1.21273 0.98735 0.97462 0.92220 1.19893 1.04061 0.90227 0.92448 1.98355 1.80444 1.31588 1.92596 0.92901 0.99172 0.99499 0.85190 0.83605 0.74949 0.84984 0.80824 0.80457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.29 13.29 21.45 0.28 -55.00 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.96 42.47 29.54 68.60 2.03 44.49 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.54 -28.30 8.55 25.60 0.22 -28.08 16 8 H 0.07 3.38 7.15 -2.91 -0.02 3.36 16 9 C 0.01 0.69 4.60 29.85 0.14 0.83 16 10 C 0.18 7.05 3.28 44.17 0.15 7.19 16 11 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 12 N -0.83 -28.55 8.90 -171.80 -1.53 -30.08 16 13 C -0.17 -6.42 5.50 -18.59 -0.10 -6.52 16 14 C 0.01 0.39 11.23 66.85 0.75 1.14 16 15 O -0.20 -6.65 10.58 -9.36 -0.10 -6.75 16 16 C 0.03 1.14 7.20 22.99 0.17 1.31 16 17 C -0.13 -4.65 6.38 -20.21 -0.13 -4.78 16 18 C -0.08 -2.42 10.10 22.44 0.23 -2.20 16 19 C -0.12 -2.68 10.03 22.27 0.22 -2.46 16 20 C -0.08 -1.74 9.79 22.32 0.22 -1.52 16 21 C -0.04 -1.09 6.33 22.38 0.14 -0.95 16 22 Cl -0.06 -1.45 28.96 -2.72 -0.08 -1.53 16 23 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 24 H -0.01 -0.56 8.14 -2.39 -0.02 -0.57 16 25 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 26 H 0.34 10.74 8.04 -89.70 -0.72 10.02 16 27 H 0.35 12.25 7.90 -89.70 -0.71 11.54 16 28 H 0.23 5.97 7.34 -2.91 -0.02 5.94 16 29 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 30 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 31 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -64.56 288.38 2.81 -61.74 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -0.25 Total: 22.45 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 2.46 Total: -35.32 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -1.24 Total: -85.08 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.10 Total: -6.75 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.53 kcal Total: -64.56 2.81 -61.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259533393.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.101 kcal (2) G-P(sol) polarization free energy of solvation -64.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds