Wall clock time and date at job start Mon Mar 30 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00501 * 2 1 4 4 H 1.48504 * 109.47110 * 270.00290 * 3 2 1 5 5 H 1.48501 * 109.47211 * 30.00157 * 3 2 1 6 6 H 1.48494 * 109.47104 * 150.00352 * 3 2 1 7 7 C 1.37881 * 119.99356 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99855 * 174.75006 * 7 2 1 9 9 C 1.50693 * 120.00447 * 355.02089 * 7 2 1 10 10 H 1.09000 * 109.47014 * 334.90837 * 9 7 2 11 11 C 1.53002 * 109.47367 * 214.90936 * 9 7 2 12 12 N 1.46898 * 109.47172 * 65.43102 * 11 9 7 13 13 C 1.50702 * 109.47112 * 94.90527 * 9 7 2 14 14 C 1.33982 * 126.90272 * 60.02972 * 13 9 7 15 15 O 1.34469 * 110.15364 * 179.97438 * 14 13 9 16 16 C 1.34808 * 110.88496 * 359.97438 * 15 14 13 17 17 C 1.38931 * 133.47717 * 179.97438 * 16 15 14 18 18 C 1.37960 * 119.80790 * 179.24105 * 17 16 15 19 19 Cl 1.73601 * 119.67348 * 180.20668 * 18 17 16 20 20 C 1.38857 * 120.65119 * 0.64103 * 18 17 16 21 21 C 1.36716 * 120.40486 * 359.59072 * 20 18 17 22 22 C 1.39409 * 119.73641 * 359.97438 * 21 20 18 23 23 H 0.97005 * 119.99506 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46805 * 185.42937 * 11 9 7 25 25 H 1.08993 * 109.46907 * 305.42936 * 11 9 7 26 26 H 1.00897 * 110.99986 * 174.42955 * 12 11 9 27 27 H 1.00902 * 110.99697 * 298.38183 * 12 11 9 28 28 H 1.08000 * 124.92353 * 0.02562 * 14 13 9 29 29 H 1.08008 * 120.09762 * 0.02562 * 17 16 15 30 30 H 1.08005 * 119.79421 * 179.61262 * 20 18 17 31 31 H 1.08006 * 120.13031 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.6999 7 6 2.0044 -1.1942 -0.0005 8 1 3.0810 -1.1962 -0.0861 9 6 1.2551 -2.4968 0.1121 10 1 0.3028 -2.3259 0.6141 11 6 2.0861 -3.4948 0.9211 12 7 2.2209 -3.0136 2.3025 13 6 1.0040 -3.0526 -1.2659 14 6 1.9259 -3.3883 -2.1783 15 8 1.3294 -3.8497 -3.2916 16 6 -0.0120 -3.8376 -3.1584 17 6 -1.0592 -4.2023 -3.9954 18 6 -2.3615 -4.0843 -3.5559 19 17 -3.6671 -4.5461 -4.6027 20 6 -2.6387 -3.5914 -2.2877 21 6 -1.6221 -3.2228 -1.4511 22 6 -0.2996 -3.3436 -1.8750 23 1 -0.4850 0.8401 0.0004 24 1 1.5895 -4.4651 0.9212 25 1 3.0745 -3.5925 0.4723 26 1 2.6874 -3.6972 2.8796 27 1 2.7021 -2.1272 2.3312 28 1 2.9934 -3.3017 -2.0394 29 1 -0.8538 -4.5891 -4.9828 30 1 -3.6637 -3.4990 -1.9600 31 1 -1.8428 -2.8403 -0.4654 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259535219.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:06 Heat of formation + Delta-G solvation = 11.468476 kcal Electronic energy + Delta-G solvation = -17468.205307 eV Core-core repulsion = 14548.353392 eV Total energy + Delta-G solvation = -2919.851915 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.74985 -37.69491 -36.02457 -35.60508 -32.37838 -31.91707 -30.12134 -29.02195 -27.13815 -24.38825 -22.93441 -21.81148 -21.31651 -19.04400 -17.08368 -16.67200 -15.88933 -15.66598 -15.42596 -14.91263 -14.46147 -13.89358 -13.70261 -13.42143 -12.86640 -12.80219 -12.79428 -11.84113 -11.67364 -11.30889 -11.13228 -10.98477 -10.92336 -10.73453 -10.62807 -10.44579 -9.74886 -9.29236 -8.93023 -8.57601 -8.12873 -7.80152 -7.33526 -6.12109 -4.17500 1.31601 1.75911 2.21730 3.16839 3.25673 3.32276 3.33657 3.56497 4.14529 4.35294 5.05489 5.16235 5.26388 5.40342 5.57239 5.60423 5.81143 6.00809 6.19630 6.23974 6.33950 6.46827 6.60476 6.65143 6.86258 6.93755 7.07952 7.30999 7.62763 7.77569 7.88812 8.09123 8.20106 8.35616 8.90679 9.47397 10.96004 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021948 B = 0.005946 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.417019 B = 4707.648931 C = 5111.014651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.094 3.906 10 H 0.076 0.924 11 C 0.080 3.920 12 N -0.842 5.842 13 C -0.094 4.094 14 C -0.041 4.041 15 O -0.202 6.202 16 C 0.052 3.948 17 C -0.111 4.111 18 C -0.017 4.017 19 Cl -0.078 7.078 20 C -0.145 4.145 21 C -0.031 4.031 22 C -0.107 4.107 23 H 0.262 0.738 24 H 0.043 0.957 25 H 0.007 0.993 26 H 0.318 0.682 27 H 0.349 0.651 28 H 0.199 0.801 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.729 -7.640 -3.896 8.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.131 4.131 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.075 3.925 10 H 0.094 0.906 11 C -0.051 4.051 12 N -0.371 5.371 13 C -0.097 4.097 14 C -0.103 4.103 15 O -0.105 6.105 16 C 0.004 3.996 17 C -0.130 4.130 18 C -0.044 4.044 19 Cl -0.050 7.050 20 C -0.164 4.164 21 C -0.049 4.049 22 C -0.109 4.109 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.025 0.975 26 H 0.129 0.871 27 H 0.163 0.837 28 H 0.215 0.785 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.677 -7.623 -4.212 9.111 hybrid contribution 1.393 1.084 -0.386 1.807 sum -1.284 -6.539 -4.598 8.096 Atomic orbital electron populations 1.69920 1.05940 1.26801 1.48445 1.24956 0.94810 0.99134 0.94163 0.86644 0.79939 0.83625 0.78057 1.20840 1.21104 1.19841 1.20877 0.92585 0.89820 1.51950 0.92884 1.17481 0.98506 0.91568 0.84907 0.90597 1.21795 0.97247 0.97232 0.88832 1.58585 1.60132 1.07634 1.10771 1.22176 0.88533 0.98073 1.00888 1.23522 0.98447 1.04417 0.83956 1.83917 1.16447 1.70861 1.39228 1.19294 0.82932 1.01916 0.95490 1.19370 0.87978 1.05900 0.99745 1.20257 0.87574 1.04196 0.92370 1.98332 1.48592 1.91166 1.66871 1.20517 1.00043 1.03284 0.92519 1.20341 0.89897 0.94696 0.99964 1.20165 0.95081 1.01570 0.94045 0.92795 0.93858 0.97451 0.87147 0.83725 0.78484 0.85022 0.85094 0.84231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.88 12.84 55.43 0.71 -23.17 16 2 C 0.07 1.92 5.45 -17.82 -0.10 1.83 16 3 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.51 -12.81 7.30 -34.44 -0.25 -13.06 16 8 H 0.05 1.30 7.82 -52.49 -0.41 0.89 16 9 C 0.09 2.17 2.47 -92.92 -0.23 1.94 16 10 H 0.08 1.99 7.38 -51.93 -0.38 1.61 16 11 C 0.08 1.57 6.06 -3.82 -0.02 1.54 16 12 N -0.84 -15.56 9.58 -10.37 -0.10 -15.66 16 13 C -0.09 -2.06 5.06 -102.66 -0.52 -2.58 16 14 C -0.04 -0.80 11.53 29.24 0.34 -0.46 16 15 O -0.20 -3.98 10.58 3.85 0.04 -3.94 16 16 C 0.05 1.02 7.42 -38.48 -0.29 0.74 16 17 C -0.11 -1.87 9.84 -39.43 -0.39 -2.26 16 18 C -0.02 -0.28 6.32 -39.45 -0.25 -0.53 16 19 Cl -0.08 -1.06 28.93 -51.86 -1.50 -2.56 16 20 C -0.14 -2.40 9.75 -39.90 -0.39 -2.79 16 21 C -0.03 -0.59 10.05 -39.70 -0.40 -0.99 16 22 C -0.11 -2.26 6.38 -105.15 -0.67 -2.93 16 23 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 16 26 H 0.32 4.81 9.08 -39.29 -0.36 4.45 16 27 H 0.35 6.65 8.24 -39.29 -0.32 6.33 16 28 H 0.20 3.34 8.06 -52.49 -0.42 2.92 16 29 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 30 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 31 H 0.14 2.72 8.06 -52.48 -0.42 2.30 16 LS Contribution 289.76 15.07 4.37 4.37 Total: -1.00 -27.32 289.76 -7.81 -35.13 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -3.15 Total: 10.07 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -3.17 Total: -19.57 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.61 Total: -38.83 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: 0.04 Total: -3.94 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.32 -7.81 -35.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259535219.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.600 kcal (2) G-P(sol) polarization free energy of solvation -27.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds