Wall clock time and date at job start Mon Mar 30 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00501 * 2 1 4 4 H 1.48504 * 109.47110 * 270.00290 * 3 2 1 5 5 H 1.48501 * 109.47211 * 30.00157 * 3 2 1 6 6 H 1.48494 * 109.47104 * 150.00352 * 3 2 1 7 7 C 1.37881 * 119.99356 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99855 * 174.75006 * 7 2 1 9 9 C 1.50693 * 120.00447 * 355.02089 * 7 2 1 10 10 H 1.09000 * 109.47014 * 334.90837 * 9 7 2 11 11 C 1.53002 * 109.47367 * 214.90936 * 9 7 2 12 12 N 1.46898 * 109.47172 * 65.43102 * 11 9 7 13 13 C 1.50702 * 109.47112 * 94.90527 * 9 7 2 14 14 C 1.33982 * 126.90272 * 60.02972 * 13 9 7 15 15 O 1.34469 * 110.15364 * 179.97438 * 14 13 9 16 16 C 1.34808 * 110.88496 * 359.97438 * 15 14 13 17 17 C 1.38931 * 133.47717 * 179.97438 * 16 15 14 18 18 C 1.37960 * 119.80790 * 179.24105 * 17 16 15 19 19 Cl 1.73601 * 119.67348 * 180.20668 * 18 17 16 20 20 C 1.38857 * 120.65119 * 0.64103 * 18 17 16 21 21 C 1.36716 * 120.40486 * 359.59072 * 20 18 17 22 22 C 1.39409 * 119.73641 * 359.97438 * 21 20 18 23 23 H 0.97005 * 119.99506 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46805 * 185.42937 * 11 9 7 25 25 H 1.08993 * 109.46907 * 305.42936 * 11 9 7 26 26 H 1.00897 * 110.99986 * 174.42955 * 12 11 9 27 27 H 1.00902 * 110.99697 * 298.38183 * 12 11 9 28 28 H 1.08000 * 124.92353 * 0.02562 * 14 13 9 29 29 H 1.08008 * 120.09762 * 0.02562 * 17 16 15 30 30 H 1.08005 * 119.79421 * 179.61262 * 20 18 17 31 31 H 1.08006 * 120.13031 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.6999 7 6 2.0044 -1.1942 -0.0005 8 1 3.0810 -1.1962 -0.0861 9 6 1.2551 -2.4968 0.1121 10 1 0.3028 -2.3259 0.6141 11 6 2.0861 -3.4948 0.9211 12 7 2.2209 -3.0136 2.3025 13 6 1.0040 -3.0526 -1.2659 14 6 1.9259 -3.3883 -2.1783 15 8 1.3294 -3.8497 -3.2916 16 6 -0.0120 -3.8376 -3.1584 17 6 -1.0592 -4.2023 -3.9954 18 6 -2.3615 -4.0843 -3.5559 19 17 -3.6671 -4.5461 -4.6027 20 6 -2.6387 -3.5914 -2.2877 21 6 -1.6221 -3.2228 -1.4511 22 6 -0.2996 -3.3436 -1.8750 23 1 -0.4850 0.8401 0.0004 24 1 1.5895 -4.4651 0.9212 25 1 3.0745 -3.5925 0.4723 26 1 2.6874 -3.6972 2.8796 27 1 2.7021 -2.1272 2.3312 28 1 2.9934 -3.3017 -2.0394 29 1 -0.8538 -4.5891 -4.9828 30 1 -3.6637 -3.4990 -1.9600 31 1 -1.8428 -2.8403 -0.4654 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259535219.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:06 Heat of formation + Delta-G solvation = -4.540652 kcal Electronic energy + Delta-G solvation = -17468.899515 eV Core-core repulsion = 14548.353392 eV Total energy + Delta-G solvation = -2920.546123 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.24850 -39.05948 -37.37992 -37.18025 -34.15868 -33.51696 -31.55310 -30.53907 -28.80080 -26.22166 -24.37536 -23.27195 -22.88712 -20.66323 -18.77372 -18.15926 -17.57200 -17.01130 -16.95581 -16.58717 -16.16525 -15.42937 -15.14881 -14.84536 -14.57884 -14.23657 -14.13361 -13.49860 -13.28492 -13.00197 -12.79648 -12.50095 -12.40018 -12.29667 -12.24252 -11.82925 -11.46210 -11.10942 -10.59371 -10.43647 -9.56681 -9.29760 -8.85460 -8.07025 -6.16612 -0.10386 0.32876 0.93215 1.41777 1.44903 1.52478 1.65617 2.11130 2.45180 2.68451 3.24368 3.67789 3.80848 4.02066 4.12843 4.14257 4.39706 4.57462 4.62777 4.68478 4.87503 5.04046 5.08236 5.18930 5.28922 5.46396 5.58975 5.65390 5.71166 5.97962 6.23901 6.39149 6.55972 6.92788 7.00326 7.49947 9.00021 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021948 B = 0.005946 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.417019 B = 4707.648931 C = 5111.014651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.946 3.054 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.261 1.261 7 C -0.511 4.511 8 H 0.057 0.943 9 C 0.100 3.900 10 H 0.034 0.966 11 C 0.087 3.913 12 N -0.850 5.850 13 C -0.131 4.131 14 C -0.028 4.028 15 O -0.202 6.202 16 C 0.036 3.964 17 C -0.104 4.104 18 C -0.016 4.016 19 Cl -0.047 7.047 20 C -0.132 4.132 21 C -0.054 4.054 22 C -0.136 4.136 23 H 0.257 0.743 24 H 0.048 0.952 25 H 0.021 0.979 26 H 0.339 0.661 27 H 0.345 0.655 28 H 0.224 0.776 29 H 0.159 0.841 30 H 0.157 0.843 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.407 -8.413 -5.047 9.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.177 4.177 3 Si 0.772 3.228 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.185 1.185 7 C -0.549 4.549 8 H 0.076 0.924 9 C 0.080 3.920 10 H 0.052 0.948 11 C -0.044 4.044 12 N -0.381 5.381 13 C -0.133 4.133 14 C -0.091 4.091 15 O -0.104 6.104 16 C -0.012 4.012 17 C -0.123 4.123 18 C -0.043 4.043 19 Cl -0.018 7.018 20 C -0.150 4.150 21 C -0.072 4.072 22 C -0.138 4.138 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.040 0.960 26 H 0.152 0.848 27 H 0.159 0.841 28 H 0.240 0.760 29 H 0.177 0.823 30 H 0.174 0.826 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.339 -8.419 -5.355 10.248 hybrid contribution 1.197 1.224 -0.071 1.713 sum -1.142 -7.195 -5.426 9.084 Atomic orbital electron populations 1.70070 1.07231 1.26871 1.50500 1.25645 0.95425 1.02071 0.94606 0.85756 0.79217 0.80209 0.77583 1.21310 1.21620 1.18478 1.21170 0.92801 0.90670 1.50251 0.92439 1.17286 0.96716 0.92026 0.85930 0.94791 1.21647 0.97302 0.96426 0.88997 1.58509 1.60784 1.08175 1.10627 1.22128 0.89910 1.00393 1.00866 1.23906 0.99219 1.02680 0.83312 1.83912 1.16627 1.70876 1.38980 1.19607 0.83269 1.02795 0.95537 1.19710 0.87501 1.04716 1.00396 1.20355 0.88318 1.03086 0.92496 1.98347 1.46977 1.90762 1.65760 1.20764 1.00530 1.01434 0.92298 1.20337 0.90324 0.96410 1.00148 1.20406 0.95485 1.02767 0.95094 0.93399 0.93350 0.96035 0.84823 0.84115 0.75957 0.82326 0.82587 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.20 12.84 21.45 0.28 -50.93 16 2 C 0.02 1.21 5.45 84.66 0.46 1.67 16 3 Si 0.95 42.08 29.54 68.60 2.03 44.11 16 4 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.51 -25.54 7.30 25.60 0.19 -25.36 16 8 H 0.06 2.76 7.82 -2.91 -0.02 2.74 16 9 C 0.10 4.67 2.47 -12.29 -0.03 4.63 16 10 H 0.03 1.86 7.38 -2.39 -0.02 1.84 16 11 C 0.09 3.39 6.06 86.30 0.52 3.91 16 12 N -0.85 -30.94 9.58 -186.73 -1.79 -32.73 16 13 C -0.13 -5.78 5.06 -18.59 -0.09 -5.87 16 14 C -0.03 -1.09 11.53 66.85 0.77 -0.32 16 15 O -0.20 -7.72 10.58 -9.12 -0.10 -7.82 16 16 C 0.04 1.38 7.42 22.98 0.17 1.55 16 17 C -0.10 -3.31 9.84 22.37 0.22 -3.09 16 18 C -0.02 -0.47 6.32 22.35 0.14 -0.33 16 19 Cl -0.05 -1.15 28.93 -2.72 -0.08 -1.23 16 20 C -0.13 -4.24 9.75 22.06 0.22 -4.02 16 21 C -0.05 -2.13 10.05 22.20 0.22 -1.90 16 22 C -0.14 -5.84 6.38 -20.21 -0.13 -5.97 16 23 H 0.26 14.06 8.31 -92.70 -0.77 13.29 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.34 9.80 9.08 -89.70 -0.81 8.99 16 27 H 0.35 13.00 8.24 -89.69 -0.74 12.26 16 28 H 0.22 7.13 8.06 -2.91 -0.02 7.11 16 29 H 0.16 4.11 8.06 -2.91 -0.02 4.08 16 30 H 0.16 4.12 8.06 -2.91 -0.02 4.09 16 31 H 0.12 5.16 8.06 -2.91 -0.02 5.13 16 Total: -1.00 -58.92 289.76 2.62 -56.30 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: -0.38 Total: 27.40 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 2.66 Total: -35.10 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -1.51 Total: -83.66 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.10 Total: -7.82 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -58.92 2.62 -56.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259535219.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.755 kcal (2) G-P(sol) polarization free energy of solvation -58.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds