Wall clock time and date at job start Mon Mar 30 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99603 * 2 1 4 4 H 1.48503 * 109.47337 * 239.99950 * 3 2 1 5 5 H 1.48502 * 109.47220 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47168 * 119.99984 * 3 2 1 7 7 C 1.37876 * 120.00557 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00032 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99741 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47083 * 300.00485 * 9 7 2 11 11 C 1.53000 * 109.46801 * 60.00200 * 9 7 2 12 12 N 1.46901 * 109.46769 * 184.99750 * 11 9 7 13 13 C 1.50697 * 109.47085 * 180.02562 * 9 7 2 14 14 C 1.33973 * 126.90792 * 299.69187 * 13 9 7 15 15 O 1.34465 * 110.15493 * 179.82774 * 14 13 9 16 16 C 1.34814 * 110.88833 * 0.45263 * 15 14 13 17 17 C 1.38929 * 133.48648 * 179.73136 * 16 15 14 18 18 C 1.37947 * 119.81030 * 179.97438 * 17 16 15 19 19 Cl 1.73604 * 119.67416 * 180.02562 * 18 17 16 20 20 C 1.38852 * 120.65944 * 0.02922 * 18 17 16 21 21 C 1.36724 * 120.40174 * 359.92756 * 20 18 17 22 22 C 1.39417 * 119.73245 * 0.08786 * 21 20 18 23 23 H 0.96999 * 120.00539 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47398 * 305.00045 * 11 9 7 25 25 H 1.09001 * 109.47194 * 65.00225 * 11 9 7 26 26 H 1.00908 * 110.99847 * 180.02562 * 12 11 9 27 27 H 1.00899 * 111.00283 * 303.95539 * 12 11 9 28 28 H 1.08004 * 124.92844 * 0.02562 * 14 13 9 29 29 H 1.07999 * 120.09549 * 359.97438 * 17 16 15 30 30 H 1.08000 * 119.79947 * 179.97438 * 20 18 17 31 31 H 1.07995 * 120.13338 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 6 0.3711 -2.5799 -1.2495 12 7 -0.4521 -3.7952 -1.1906 13 6 2.2305 -3.6445 -0.0005 14 6 3.1567 -3.9112 -0.9311 15 8 3.8500 -5.0124 -0.5926 16 6 3.4022 -5.5232 0.5719 17 6 3.7656 -6.6260 1.3347 18 6 3.1003 -6.8941 2.5131 19 17 3.5578 -8.2726 3.4639 20 6 2.0684 -6.0722 2.9464 21 6 1.6967 -4.9818 2.2101 22 6 2.3576 -4.6956 1.0163 23 1 -0.4851 0.8400 0.0004 24 1 -0.2764 -1.7042 -1.2950 25 1 1.0025 -2.6115 -2.1375 26 1 -1.0425 -3.8718 -2.0054 27 1 0.1234 -4.6169 -1.0830 28 1 3.3245 -3.3247 -1.8224 29 1 4.5666 -7.2716 1.0062 30 1 1.5567 -6.2953 3.8709 31 1 0.8938 -4.3453 2.5513 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259535918.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:07 Heat of formation + Delta-G solvation = 13.300436 kcal Electronic energy + Delta-G solvation = -17416.586854 eV Core-core repulsion = 14496.814379 eV Total energy + Delta-G solvation = -2919.772475 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.00333 -37.90413 -36.19840 -35.71076 -32.31211 -31.96684 -30.31413 -29.17886 -27.39346 -23.97682 -23.15593 -22.04410 -21.64825 -19.02655 -17.06915 -16.78441 -16.16151 -15.86205 -15.57606 -14.88982 -14.44334 -13.99978 -13.75349 -13.57996 -13.08007 -13.03623 -12.59168 -12.00954 -11.87767 -11.29201 -11.16469 -11.09202 -10.91375 -10.77234 -10.54755 -10.34698 -9.77126 -9.59875 -9.06404 -8.54964 -8.34849 -7.70686 -7.55276 -6.11838 -4.20948 1.08978 1.53377 2.04956 2.94039 3.25072 3.30616 3.33388 3.35152 3.90750 4.34035 4.86194 5.02249 5.14662 5.20341 5.34968 5.57955 5.68219 5.80275 6.06199 6.18434 6.26680 6.42740 6.56672 6.65333 6.81246 6.84217 7.06665 7.44787 7.61003 7.77747 7.83160 8.11095 8.29440 8.33801 8.82894 9.44824 10.92746 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.027160 B = 0.005140 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.675908 B = 5445.798495 C = 5582.922691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.517 4.517 8 H 0.058 0.942 9 C 0.111 3.889 10 H 0.047 0.953 11 C 0.068 3.932 12 N -0.852 5.852 13 C -0.112 4.112 14 C -0.027 4.027 15 O -0.199 6.199 16 C 0.054 3.946 17 C -0.106 4.106 18 C -0.017 4.017 19 Cl -0.073 7.073 20 C -0.139 4.139 21 C -0.042 4.042 22 C -0.115 4.115 23 H 0.264 0.736 24 H 0.109 0.891 25 H -0.004 1.004 26 H 0.321 0.679 27 H 0.321 0.679 28 H 0.205 0.795 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.077 -11.350 1.622 12.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.076 0.924 9 C 0.092 3.908 10 H 0.065 0.935 11 C -0.062 4.062 12 N -0.379 5.379 13 C -0.113 4.113 14 C -0.090 4.090 15 O -0.101 6.101 16 C 0.006 3.994 17 C -0.126 4.126 18 C -0.043 4.043 19 Cl -0.045 7.045 20 C -0.158 4.158 21 C -0.060 4.060 22 C -0.116 4.116 23 H 0.074 0.926 24 H 0.127 0.873 25 H 0.015 0.985 26 H 0.131 0.869 27 H 0.132 0.868 28 H 0.221 0.779 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.856 -11.110 2.218 11.968 hybrid contribution 1.013 0.654 -0.799 1.446 sum 4.869 -10.456 1.419 11.621 Atomic orbital electron populations 1.69862 1.05788 1.26912 1.49479 1.24974 0.94904 0.99138 0.94712 0.86617 0.79595 0.82863 0.78743 1.20205 1.21160 1.20176 1.21056 0.92898 0.89602 1.52001 0.92391 1.17363 0.89916 0.87803 0.95701 0.93508 1.22137 0.95664 0.92468 0.95891 1.58957 1.27231 1.05680 1.46018 1.22018 1.00134 0.97148 0.92025 1.23737 0.94831 0.88301 1.02151 1.83959 1.53833 1.38250 1.34085 1.19295 0.96198 0.96286 0.87624 1.19424 1.02685 0.96781 0.93668 1.20283 0.98806 0.91679 0.93574 1.98346 1.92108 1.42448 1.71565 1.20548 0.98036 0.95664 1.01546 1.20336 0.98236 0.95458 0.91962 1.20194 0.97634 0.96613 0.97172 0.92619 0.87298 0.98546 0.86857 0.86837 0.77891 0.84756 0.84819 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.89 11.29 55.43 0.63 -23.26 16 2 C 0.07 1.70 5.29 -17.82 -0.09 1.61 16 3 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.52 -13.33 8.42 -34.44 -0.29 -13.62 16 8 H 0.06 1.49 7.72 -52.49 -0.41 1.09 16 9 C 0.11 2.62 2.39 -92.92 -0.22 2.40 16 10 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 11 C 0.07 1.52 6.02 -3.82 -0.02 1.50 16 12 N -0.85 -16.47 9.62 -10.37 -0.10 -16.57 16 13 C -0.11 -2.30 4.05 -102.66 -0.42 -2.72 16 14 C -0.03 -0.50 11.34 29.23 0.33 -0.17 16 15 O -0.20 -3.58 10.58 3.85 0.04 -3.54 16 16 C 0.05 0.96 7.42 -38.48 -0.29 0.67 16 17 C -0.11 -1.59 9.84 -39.43 -0.39 -1.98 16 18 C -0.02 -0.24 6.31 -39.46 -0.25 -0.49 16 19 Cl -0.07 -0.89 28.93 -51.86 -1.50 -2.39 16 20 C -0.14 -2.00 9.75 -39.90 -0.39 -2.39 16 21 C -0.04 -0.70 10.05 -39.69 -0.40 -1.10 16 22 C -0.11 -2.17 6.38 -105.15 -0.67 -2.84 16 23 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 24 H 0.11 2.76 5.95 -51.93 -0.31 2.46 16 25 H 0.00 -0.08 7.89 -51.93 -0.41 -0.49 16 26 H 0.32 5.43 9.08 -39.29 -0.36 5.07 16 27 H 0.32 5.91 8.07 -39.29 -0.32 5.60 16 28 H 0.20 3.36 8.06 -52.48 -0.42 2.93 16 29 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.14 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 285.94 15.07 4.31 4.31 Total: -1.00 -26.94 285.94 -7.79 -34.73 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -3.05 Total: 10.54 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -3.09 Total: -19.13 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.53 Total: -39.84 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: 0.04 Total: -3.54 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.94 -7.79 -34.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259535918.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.031 kcal (2) G-P(sol) polarization free energy of solvation -26.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds