Wall clock time and date at job start Mon Mar 30 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.47017 * 54.99761 * 10 9 7 12 12 N 1.46904 * 109.47449 * 295.00105 * 10 9 7 13 13 C 1.50698 * 109.47721 * 174.99887 * 10 9 7 14 14 C 1.33999 * 124.92550 * 259.73039 * 13 10 9 15 15 C 1.46783 * 106.18441 * 179.89275 * 14 13 10 16 16 C 1.39446 * 134.35824 * 180.09226 * 15 14 13 17 17 C 1.36725 * 119.74077 * 180.28878 * 16 15 14 18 18 C 1.38742 * 120.42701 * 359.97438 * 17 16 15 19 19 C 1.37951 * 120.67069 * 359.97438 * 18 17 16 20 20 Cl 1.73604 * 120.09913 * 180.02562 * 19 18 17 21 21 C 1.39041 * 119.79372 * 0.02562 * 19 18 17 22 22 O 1.34443 * 124.92579 * 80.01856 * 13 10 9 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.00898 * 111.00551 * 176.04613 * 12 10 9 27 27 H 1.00898 * 110.99372 * 300.00401 * 12 10 9 28 28 H 1.07997 * 126.90923 * 359.97438 * 14 13 10 29 29 H 1.07999 * 120.12571 * 0.30710 * 16 15 14 30 30 H 1.08000 * 119.78550 * 180.02562 * 17 16 15 31 31 H 1.08002 * 119.66290 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8424 12 7 3.0083 -3.6540 -1.2547 13 6 1.4958 -4.9637 0.1244 14 6 1.3554 -5.6632 1.2587 15 6 0.5585 -6.8466 0.9136 16 6 0.0763 -7.9404 1.6316 17 6 -0.6532 -8.9036 0.9916 18 6 -0.9167 -8.7990 -0.3666 19 6 -0.4489 -7.7238 -1.0934 20 17 -0.7879 -7.6075 -2.7920 21 6 0.2948 -6.7336 -0.4612 22 8 0.8758 -5.5944 -0.8883 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 3.7159 -4.3732 -1.2524 27 1 2.3959 -3.7518 -2.0507 28 1 1.7483 -5.4070 2.2315 29 1 0.2779 -8.0263 2.6891 30 1 -1.0274 -9.7508 1.5470 31 1 -1.4945 -9.5668 -0.8596 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259550226.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:13 Heat of formation + Delta-G solvation = -7.273788 kcal Electronic energy + Delta-G solvation = -17055.365409 eV Core-core repulsion = 14134.700768 eV Total energy + Delta-G solvation = -2920.664641 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.57278 -39.22586 -37.51648 -37.17996 -34.56216 -33.54570 -31.30848 -30.53134 -30.01553 -26.35359 -24.22452 -23.69992 -22.50242 -21.58490 -18.70113 -18.53377 -17.85576 -17.32143 -16.81456 -16.71258 -16.35230 -15.71713 -15.27541 -14.80091 -14.41148 -14.20482 -14.03359 -13.82872 -13.23623 -13.12845 -12.84627 -12.63727 -12.53764 -12.38185 -12.28330 -12.03005 -11.71853 -11.31772 -10.87652 -10.53759 -9.77183 -9.63660 -9.13105 -8.14369 -6.22260 -0.27422 0.20789 0.98717 1.23181 1.44112 1.47622 1.55020 1.59719 2.46447 2.56019 3.19302 3.32150 3.61266 3.75515 3.93227 4.11487 4.19251 4.26799 4.41081 4.49197 4.66610 4.73913 4.99476 5.12176 5.28368 5.36098 5.36795 5.49675 5.63816 5.81660 5.98902 6.18821 6.33438 6.63911 6.91388 7.45081 8.97850 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.029103 B = 0.004614 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.869949 B = 6067.554139 C = 6418.826894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.005 4.005 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.509 4.509 8 H 0.070 0.930 9 C 0.041 3.959 10 C 0.184 3.816 11 H 0.117 0.883 12 N -0.823 5.823 13 C 0.003 3.997 14 C -0.213 4.213 15 C -0.131 4.131 16 C -0.069 4.069 17 C -0.115 4.115 18 C -0.081 4.081 19 C -0.046 4.046 20 Cl -0.069 7.069 21 C 0.019 3.981 22 O -0.202 6.202 23 H 0.261 0.739 24 H -0.001 1.001 25 H -0.015 1.015 26 H 0.345 0.655 27 H 0.340 0.660 28 H 0.180 0.820 29 H 0.162 0.838 30 H 0.182 0.818 31 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.175 -20.386 2.301 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.547 4.547 8 H 0.088 0.912 9 C 0.004 3.996 10 C 0.071 3.929 11 H 0.135 0.865 12 N -0.350 5.350 13 C -0.047 4.047 14 C -0.233 4.233 15 C -0.132 4.132 16 C -0.086 4.086 17 C -0.133 4.133 18 C -0.100 4.100 19 C -0.073 4.073 20 Cl -0.040 7.040 21 C -0.029 4.029 22 O -0.104 6.104 23 H 0.069 0.931 24 H 0.017 0.983 25 H 0.003 0.997 26 H 0.158 0.842 27 H 0.153 0.847 28 H 0.198 0.802 29 H 0.180 0.820 30 H 0.199 0.801 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.240 -19.413 2.063 19.524 hybrid contribution -0.376 0.304 -0.501 0.696 sum -0.136 -19.109 1.562 19.173 Atomic orbital electron populations 1.70114 1.07886 1.27582 1.52628 1.25950 0.95633 1.03298 0.95276 0.85482 0.78096 0.78153 0.79143 1.19587 1.21428 1.18875 1.21399 0.93724 0.90755 1.48797 0.91229 1.18993 0.93263 0.92461 0.94918 1.20450 0.92918 0.84733 0.94761 0.86543 1.58651 1.18084 1.55063 1.03231 1.24434 0.96903 0.96958 0.86432 1.22594 1.05792 0.95009 0.99901 1.20246 1.02331 0.98226 0.92413 1.20841 0.95540 0.90826 1.01431 1.21224 0.98524 1.00318 0.93256 1.21330 0.98641 0.95243 0.94746 1.20084 1.04381 0.96540 0.86259 1.98367 1.94116 1.98160 1.13326 1.19755 1.00338 0.88564 0.94215 1.83962 1.57715 1.31012 1.37739 0.93074 0.98284 0.99686 0.84151 0.84722 0.80247 0.82040 0.80076 0.80923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.23 13.29 21.45 0.28 -57.95 16 2 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 3 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.51 -28.63 8.84 25.60 0.23 -28.40 16 8 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 9 C 0.04 2.17 4.60 29.85 0.14 2.30 16 10 C 0.18 7.45 3.13 44.17 0.14 7.59 16 11 H 0.12 4.39 8.12 -2.38 -0.02 4.37 16 12 N -0.82 -30.81 8.93 -171.79 -1.53 -32.35 16 13 C 0.00 0.09 6.06 24.72 0.15 0.24 16 14 C -0.21 -6.88 10.99 23.54 0.26 -6.63 16 15 C -0.13 -3.90 6.40 -20.21 -0.13 -4.03 16 16 C -0.07 -1.41 10.05 22.21 0.22 -1.19 16 17 C -0.12 -1.84 9.98 22.04 0.22 -1.62 16 18 C -0.08 -1.57 9.80 22.32 0.22 -1.35 16 19 C -0.05 -1.27 6.33 22.39 0.14 -1.12 16 20 Cl -0.07 -1.88 28.97 -2.72 -0.08 -1.96 16 21 C 0.02 0.65 7.21 23.00 0.17 0.81 16 22 O -0.20 -7.87 10.40 -9.09 -0.09 -7.97 16 23 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 24 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 25 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 26 H 0.35 10.57 9.06 -89.70 -0.81 9.76 16 27 H 0.34 13.17 8.84 -89.70 -0.79 12.38 16 28 H 0.18 4.80 8.06 -2.91 -0.02 4.78 16 29 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 30 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 31 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -69.63 291.88 2.39 -67.24 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -0.43 Total: 19.18 kcal Atomic # 6 Polarization: -35.43 SS G_CDS: 2.21 Total: -33.21 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -1.25 Total: -90.30 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.09 Total: -7.97 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.08 Total: -1.96 kcal Total: -69.63 2.39 -67.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259550226.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.968 kcal (2) G-P(sol) polarization free energy of solvation -69.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds