Wall clock time and date at job start Mon Mar 30 2020 06:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99692 * 2 1 4 4 H 1.48505 * 109.47158 * 269.99959 * 3 2 1 5 5 H 1.48498 * 109.47175 * 29.99964 * 3 2 1 6 6 H 1.48501 * 109.47229 * 150.00237 * 3 2 1 7 7 C 1.37877 * 120.00316 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00046 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00091 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47189 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47342 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47231 * 180.02562 * 11 10 9 13 13 C 1.38800 * 119.69493 * 264.99614 * 12 11 10 14 14 C 1.37605 * 120.09340 * 179.97438 * 13 12 11 15 15 C 1.39382 * 120.14825 * 359.97438 * 14 13 12 16 16 S 1.76115 * 131.64748 * 180.02562 * 15 14 13 17 17 C 1.70644 * 90.83054 * 179.97438 * 16 15 14 18 18 N 1.27897 * 111.51495 * 0.02562 * 17 16 15 19 19 C 1.34695 * 117.84153 * 0.02562 * 18 17 16 20 20 C 1.37377 * 119.69998 * 84.97541 * 12 11 10 21 21 F 1.35093 * 119.87044 * 0.02562 * 20 12 11 22 22 H 0.96994 * 120.00769 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47030 * 59.99694 * 9 7 2 24 24 H 1.08998 * 109.46890 * 299.99920 * 9 7 2 25 25 H 1.09000 * 109.47390 * 59.99908 * 10 9 7 26 26 H 1.09004 * 109.47036 * 300.00218 * 10 9 7 27 27 H 1.09000 * 109.47106 * 59.99548 * 11 10 9 28 28 H 1.08998 * 109.46661 * 299.99868 * 11 10 9 29 29 H 1.07999 * 119.95565 * 359.97438 * 13 12 11 30 30 H 1.07998 * 119.92724 * 179.69903 * 14 13 12 31 31 H 1.07995 * 124.23808 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 -0.0014 11 6 5.5517 -2.6364 -0.0001 12 6 6.0540 -4.0571 -0.0022 13 6 6.3814 -4.6724 1.1982 14 6 6.8404 -5.9696 1.2059 15 6 6.9778 -6.6707 0.0091 16 16 7.5249 -8.3098 -0.3309 17 6 7.2856 -8.0693 -2.0033 18 7 6.8482 -6.8931 -2.2502 19 6 6.6526 -6.0630 -1.2076 20 6 6.1834 -4.7316 -1.1919 21 9 5.8605 -4.1184 -2.3515 22 1 -0.4851 0.8399 0.0004 23 1 3.8745 -0.6807 0.8905 24 1 3.8752 -0.6795 -0.8894 25 1 3.6587 -3.1493 -0.8920 26 1 3.6579 -3.1512 0.8879 27 1 5.9143 -2.1236 0.8908 28 1 5.9156 -2.1214 -0.8892 29 1 6.2758 -4.1323 2.1274 30 1 7.0990 -6.4441 2.1410 31 1 7.4799 -8.8164 -2.7585 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259563685.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:22 Heat of formation + Delta-G solvation = -5.768772 kcal Electronic energy + Delta-G solvation = -16770.092293 eV Core-core repulsion = 13863.909411 eV Total energy + Delta-G solvation = -2906.182882 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.81874 -40.42751 -37.57121 -34.64814 -32.51434 -30.63323 -30.11891 -27.33878 -25.27377 -23.75537 -22.45816 -20.98169 -20.08624 -18.90211 -17.33979 -16.85325 -16.60055 -15.85931 -15.55856 -14.98280 -14.62257 -14.39395 -14.16475 -13.95016 -13.19634 -12.99585 -12.53054 -12.37287 -12.16455 -11.72235 -11.56381 -11.39028 -11.00315 -10.75260 -10.10264 -9.95238 -9.91497 -9.73414 -9.62883 -9.18355 -8.86896 -8.51823 -8.09155 -6.02095 -4.00141 0.13842 0.82232 0.97565 1.41494 2.10510 3.32428 3.32698 3.39635 3.42689 3.60054 4.12548 4.47018 4.51268 4.62824 4.89224 4.95852 5.24940 5.31740 5.38807 5.62689 5.79260 5.85231 5.88616 6.09128 6.13929 6.51319 6.57184 6.63286 6.89575 7.29051 7.31114 7.43605 7.81178 8.56321 9.03061 9.60245 11.11519 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.040907 B = 0.003915 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.308036 B = 7150.193287 C = 7301.740741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.097 4.097 11 C -0.087 4.087 12 C -0.091 4.091 13 C -0.065 4.065 14 C -0.085 4.085 15 C -0.162 4.162 16 S 0.097 5.903 17 C 0.062 3.938 18 N -0.453 5.453 19 C 0.043 3.957 20 C 0.156 3.844 21 F -0.117 7.117 22 H 0.263 0.737 23 H 0.017 0.983 24 H 0.012 0.988 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.148 0.852 30 H 0.137 0.863 31 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.569 -15.896 1.732 24.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.134 4.134 11 C -0.124 4.124 12 C -0.094 4.094 13 C -0.086 4.086 14 C -0.108 4.108 15 C -0.281 4.281 16 S 0.350 5.650 17 C -0.244 4.244 18 N -0.165 5.165 19 C -0.077 4.077 20 C 0.133 3.867 21 F -0.095 7.095 22 H 0.072 0.928 23 H 0.035 0.965 24 H 0.031 0.969 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.166 0.834 30 H 0.155 0.845 31 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 18.654 -16.500 1.617 24.957 hybrid contribution -0.065 1.681 -0.472 1.747 sum 18.589 -14.819 1.145 23.800 Atomic orbital electron populations 1.69913 1.06326 1.26861 1.51267 1.25037 0.94728 0.99183 0.94591 0.86769 0.80328 0.83594 0.78538 1.20284 1.21427 1.18976 1.21149 0.89530 0.94471 1.50687 0.91086 1.19584 0.97178 0.91988 0.96333 1.21476 0.90085 1.00293 1.01571 1.20839 0.98722 0.89294 1.03527 1.20060 0.99658 0.98751 0.90969 1.21020 0.96126 0.93718 0.97760 1.20333 1.00834 0.94249 0.95398 1.23590 1.08186 0.98223 0.98056 1.83911 1.66158 1.09762 1.05162 1.28061 1.00398 0.96805 0.99099 1.66163 1.14167 1.02997 1.33134 1.19030 1.06158 0.95015 0.87513 1.16946 0.99773 0.87638 0.82313 1.91537 1.89561 1.82032 1.46392 0.92762 0.96493 0.96936 0.92598 0.92403 0.90199 0.90615 0.83406 0.84490 0.77808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -15.07 9.66 -34.44 -0.33 -15.41 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -1.92 5.13 -26.73 -0.14 -2.05 16 11 C -0.09 -1.36 5.08 -27.88 -0.14 -1.50 16 12 C -0.09 -1.30 5.12 -104.73 -0.54 -1.84 16 13 C -0.06 -0.74 9.66 -39.60 -0.38 -1.12 16 14 C -0.09 -0.90 10.06 -39.39 -0.40 -1.29 16 15 C -0.16 -1.96 6.55 -38.56 -0.25 -2.21 16 16 S 0.10 0.86 23.17 -107.50 -2.49 -1.63 16 17 C 0.06 0.60 12.10 51.12 0.62 1.22 16 18 N -0.45 -6.42 10.57 -12.94 -0.14 -6.56 16 19 C 0.04 0.64 6.98 -84.90 -0.59 0.05 16 20 C 0.16 2.49 7.29 -38.78 -0.28 2.21 16 21 F -0.12 -2.09 16.50 2.25 0.04 -2.05 16 22 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 23 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 24 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.08 1.10 8.05 -51.93 -0.42 0.68 16 28 H 0.08 1.21 7.74 -51.93 -0.40 0.80 16 29 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.21 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 286.89 15.07 4.32 4.32 Total: -1.00 -33.43 286.89 -8.10 -41.53 By element: Atomic # 1 Polarization: -1.48 SS G_CDS: -3.29 Total: -4.77 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -2.65 Total: -20.55 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.64 Total: -34.07 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.49 Total: -1.63 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.43 -8.10 -41.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259563685.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.761 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds