Wall clock time and date at job start Mon Mar 30 2020 06:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99692 * 2 1 4 4 H 1.48505 * 109.47158 * 269.99959 * 3 2 1 5 5 H 1.48498 * 109.47175 * 29.99964 * 3 2 1 6 6 H 1.48501 * 109.47229 * 150.00237 * 3 2 1 7 7 C 1.37877 * 120.00316 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00046 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00091 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47189 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47342 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47231 * 180.02562 * 11 10 9 13 13 C 1.38800 * 119.69493 * 264.99614 * 12 11 10 14 14 C 1.37605 * 120.09340 * 179.97438 * 13 12 11 15 15 C 1.39382 * 120.14825 * 359.97438 * 14 13 12 16 16 S 1.76115 * 131.64748 * 180.02562 * 15 14 13 17 17 C 1.70644 * 90.83054 * 179.97438 * 16 15 14 18 18 N 1.27897 * 111.51495 * 0.02562 * 17 16 15 19 19 C 1.34695 * 117.84153 * 0.02562 * 18 17 16 20 20 C 1.37377 * 119.69998 * 84.97541 * 12 11 10 21 21 F 1.35093 * 119.87044 * 0.02562 * 20 12 11 22 22 H 0.96994 * 120.00769 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47030 * 59.99694 * 9 7 2 24 24 H 1.08998 * 109.46890 * 299.99920 * 9 7 2 25 25 H 1.09000 * 109.47390 * 59.99908 * 10 9 7 26 26 H 1.09004 * 109.47036 * 300.00218 * 10 9 7 27 27 H 1.09000 * 109.47106 * 59.99548 * 11 10 9 28 28 H 1.08998 * 109.46661 * 299.99868 * 11 10 9 29 29 H 1.07999 * 119.95565 * 359.97438 * 13 12 11 30 30 H 1.07998 * 119.92724 * 179.69903 * 14 13 12 31 31 H 1.07995 * 124.23808 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 -0.0014 11 6 5.5517 -2.6364 -0.0001 12 6 6.0540 -4.0571 -0.0022 13 6 6.3814 -4.6724 1.1982 14 6 6.8404 -5.9696 1.2059 15 6 6.9778 -6.6707 0.0091 16 16 7.5249 -8.3098 -0.3309 17 6 7.2856 -8.0693 -2.0033 18 7 6.8482 -6.8931 -2.2502 19 6 6.6526 -6.0630 -1.2076 20 6 6.1834 -4.7316 -1.1919 21 9 5.8605 -4.1184 -2.3515 22 1 -0.4851 0.8399 0.0004 23 1 3.8745 -0.6807 0.8905 24 1 3.8752 -0.6795 -0.8894 25 1 3.6587 -3.1493 -0.8920 26 1 3.6579 -3.1512 0.8879 27 1 5.9143 -2.1236 0.8908 28 1 5.9156 -2.1214 -0.8892 29 1 6.2758 -4.1323 2.1274 30 1 7.0990 -6.4441 2.1410 31 1 7.4799 -8.8164 -2.7585 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259563685.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:21 Heat of formation + Delta-G solvation = -26.776493 kcal Electronic energy + Delta-G solvation = -16771.003256 eV Core-core repulsion = 13863.909411 eV Total energy + Delta-G solvation = -2907.093846 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.01063 -41.33654 -38.57419 -36.23696 -34.41551 -32.10202 -31.06770 -28.88232 -26.22065 -25.27373 -23.48649 -22.31802 -21.63969 -19.81550 -18.89260 -18.33765 -17.71907 -16.98962 -16.58217 -16.29123 -15.78794 -15.72057 -15.40365 -15.30983 -14.84864 -14.20441 -14.05268 -13.73129 -13.34216 -13.07078 -12.97827 -12.58387 -12.43396 -12.28011 -11.77931 -11.53447 -11.47613 -11.34627 -10.86547 -10.76521 -10.76336 -9.81968 -8.99655 -8.29220 -6.34007 -0.72481 -0.15436 0.19961 0.60009 1.25138 1.37368 1.39033 1.51421 2.36897 2.37256 2.75486 3.06265 3.17504 3.61735 3.70891 3.99812 4.09021 4.23660 4.36633 4.44335 4.53581 4.71251 4.85656 4.99439 5.01058 5.05842 5.08999 5.26261 5.49060 5.58324 5.61175 5.68134 6.28541 6.45986 6.74038 7.30630 8.88018 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.040907 B = 0.003915 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.308036 B = 7150.193287 C = 7301.740741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.238 1.238 7 C -0.536 4.536 8 H 0.026 0.974 9 C -0.011 4.011 10 C -0.088 4.088 11 C -0.076 4.076 12 C -0.097 4.097 13 C -0.068 4.068 14 C -0.070 4.070 15 C -0.186 4.186 16 S 0.172 5.828 17 C 0.066 3.934 18 N -0.507 5.507 19 C 0.022 3.978 20 C 0.111 3.889 21 F -0.143 7.143 22 H 0.266 0.734 23 H 0.033 0.967 24 H 0.015 0.985 25 H 0.029 0.971 26 H 0.058 0.942 27 H 0.108 0.892 28 H 0.068 0.932 29 H 0.178 0.822 30 H 0.176 0.824 31 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.430 -16.696 3.507 27.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.161 1.161 7 C -0.574 4.574 8 H 0.044 0.956 9 C -0.049 4.049 10 C -0.126 4.126 11 C -0.113 4.113 12 C -0.101 4.101 13 C -0.089 4.089 14 C -0.092 4.092 15 C -0.305 4.305 16 S 0.427 5.573 17 C -0.237 4.237 18 N -0.221 5.221 19 C -0.098 4.098 20 C 0.089 3.911 21 F -0.122 7.122 22 H 0.075 0.925 23 H 0.052 0.948 24 H 0.033 0.967 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.126 0.874 28 H 0.086 0.914 29 H 0.196 0.804 30 H 0.194 0.806 31 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 21.540 -17.337 3.401 27.859 hybrid contribution -0.971 1.666 -1.020 2.181 sum 20.569 -15.671 2.382 25.968 Atomic orbital electron populations 1.70079 1.08478 1.28233 1.52736 1.26096 0.95669 1.03803 0.93979 0.85593 0.79791 0.77747 0.79129 1.19604 1.20827 1.16080 1.21536 0.92439 0.92962 1.50503 0.95608 1.19547 0.93625 0.94747 0.96930 1.21284 0.93447 0.97471 1.00362 1.20653 0.95193 0.90935 1.04531 1.20042 1.00353 0.97974 0.91708 1.21363 0.95664 0.94395 0.97521 1.20809 0.98436 0.93691 0.96273 1.24090 1.08207 1.00363 0.97794 1.83635 1.64081 1.06442 1.03178 1.28809 0.97603 0.96106 1.01212 1.66196 1.17096 1.04700 1.34085 1.19204 1.06657 0.94940 0.89026 1.17414 1.02503 0.88994 0.82180 1.91452 1.90271 1.82614 1.47819 0.92489 0.94822 0.96664 0.95251 0.92310 0.87392 0.91371 0.80439 0.80629 0.74118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.49 13.96 21.45 0.30 -61.19 16 2 C 0.00 0.05 5.47 84.66 0.46 0.51 16 3 Si 0.95 44.82 27.47 68.60 1.88 46.70 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 7 C -0.54 -32.06 9.66 25.60 0.25 -31.81 16 8 H 0.03 1.71 7.99 -2.91 -0.02 1.68 16 9 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 10 C -0.09 -3.54 5.13 30.59 0.16 -3.38 16 11 C -0.08 -2.33 5.08 29.85 0.15 -2.18 16 12 C -0.10 -2.76 5.12 -19.93 -0.10 -2.86 16 13 C -0.07 -1.38 9.66 22.25 0.21 -1.17 16 14 C -0.07 -1.24 10.06 22.40 0.23 -1.02 16 15 C -0.19 -4.11 6.55 22.93 0.15 -3.96 16 16 S 0.17 2.50 23.17 -56.49 -1.31 1.19 16 17 C 0.07 1.16 12.10 130.82 1.58 2.75 16 18 N -0.51 -14.32 10.57 -194.67 -2.06 -16.38 16 19 C 0.02 0.65 6.98 39.81 0.28 0.93 16 20 C 0.11 3.70 7.29 22.79 0.17 3.86 16 21 F -0.14 -5.50 16.50 44.97 0.74 -4.76 16 22 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 23 H 0.03 1.49 7.20 -2.39 -0.02 1.47 16 24 H 0.01 0.71 7.57 -2.39 -0.02 0.69 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.11 2.67 8.05 -2.39 -0.02 2.65 16 28 H 0.07 2.18 7.74 -2.39 -0.02 2.16 16 29 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 31 H 0.24 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -77.36 286.89 4.30 -73.06 By element: Atomic # 1 Polarization: -0.97 SS G_CDS: 1.09 Total: 0.12 kcal Atomic # 6 Polarization: -42.40 SS G_CDS: 3.66 Total: -38.74 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -1.76 Total: -77.56 kcal Atomic # 9 Polarization: -5.50 SS G_CDS: 0.74 Total: -4.76 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -1.31 Total: 1.19 kcal Total: -77.36 4.30 -73.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259563685.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.279 kcal (2) G-P(sol) polarization free energy of solvation -77.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds