Wall clock time and date at job start Mon Mar 30 2020 06:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99428 * 2 1 4 4 H 1.48501 * 109.47173 * 240.00016 * 3 2 1 5 5 H 1.48497 * 109.47231 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46569 * 119.99902 * 3 2 1 7 7 C 1.37869 * 120.00494 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00025 * 187.27749 * 7 2 1 9 9 C 1.50707 * 119.99993 * 7.27093 * 7 2 1 10 10 H 1.09002 * 109.46989 * 330.48017 * 9 7 2 11 11 C 1.52996 * 109.47342 * 210.47813 * 9 7 2 12 12 N 1.46910 * 109.46938 * 65.30283 * 11 9 7 13 13 C 1.50698 * 109.46858 * 90.47531 * 9 7 2 14 14 C 1.33991 * 124.92829 * 239.99800 * 13 9 7 15 15 C 1.46779 * 106.18749 * 179.97438 * 14 13 9 16 16 C 1.39431 * 134.32690 * 180.02562 * 15 14 13 17 17 C 1.37824 * 119.59254 * 179.97438 * 16 15 14 18 18 Cl 1.73598 * 119.87582 * 179.97438 * 17 16 15 19 19 C 1.38864 * 120.24443 * 0.25127 * 17 16 15 20 20 C 1.37810 * 120.68145 * 359.48914 * 19 17 16 21 21 C 1.38933 * 119.97389 * 0.51068 * 20 19 17 22 22 O 1.34441 * 124.91965 * 59.96405 * 13 9 7 23 23 H 0.96996 * 120.00544 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47442 * 185.29704 * 11 9 7 25 25 H 1.09003 * 109.47364 * 305.30360 * 11 9 7 26 26 H 1.00894 * 111.00100 * 56.04530 * 12 11 9 27 27 H 1.00896 * 110.99715 * 180.02562 * 12 11 9 28 28 H 1.08000 * 126.90586 * 359.96755 * 14 13 9 29 29 H 1.08004 * 120.20552 * 359.95332 * 16 15 14 30 30 H 1.08001 * 119.66274 * 179.74967 * 19 17 16 31 31 H 1.08003 * 120.01647 * 180.25699 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0047 -1.1939 -0.0005 8 1 3.0780 -1.1977 0.1179 9 6 1.2603 -2.4938 -0.1663 10 1 0.2540 -2.3906 0.2396 11 6 2.0005 -3.6044 0.5817 12 7 1.9702 -3.3276 2.0242 13 6 1.1781 -2.8424 -1.6301 14 6 0.0394 -2.9994 -2.3186 15 6 0.4345 -3.3291 -3.6932 16 6 -0.2639 -3.6042 -4.8683 17 6 0.4325 -3.8833 -6.0244 18 17 -0.4296 -4.2275 -7.4914 19 6 1.8210 -3.8958 -6.0188 20 6 2.5221 -3.6203 -4.8648 21 6 1.8391 -3.3366 -3.6887 22 8 2.2369 -3.0403 -2.4347 23 1 -0.4851 0.8400 0.0004 24 1 1.5157 -4.5606 0.3850 25 1 3.0352 -3.6447 0.2412 26 1 1.0219 -3.2215 2.3521 27 1 2.4533 -4.0473 2.5406 28 1 -0.9669 -2.9030 -1.9384 29 1 -1.3439 -3.5990 -4.8724 30 1 2.3572 -4.1197 -6.9292 31 1 3.6021 -3.6290 -4.8736 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259584728.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:38 Heat of formation + Delta-G solvation = 11.808543 kcal Electronic energy + Delta-G solvation = -17251.756616 eV Core-core repulsion = 14331.919447 eV Total energy + Delta-G solvation = -2919.837169 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.79182 -37.82125 -36.09784 -35.28090 -32.50548 -32.17226 -29.99144 -29.78341 -27.24946 -24.40894 -22.70434 -22.06054 -20.81475 -19.96416 -17.05032 -16.91509 -16.17881 -15.61881 -15.39078 -14.76941 -14.40639 -13.87213 -13.75479 -13.28006 -12.97238 -12.91150 -12.53785 -12.16608 -12.05675 -11.52536 -11.15127 -10.96902 -10.87800 -10.87006 -10.67971 -10.52421 -9.89772 -9.48144 -9.32302 -8.60441 -8.09389 -7.84018 -7.46473 -6.18431 -4.18374 1.26290 1.51517 2.26280 3.14576 3.31397 3.33416 3.37609 3.44665 3.93030 4.36315 4.83888 4.99301 5.20172 5.35100 5.42519 5.53384 5.60973 5.92825 6.07250 6.09659 6.19486 6.33385 6.38283 6.51437 6.61932 6.77608 6.88798 7.16351 7.30283 7.77591 7.87072 7.93486 8.17211 8.20060 8.85753 9.43868 10.90112 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023270 B = 0.005368 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.985850 B = 5215.263996 C = 5700.576449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.488 4.488 8 H 0.064 0.936 9 C 0.096 3.904 10 H 0.093 0.907 11 C 0.077 3.923 12 N -0.830 5.830 13 C 0.121 3.879 14 C -0.256 4.256 15 C -0.100 4.100 16 C -0.075 4.075 17 C -0.054 4.054 18 Cl -0.083 7.083 19 C -0.110 4.110 20 C -0.091 4.091 21 C 0.039 3.961 22 O -0.184 6.184 23 H 0.265 0.735 24 H 0.000 1.000 25 H 0.062 0.938 26 H 0.337 0.663 27 H 0.324 0.676 28 H 0.151 0.849 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.519 -8.361 -7.609 11.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.525 4.525 8 H 0.082 0.918 9 C 0.077 3.923 10 H 0.110 0.890 11 C -0.054 4.054 12 N -0.358 5.358 13 C 0.071 3.929 14 C -0.275 4.275 15 C -0.102 4.102 16 C -0.093 4.093 17 C -0.081 4.081 18 Cl -0.054 7.054 19 C -0.129 4.129 20 C -0.109 4.109 21 C -0.010 4.010 22 O -0.084 6.084 23 H 0.075 0.925 24 H 0.019 0.981 25 H 0.080 0.920 26 H 0.149 0.851 27 H 0.135 0.865 28 H 0.169 0.831 29 H 0.149 0.851 30 H 0.154 0.846 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.964 -7.576 -7.837 10.942 hybrid contribution -0.453 0.161 -0.300 0.567 sum 0.511 -7.415 -8.137 11.020 Atomic orbital electron populations 1.69873 1.06036 1.27400 1.48908 1.25013 0.94912 0.99644 0.94045 0.86565 0.79686 0.82475 0.78883 1.20181 1.21253 1.19811 1.20751 0.93932 0.88754 1.49107 0.91813 1.17987 1.00348 0.93981 0.80018 0.88958 1.21805 1.00219 0.94851 0.88500 1.58427 1.21826 1.51806 1.03768 1.24330 0.82703 0.90199 0.95643 1.22044 0.99709 1.15197 0.90543 1.19958 0.93096 1.02454 0.94668 1.20247 0.99862 0.99711 0.89515 1.20487 0.92182 1.07978 0.87444 1.98330 1.77340 1.93923 1.35850 1.20526 0.91647 1.02816 0.97919 1.19737 0.99866 1.02996 0.88323 1.19787 0.92962 1.01963 0.86252 1.84089 1.36120 1.71809 1.16403 0.92499 0.98144 0.91998 0.85059 0.86541 0.83113 0.85121 0.84615 0.84746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.28 12.83 55.43 0.71 -23.57 16 2 C 0.07 1.80 5.45 -17.82 -0.10 1.71 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.49 -12.78 8.02 -34.44 -0.28 -13.06 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.10 2.22 2.41 -92.92 -0.22 1.99 16 10 H 0.09 2.29 7.28 -51.93 -0.38 1.91 16 11 C 0.08 1.53 6.14 -3.82 -0.02 1.50 16 12 N -0.83 -15.04 9.35 -10.37 -0.10 -15.13 16 13 C 0.12 2.73 5.72 -35.80 -0.20 2.52 16 14 C -0.26 -5.44 10.97 -37.62 -0.41 -5.86 16 15 C -0.10 -1.96 6.40 -105.16 -0.67 -2.64 16 16 C -0.07 -1.25 9.87 -39.29 -0.39 -1.63 16 17 C -0.05 -0.82 6.32 -39.50 -0.25 -1.07 16 18 Cl -0.08 -1.08 28.95 -51.86 -1.50 -2.58 16 19 C -0.11 -1.56 9.79 -39.51 -0.39 -1.94 16 20 C -0.09 -1.43 10.06 -39.48 -0.40 -1.82 16 21 C 0.04 0.75 7.41 -38.49 -0.29 0.47 16 22 O -0.18 -4.06 10.58 3.80 0.04 -4.02 16 23 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 24 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 25 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 26 H 0.34 5.86 8.99 -39.29 -0.35 5.51 16 27 H 0.32 4.77 9.08 -39.29 -0.36 4.42 16 28 H 0.15 3.06 8.06 -52.49 -0.42 2.64 16 29 H 0.13 1.95 8.06 -52.48 -0.42 1.53 16 30 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 291.13 15.07 4.39 4.39 Total: -1.00 -27.92 291.13 -8.27 -36.19 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -3.17 Total: 8.41 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -3.62 Total: -19.82 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.61 Total: -38.70 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: 0.04 Total: -4.02 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.50 Total: -2.58 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.92 -8.27 -36.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259584728.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.003 kcal (2) G-P(sol) polarization free energy of solvation -27.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds