Wall clock time and date at job start Mon Mar 30 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99428 * 2 1 4 4 H 1.48501 * 109.47173 * 240.00016 * 3 2 1 5 5 H 1.48497 * 109.47231 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46569 * 119.99902 * 3 2 1 7 7 C 1.37869 * 120.00494 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00025 * 187.27749 * 7 2 1 9 9 C 1.50707 * 119.99993 * 7.27093 * 7 2 1 10 10 H 1.09002 * 109.46989 * 330.48017 * 9 7 2 11 11 C 1.52996 * 109.47342 * 210.47813 * 9 7 2 12 12 N 1.46910 * 109.46938 * 65.30283 * 11 9 7 13 13 C 1.50698 * 109.46858 * 90.47531 * 9 7 2 14 14 C 1.33991 * 124.92829 * 239.99800 * 13 9 7 15 15 C 1.46779 * 106.18749 * 179.97438 * 14 13 9 16 16 C 1.39431 * 134.32690 * 180.02562 * 15 14 13 17 17 C 1.37824 * 119.59254 * 179.97438 * 16 15 14 18 18 Cl 1.73598 * 119.87582 * 179.97438 * 17 16 15 19 19 C 1.38864 * 120.24443 * 0.25127 * 17 16 15 20 20 C 1.37810 * 120.68145 * 359.48914 * 19 17 16 21 21 C 1.38933 * 119.97389 * 0.51068 * 20 19 17 22 22 O 1.34441 * 124.91965 * 59.96405 * 13 9 7 23 23 H 0.96996 * 120.00544 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47442 * 185.29704 * 11 9 7 25 25 H 1.09003 * 109.47364 * 305.30360 * 11 9 7 26 26 H 1.00894 * 111.00100 * 56.04530 * 12 11 9 27 27 H 1.00896 * 110.99715 * 180.02562 * 12 11 9 28 28 H 1.08000 * 126.90586 * 359.96755 * 14 13 9 29 29 H 1.08004 * 120.20552 * 359.95332 * 16 15 14 30 30 H 1.08001 * 119.66274 * 179.74967 * 19 17 16 31 31 H 1.08003 * 120.01647 * 180.25699 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0047 -1.1939 -0.0005 8 1 3.0780 -1.1977 0.1179 9 6 1.2603 -2.4938 -0.1663 10 1 0.2540 -2.3906 0.2396 11 6 2.0005 -3.6044 0.5817 12 7 1.9702 -3.3276 2.0242 13 6 1.1781 -2.8424 -1.6301 14 6 0.0394 -2.9994 -2.3186 15 6 0.4345 -3.3291 -3.6932 16 6 -0.2639 -3.6042 -4.8683 17 6 0.4325 -3.8833 -6.0244 18 17 -0.4296 -4.2275 -7.4914 19 6 1.8210 -3.8958 -6.0188 20 6 2.5221 -3.6203 -4.8648 21 6 1.8391 -3.3366 -3.6887 22 8 2.2369 -3.0403 -2.4347 23 1 -0.4851 0.8400 0.0004 24 1 1.5157 -4.5606 0.3850 25 1 3.0352 -3.6447 0.2412 26 1 1.0219 -3.2215 2.3521 27 1 2.4533 -4.0473 2.5406 28 1 -0.9669 -2.9030 -1.9384 29 1 -1.3439 -3.5990 -4.8724 30 1 2.3572 -4.1197 -6.9292 31 1 3.6021 -3.6290 -4.8736 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259584728.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:37 Heat of formation + Delta-G solvation = -4.777603 kcal Electronic energy + Delta-G solvation = -17252.475845 eV Core-core repulsion = 14331.919447 eV Total energy + Delta-G solvation = -2920.556398 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.31166 -39.12619 -37.33989 -36.89864 -34.31954 -33.70657 -31.57331 -31.12402 -28.85045 -26.27448 -24.09317 -23.49179 -22.34759 -21.59043 -18.86664 -18.34810 -17.64019 -17.03151 -17.01530 -16.59511 -15.89963 -15.36184 -15.14314 -14.76822 -14.54101 -14.19471 -14.05996 -13.90873 -13.42934 -13.20020 -12.71842 -12.67812 -12.54672 -12.34677 -12.17118 -11.81313 -11.67410 -11.21845 -10.94889 -10.62637 -9.42469 -9.31382 -9.00132 -8.18335 -6.23609 -0.06440 0.18205 1.07701 1.39558 1.41718 1.48787 1.59471 1.94412 2.42100 2.58416 3.12252 3.55287 3.72799 3.98441 4.03515 4.27607 4.28882 4.40092 4.51770 4.65217 4.76440 4.86424 4.92742 5.10069 5.17027 5.32939 5.38242 5.55525 5.62373 5.74017 6.11510 6.37508 6.50789 6.83102 6.86642 7.40588 8.88844 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023270 B = 0.005368 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.985850 B = 5215.263996 C = 5700.576449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.023 3.977 3 Si 0.947 3.053 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.496 4.496 8 H 0.051 0.949 9 C 0.097 3.903 10 H 0.069 0.931 11 C 0.087 3.913 12 N -0.839 5.839 13 C 0.094 3.906 14 C -0.260 4.260 15 C -0.124 4.124 16 C -0.080 4.080 17 C -0.052 4.052 18 Cl -0.058 7.058 19 C -0.091 4.091 20 C -0.091 4.091 21 C 0.014 3.986 22 O -0.201 6.201 23 H 0.264 0.736 24 H 0.017 0.983 25 H 0.055 0.945 26 H 0.341 0.659 27 H 0.344 0.656 28 H 0.149 0.851 29 H 0.143 0.857 30 H 0.176 0.824 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.256 -9.108 -9.710 13.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.177 4.177 3 Si 0.773 3.227 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.533 4.533 8 H 0.069 0.931 9 C 0.078 3.922 10 H 0.087 0.913 11 C -0.044 4.044 12 N -0.370 5.370 13 C 0.044 3.956 14 C -0.279 4.279 15 C -0.126 4.126 16 C -0.099 4.099 17 C -0.079 4.079 18 Cl -0.029 7.029 19 C -0.109 4.109 20 C -0.109 4.109 21 C -0.034 4.034 22 O -0.103 6.103 23 H 0.073 0.927 24 H 0.035 0.965 25 H 0.073 0.927 26 H 0.154 0.846 27 H 0.157 0.843 28 H 0.167 0.833 29 H 0.161 0.839 30 H 0.194 0.806 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.708 -8.341 -9.933 13.083 hybrid contribution -0.703 0.259 0.148 0.763 sum 1.005 -8.082 -9.785 12.731 Atomic orbital electron populations 1.69971 1.06941 1.27671 1.50488 1.25633 0.95612 1.02228 0.94270 0.85776 0.78655 0.79557 0.78741 1.20451 1.20852 1.19206 1.20925 0.93409 0.90316 1.48684 0.93108 1.17808 0.99033 0.94128 0.81192 0.91275 1.21598 0.99342 0.94377 0.89069 1.58346 1.22452 1.53018 1.03155 1.23958 0.83419 0.92661 0.95518 1.22178 0.99326 1.14495 0.91917 1.20039 0.93611 1.04190 0.94712 1.20429 1.00663 0.99537 0.89241 1.20670 0.92904 1.06468 0.87837 1.98348 1.76955 1.93612 1.33959 1.21021 0.91356 0.99903 0.98613 1.20187 1.01461 1.02050 0.87195 1.20364 0.93589 1.03147 0.86285 1.83999 1.36070 1.72624 1.17599 0.92737 0.96504 0.92684 0.84643 0.84256 0.83319 0.83891 0.80622 0.81950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.41 12.83 21.45 0.28 -51.14 16 2 C 0.02 1.24 5.45 84.65 0.46 1.70 16 3 Si 0.95 43.93 29.54 68.60 2.03 45.96 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.50 -26.64 8.02 25.60 0.21 -26.43 16 8 H 0.05 2.79 7.82 -2.92 -0.02 2.77 16 9 C 0.10 4.68 2.41 -12.29 -0.03 4.65 16 10 H 0.07 3.60 7.28 -2.39 -0.02 3.58 16 11 C 0.09 3.50 6.14 86.30 0.53 4.03 16 12 N -0.84 -30.40 9.35 -186.71 -1.75 -32.15 16 13 C 0.09 4.37 5.72 24.72 0.14 4.51 16 14 C -0.26 -11.42 10.97 23.54 0.26 -11.17 16 15 C -0.12 -4.84 6.40 -20.21 -0.13 -4.97 16 16 C -0.08 -2.55 9.87 22.46 0.22 -2.33 16 17 C -0.05 -1.40 6.32 22.32 0.14 -1.26 16 18 Cl -0.06 -1.29 28.95 -2.72 -0.08 -1.37 16 19 C -0.09 -2.20 9.79 22.32 0.22 -1.98 16 20 C -0.09 -2.61 10.06 22.34 0.22 -2.38 16 21 C 0.01 0.52 7.41 22.98 0.17 0.69 16 22 O -0.20 -9.06 10.58 -9.31 -0.10 -9.16 16 23 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 24 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.34 11.96 8.99 -89.70 -0.81 11.15 16 27 H 0.34 9.88 9.08 -89.70 -0.81 9.07 16 28 H 0.15 6.35 8.06 -2.91 -0.02 6.32 16 29 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 30 H 0.18 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -60.97 291.13 2.35 -58.62 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -0.44 Total: 24.17 kcal Atomic # 6 Polarization: -37.35 SS G_CDS: 2.41 Total: -34.94 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -1.47 Total: -83.28 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.10 Total: -9.16 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -60.97 2.35 -58.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259584728.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.841 kcal (2) G-P(sol) polarization free energy of solvation -60.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds