Wall clock time and date at job start Mon Mar 30 2020 06:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00055 * 2 1 4 4 H 1.48496 * 109.47017 * 239.99865 * 3 2 1 5 5 H 1.48503 * 109.47360 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47218 * 120.00160 * 3 2 1 7 7 C 1.37877 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99730 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00358 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.46927 * 300.00242 * 9 7 2 11 11 C 1.52998 * 109.46942 * 59.99723 * 9 7 2 12 12 N 1.46903 * 109.47198 * 185.00089 * 11 9 7 13 13 C 1.50700 * 109.47440 * 179.97438 * 9 7 2 14 14 C 1.33987 * 124.92156 * 120.00151 * 13 9 7 15 15 C 1.46791 * 106.18516 * 180.02562 * 14 13 9 16 16 C 1.39424 * 134.32805 * 179.97438 * 15 14 13 17 17 C 1.37826 * 119.58804 * 179.70073 * 16 15 14 18 18 Cl 1.73605 * 119.87530 * 180.30460 * 17 16 15 19 19 C 1.38856 * 120.24928 * 0.62271 * 17 16 15 20 20 C 1.37817 * 120.67874 * 359.40555 * 19 17 16 21 21 C 1.38926 * 119.97411 * 0.27577 * 20 19 17 22 22 O 1.34443 * 124.92221 * 300.02935 * 13 9 7 23 23 H 0.97005 * 119.99966 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47638 * 305.00434 * 11 9 7 25 25 H 1.09000 * 109.47067 * 65.00483 * 11 9 7 26 26 H 1.00900 * 110.99969 * 56.04625 * 12 11 9 27 27 H 1.00904 * 111.00284 * 180.02562 * 12 11 9 28 28 H 1.08000 * 126.91318 * 359.97438 * 14 13 9 29 29 H 1.08000 * 120.20493 * 0.04746 * 16 15 14 30 30 H 1.08002 * 119.66458 * 179.68822 * 19 17 16 31 31 H 1.07995 * 120.01112 * 180.30144 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 6 0.3708 -2.5799 -1.2494 12 7 -0.4525 -3.7950 -1.1906 13 6 2.2302 -3.6447 -0.0018 14 6 2.3118 -4.5851 0.9491 15 6 3.3944 -5.4880 0.5399 16 6 3.9629 -6.6378 1.0862 17 6 4.9945 -7.2677 0.4239 18 17 5.7026 -8.7044 1.0935 19 6 5.4740 -6.7537 -0.7736 20 6 4.9204 -5.6174 -1.3229 21 6 3.8754 -4.9712 -0.6745 22 8 3.1489 -3.8708 -0.9570 23 1 -0.4850 0.8401 0.0004 24 1 -0.2766 -1.7042 -1.2949 25 1 1.0022 -2.6115 -2.1374 26 1 -0.9998 -3.8203 -0.3433 27 1 -1.0430 -3.8716 -2.0052 28 1 1.7039 -4.6627 1.8384 29 1 3.5935 -7.0357 2.0198 30 1 6.2861 -7.2520 -1.2821 31 1 5.2986 -5.2297 -2.2573 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259584736.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:39 Heat of formation + Delta-G solvation = -5.185091 kcal Electronic energy + Delta-G solvation = -17215.749579 eV Core-core repulsion = 14295.175511 eV Total energy + Delta-G solvation = -2920.574068 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.33405 -39.12569 -37.36888 -36.95825 -34.21933 -33.70811 -31.60800 -31.11436 -28.95746 -26.02732 -24.18111 -23.57523 -22.39652 -21.55219 -18.76920 -18.34769 -17.73277 -17.14734 -16.91371 -16.54663 -15.95391 -15.32569 -15.13645 -14.73004 -14.53381 -14.18230 -13.98982 -13.91006 -13.42161 -13.22794 -12.89267 -12.60654 -12.34971 -12.16815 -12.09917 -11.95096 -11.67816 -11.49554 -10.94748 -10.63107 -9.44144 -9.38257 -8.99043 -8.20269 -6.37497 -0.05039 0.19766 1.09734 1.41732 1.42063 1.49577 1.60820 1.92977 2.38806 2.60166 3.05420 3.52325 3.74091 4.00246 4.03816 4.27612 4.30888 4.38375 4.65582 4.67251 4.85993 4.88717 5.08203 5.16143 5.24925 5.33566 5.46523 5.54371 5.66347 5.74855 6.01638 6.35033 6.46481 6.61276 6.81867 7.30775 8.80904 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.030789 B = 0.004713 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.184454 B = 5940.108494 C = 6325.401449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.028 3.972 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.541 4.541 8 H 0.048 0.952 9 C 0.117 3.883 10 H 0.045 0.955 11 C 0.076 3.924 12 N -0.852 5.852 13 C 0.106 3.894 14 C -0.253 4.253 15 C -0.121 4.121 16 C -0.075 4.075 17 C -0.053 4.053 18 Cl -0.057 7.057 19 C -0.089 4.089 20 C -0.094 4.094 21 C 0.015 3.985 22 O -0.205 6.205 23 H 0.268 0.732 24 H 0.054 0.946 25 H 0.034 0.966 26 H 0.338 0.662 27 H 0.339 0.661 28 H 0.162 0.838 29 H 0.149 0.851 30 H 0.175 0.825 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.936 -12.320 -0.462 14.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.172 4.172 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.066 0.934 9 C 0.098 3.902 10 H 0.063 0.937 11 C -0.055 4.055 12 N -0.381 5.381 13 C 0.058 3.942 14 C -0.272 4.272 15 C -0.123 4.123 16 C -0.094 4.094 17 C -0.080 4.080 18 Cl -0.028 7.028 19 C -0.107 4.107 20 C -0.112 4.112 21 C -0.032 4.032 22 O -0.107 6.107 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.150 0.850 27 H 0.151 0.849 28 H 0.180 0.820 29 H 0.166 0.834 30 H 0.192 0.808 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.581 -12.554 -0.647 14.679 hybrid contribution -0.709 1.592 0.257 1.762 sum 6.872 -10.961 -0.391 12.943 Atomic orbital electron populations 1.69922 1.06824 1.28000 1.49729 1.25600 0.95768 1.02069 0.93798 0.85613 0.78528 0.78768 0.78851 1.19843 1.20174 1.19762 1.21149 0.92909 0.90885 1.52938 0.93396 1.17595 0.89460 0.87326 0.95818 0.93687 1.21688 0.95802 0.91043 0.96980 1.58876 1.30362 1.41354 1.07487 1.23083 0.88909 0.96480 0.85732 1.22210 1.03739 0.97621 1.03630 1.19991 0.98444 0.97710 0.96110 1.20442 0.95221 0.93169 1.00536 1.20669 0.98372 0.92098 0.96830 1.98351 1.82934 1.36353 1.85201 1.21005 1.00755 0.94854 0.94134 1.20163 0.93994 0.95539 1.01519 1.20337 0.97131 0.88815 0.96953 1.83990 1.41119 1.39892 1.45662 0.92283 0.92834 0.94732 0.84985 0.84892 0.82050 0.83377 0.80772 0.82376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.48 11.29 21.45 0.24 -48.24 16 2 C 0.03 1.49 5.29 84.65 0.45 1.94 16 3 Si 0.96 42.01 29.54 68.60 2.03 44.04 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.54 -29.23 8.55 25.60 0.22 -29.01 16 8 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 9 C 0.12 5.76 2.31 -12.29 -0.03 5.73 16 10 H 0.05 2.32 8.08 -2.39 -0.02 2.30 16 11 C 0.08 3.51 6.00 86.30 0.52 4.03 16 12 N -0.85 -32.53 9.34 -186.72 -1.74 -34.27 16 13 C 0.11 4.84 5.40 24.72 0.13 4.98 16 14 C -0.25 -10.27 10.97 23.54 0.26 -10.02 16 15 C -0.12 -4.46 6.40 -20.21 -0.13 -4.59 16 16 C -0.08 -2.22 9.87 22.46 0.22 -1.99 16 17 C -0.05 -1.35 6.32 22.32 0.14 -1.21 16 18 Cl -0.06 -1.21 28.95 -2.72 -0.08 -1.28 16 19 C -0.09 -2.10 9.79 22.32 0.22 -1.88 16 20 C -0.09 -2.68 10.06 22.34 0.22 -2.45 16 21 C 0.01 0.57 7.41 22.98 0.17 0.74 16 22 O -0.21 -9.30 10.58 -9.30 -0.10 -9.40 16 23 H 0.27 13.63 8.31 -92.70 -0.77 12.86 16 24 H 0.05 2.71 5.95 -2.39 -0.01 2.69 16 25 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.34 12.24 8.99 -89.69 -0.81 11.43 16 27 H 0.34 11.17 9.08 -89.69 -0.81 10.35 16 28 H 0.16 5.89 8.06 -2.91 -0.02 5.86 16 29 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 30 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 31 H 0.16 3.69 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -58.47 287.91 2.30 -56.16 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: -0.44 Total: 26.74 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 2.39 Total: -33.75 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -1.50 Total: -82.51 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.10 Total: -9.40 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.28 kcal Total: -58.47 2.30 -56.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259584736.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.979 kcal (2) G-P(sol) polarization free energy of solvation -58.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds