Wall clock time and date at job start Mon Mar 30 2020 06:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.27899 * 124.23482 * 2 1 4 4 C 1.34714 * 117.84507 * 179.97438 * 3 2 1 5 5 C 1.40965 * 129.65992 * 180.02562 * 4 3 2 6 6 C 1.36158 * 120.46367 * 180.02562 * 5 4 3 7 7 C 1.50702 * 119.62777 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47118 * 99.99272 * 7 6 5 9 9 C 1.50702 * 109.47118 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99674 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00263 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99915 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00130 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47152 * 90.00193 * 13 11 9 15 15 H 1.48500 * 109.47364 * 210.00139 * 13 11 9 16 16 H 1.48503 * 109.47296 * 330.00532 * 13 11 9 17 17 C 1.38984 * 120.75135 * 0.02647 * 6 5 4 18 18 F 1.35100 * 119.99498 * 179.97438 * 17 6 5 19 19 C 1.37846 * 120.01234 * 359.95374 * 17 6 5 20 20 C 1.39333 * 119.93794 * 0.03197 * 19 17 6 21 21 S 1.70649 * 124.23728 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.46257 * 90.00503 * 1 2 3 23 23 H 1.08996 * 109.46915 * 209.99803 * 1 2 3 24 24 H 1.09001 * 109.47052 * 330.00577 * 1 2 3 25 25 H 1.08003 * 119.76571 * 359.72021 * 5 4 3 26 26 H 1.08997 * 109.47062 * 219.99937 * 7 6 5 27 27 H 1.09003 * 109.46791 * 339.99945 * 7 6 5 28 28 H 1.08997 * 109.47697 * 300.00276 * 8 7 6 29 29 H 1.09006 * 109.47200 * 60.00435 * 8 7 6 30 30 H 0.96997 * 120.00551 * 179.97438 * 12 11 9 31 31 H 1.08004 * 120.03444 * 180.02562 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2266 1.0574 0.0000 4 6 3.5654 0.9075 0.0005 5 6 4.5802 1.8858 0.0011 6 6 5.8917 1.5200 0.0011 7 6 6.9613 2.5816 0.0012 8 6 7.4996 2.7631 1.4218 9 6 8.5697 3.8243 1.4217 10 1 8.8385 4.3200 0.5006 11 6 9.2047 4.1632 2.5978 12 7 8.8770 3.5599 3.7195 13 14 10.5305 5.4790 2.5978 14 1 9.9105 6.8064 2.8404 15 1 11.5155 5.1893 3.6707 16 1 11.2195 5.4876 1.2823 17 6 6.2553 0.1785 -0.0001 18 9 7.5613 -0.1672 -0.0007 19 6 5.2836 -0.7992 -0.0003 20 6 3.9371 -0.4413 0.0000 21 16 2.4672 -1.4108 0.0006 22 1 -0.3632 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5137 25 1 4.3156 2.9329 -0.0033 26 1 7.7738 2.2789 -0.6594 27 1 6.5389 3.5230 -0.3502 28 1 6.6872 3.0658 2.0823 29 1 7.9221 1.8218 1.7733 30 1 9.3239 3.7979 4.5468 31 1 5.5658 -1.8417 -0.0008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259589257.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:46 Heat of formation + Delta-G solvation = -9.081568 kcal Electronic energy + Delta-G solvation = -16784.491271 eV Core-core repulsion = 13878.164735 eV Total energy + Delta-G solvation = -2906.326536 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.63372 -40.31046 -37.22644 -34.05162 -32.27232 -31.31027 -29.60719 -27.73134 -25.41241 -23.40291 -22.68988 -21.38456 -20.03588 -18.19479 -17.33808 -16.59645 -16.37154 -15.49519 -14.95808 -14.91987 -14.45309 -14.09808 -13.97468 -13.35550 -13.12003 -13.01490 -12.75892 -12.46645 -12.24643 -12.03937 -11.46520 -11.04583 -10.93588 -10.75946 -10.55085 -10.11946 -9.93132 -9.69829 -9.51448 -9.14829 -8.36801 -8.23268 -8.02843 -6.01150 -4.04541 0.37503 1.14665 1.15938 1.63676 2.26500 3.32109 3.38318 3.41603 3.65452 3.80427 4.42047 4.45082 4.56812 4.85022 5.10322 5.13866 5.19378 5.28321 5.34810 5.49493 5.61918 5.87340 5.97425 6.10553 6.23071 6.49711 6.61229 6.74571 6.98118 7.59228 7.63232 7.74067 7.96797 8.36473 9.01598 9.59598 11.10080 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.034946 B = 0.004263 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.032732 B = 6566.087846 C = 6975.966036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.082 3.918 3 N -0.460 5.460 4 C 0.073 3.927 5 C -0.041 4.041 6 C -0.076 4.076 7 C -0.080 4.080 8 C 0.028 3.972 9 C -0.523 4.523 10 H 0.057 0.943 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.893 3.107 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.132 3.868 18 F -0.121 7.121 19 C -0.117 4.117 20 C -0.167 4.167 21 S 0.088 5.912 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.144 0.856 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.019 0.981 29 H 0.020 0.980 30 H 0.261 0.739 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.917 -10.300 -8.432 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.203 4.203 3 N -0.174 5.174 4 C -0.046 4.046 5 C -0.062 4.062 6 C -0.080 4.080 7 C -0.117 4.117 8 C -0.009 4.009 9 C -0.561 4.561 10 H 0.076 0.924 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.721 3.279 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C 0.110 3.890 18 F -0.100 7.100 19 C -0.141 4.141 20 C -0.285 4.285 21 S 0.342 5.658 22 H 0.106 0.894 23 H 0.101 0.899 24 H 0.110 0.890 25 H 0.162 0.838 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.381 -10.848 -8.242 20.547 hybrid contribution 1.618 1.247 0.217 2.054 sum -13.763 -9.601 -8.025 18.601 Atomic orbital electron populations 1.20527 0.84960 1.04443 1.04072 1.26633 1.01642 0.90731 1.01313 1.66121 1.04197 1.31251 1.15800 1.19114 0.88992 0.91648 1.04849 1.20165 0.88932 0.98974 0.98080 1.20039 0.95950 0.94000 0.98001 1.20896 0.94052 0.94076 1.02671 1.19100 0.95900 0.97449 0.88423 1.21192 1.19971 1.20694 0.94215 0.92445 1.25016 0.97169 0.96553 0.95595 1.69966 1.42369 1.42030 0.98899 0.86571 0.81619 0.81922 0.77767 1.20627 1.21204 1.19802 1.17337 0.78225 0.92471 1.01003 1.91548 1.32555 1.92618 1.93234 1.20052 0.89145 0.99707 1.05187 1.23344 0.97929 0.96494 1.10724 1.83717 0.95697 1.10827 1.75544 0.89357 0.89882 0.89019 0.83785 0.91217 0.91195 0.96274 0.96150 0.92927 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.44 36.01 0.38 -0.22 16 2 C 0.08 0.99 7.28 -13.91 -0.10 0.89 16 3 N -0.46 -7.08 10.57 -9.09 -0.10 -7.18 16 4 C 0.07 1.21 7.00 -84.94 -0.59 0.61 16 5 C -0.04 -0.70 9.64 -39.30 -0.38 -1.08 16 6 C -0.08 -1.41 5.09 -105.09 -0.54 -1.94 16 7 C -0.08 -1.64 4.98 -27.88 -0.14 -1.78 16 8 C 0.03 0.74 4.95 -27.88 -0.14 0.60 16 9 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 10 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -27.06 13.29 55.43 0.74 -26.33 16 13 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 C 0.13 2.33 7.23 -39.45 -0.29 2.05 16 18 F -0.12 -2.27 16.64 2.25 0.04 -2.23 16 19 C -0.12 -1.78 10.05 -39.32 -0.40 -2.18 16 20 C -0.17 -2.53 6.56 -38.55 -0.25 -2.78 16 21 S 0.09 1.02 23.11 -107.50 -2.48 -1.46 16 22 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.14 2.30 7.99 -52.48 -0.42 1.88 16 26 H 0.07 1.41 7.93 -51.93 -0.41 1.00 16 27 H 0.07 1.34 7.95 -51.93 -0.41 0.93 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.14 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 290.93 15.07 4.38 4.38 Total: -1.00 -31.70 290.93 -8.62 -40.32 By element: Atomic # 1 Polarization: -1.51 SS G_CDS: -3.32 Total: -4.83 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -2.85 Total: -19.32 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.64 Total: -33.51 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.48 Total: -1.46 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.70 -8.62 -40.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259589257.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.236 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds