Wall clock time and date at job start Mon Mar 30 2020 06:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.27899 * 124.23482 * 2 1 4 4 C 1.34714 * 117.84507 * 179.97438 * 3 2 1 5 5 C 1.40965 * 129.65992 * 180.02562 * 4 3 2 6 6 C 1.36158 * 120.46367 * 180.02562 * 5 4 3 7 7 C 1.50702 * 119.62777 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47118 * 99.99272 * 7 6 5 9 9 C 1.50702 * 109.47118 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99674 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00263 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99915 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00130 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47152 * 90.00193 * 13 11 9 15 15 H 1.48500 * 109.47364 * 210.00139 * 13 11 9 16 16 H 1.48503 * 109.47296 * 330.00532 * 13 11 9 17 17 C 1.38984 * 120.75135 * 0.02647 * 6 5 4 18 18 F 1.35100 * 119.99498 * 179.97438 * 17 6 5 19 19 C 1.37846 * 120.01234 * 359.95374 * 17 6 5 20 20 C 1.39333 * 119.93794 * 0.03197 * 19 17 6 21 21 S 1.70649 * 124.23728 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.46257 * 90.00503 * 1 2 3 23 23 H 1.08996 * 109.46915 * 209.99803 * 1 2 3 24 24 H 1.09001 * 109.47052 * 330.00577 * 1 2 3 25 25 H 1.08003 * 119.76571 * 359.72021 * 5 4 3 26 26 H 1.08997 * 109.47062 * 219.99937 * 7 6 5 27 27 H 1.09003 * 109.46791 * 339.99945 * 7 6 5 28 28 H 1.08997 * 109.47697 * 300.00276 * 8 7 6 29 29 H 1.09006 * 109.47200 * 60.00435 * 8 7 6 30 30 H 0.96997 * 120.00551 * 179.97438 * 12 11 9 31 31 H 1.08004 * 120.03444 * 180.02562 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2266 1.0574 0.0000 4 6 3.5654 0.9075 0.0005 5 6 4.5802 1.8858 0.0011 6 6 5.8917 1.5200 0.0011 7 6 6.9613 2.5816 0.0012 8 6 7.4996 2.7631 1.4218 9 6 8.5697 3.8243 1.4217 10 1 8.8385 4.3200 0.5006 11 6 9.2047 4.1632 2.5978 12 7 8.8770 3.5599 3.7195 13 14 10.5305 5.4790 2.5978 14 1 9.9105 6.8064 2.8404 15 1 11.5155 5.1893 3.6707 16 1 11.2195 5.4876 1.2823 17 6 6.2553 0.1785 -0.0001 18 9 7.5613 -0.1672 -0.0007 19 6 5.2836 -0.7992 -0.0003 20 6 3.9371 -0.4413 0.0000 21 16 2.4672 -1.4108 0.0006 22 1 -0.3632 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5137 25 1 4.3156 2.9329 -0.0033 26 1 7.7738 2.2789 -0.6594 27 1 6.5389 3.5230 -0.3502 28 1 6.6872 3.0658 2.0823 29 1 7.9221 1.8218 1.7733 30 1 9.3239 3.7979 4.5468 31 1 5.5658 -1.8417 -0.0008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259589257.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:46 Heat of formation + Delta-G solvation = -27.368725 kcal Electronic energy + Delta-G solvation = -16785.284262 eV Core-core repulsion = 13878.164735 eV Total energy + Delta-G solvation = -2907.119527 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.01533 -41.48284 -38.47626 -35.85738 -34.05605 -32.28645 -31.23363 -28.92723 -27.18607 -24.80771 -23.90232 -23.03173 -21.37537 -19.38622 -18.65744 -18.42970 -17.87227 -16.86825 -16.49263 -16.17942 -16.00227 -15.29336 -15.09334 -14.77338 -14.56644 -14.34501 -13.99501 -13.88351 -13.59685 -13.24397 -13.03790 -12.83232 -12.58810 -12.20756 -11.99427 -11.83670 -11.69146 -11.27168 -11.02317 -10.72604 -10.57870 -9.49979 -9.16461 -8.21368 -6.33707 -0.76924 -0.12390 0.11544 0.58493 1.11727 1.40204 1.42001 1.53223 2.36445 2.42463 2.80371 3.11874 3.13980 3.39894 3.69603 3.96502 4.02796 4.25391 4.40324 4.56294 4.69150 4.69851 4.71562 4.77503 4.92918 5.02724 5.13405 5.17075 5.44433 5.54379 5.64866 5.79353 6.18399 6.53047 6.82225 7.35844 8.90678 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.034946 B = 0.004263 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.032732 B = 6566.087846 C = 6975.966036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.089 3.911 3 N -0.499 5.499 4 C 0.065 3.935 5 C -0.051 4.051 6 C -0.092 4.092 7 C -0.065 4.065 8 C 0.036 3.964 9 C -0.544 4.544 10 H 0.066 0.934 11 C 0.000 4.000 12 N -0.934 5.934 13 Si 0.968 3.032 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.261 1.261 17 C 0.103 3.897 18 F -0.135 7.135 19 C -0.100 4.100 20 C -0.192 4.192 21 S 0.160 5.840 22 H 0.111 0.889 23 H 0.111 0.889 24 H 0.094 0.906 25 H 0.146 0.854 26 H 0.069 0.931 27 H 0.080 0.920 28 H -0.009 1.009 29 H -0.011 1.011 30 H 0.264 0.736 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.597 -11.144 -9.280 22.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.195 4.195 3 N -0.214 5.214 4 C -0.054 4.054 5 C -0.072 4.072 6 C -0.096 4.096 7 C -0.103 4.103 8 C -0.001 4.001 9 C -0.582 4.582 10 H 0.084 0.916 11 C -0.198 4.198 12 N -0.574 5.574 13 Si 0.792 3.208 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.185 1.185 17 C 0.080 3.920 18 F -0.114 7.114 19 C -0.124 4.124 20 C -0.311 4.311 21 S 0.416 5.584 22 H 0.129 0.871 23 H 0.130 0.870 24 H 0.112 0.888 25 H 0.164 0.836 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.010 0.990 29 H 0.008 0.992 30 H 0.073 0.927 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -17.078 -11.709 -9.109 22.622 hybrid contribution 1.896 1.373 0.481 2.390 sum -15.182 -10.336 -8.628 20.292 Atomic orbital electron populations 1.20827 0.81513 1.05976 1.05943 1.27599 1.03662 0.90487 0.97740 1.66212 1.03621 1.32903 1.18704 1.19247 0.89750 0.92094 1.04325 1.20174 0.88878 0.99579 0.98523 1.19799 0.95775 0.93868 1.00154 1.20583 0.94888 0.95717 0.99079 1.18906 0.94624 0.95342 0.91226 1.21666 1.20565 1.21218 0.94753 0.91595 1.26011 0.99704 0.98996 0.95083 1.70112 1.43845 1.43804 0.99669 0.85399 0.78354 0.78783 0.78230 1.19590 1.20806 1.18541 1.17515 0.78265 0.92880 1.03325 1.91501 1.33545 1.92667 1.93681 1.20278 0.88752 1.00431 1.02896 1.23760 0.99474 0.97338 1.10528 1.83486 0.92375 1.08703 1.73869 0.87093 0.87050 0.88755 0.83603 0.91265 0.90122 0.99017 0.99225 0.92735 0.81427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.44 71.24 0.74 -0.16 16 2 C 0.09 1.89 7.28 88.68 0.65 2.54 16 3 N -0.50 -14.73 10.57 -182.50 -1.93 -16.65 16 4 C 0.07 2.14 7.00 39.77 0.28 2.42 16 5 C -0.05 -1.80 9.64 22.45 0.22 -1.59 16 6 C -0.09 -3.55 5.09 -20.17 -0.10 -3.65 16 7 C -0.07 -2.82 4.98 29.85 0.15 -2.67 16 8 C 0.04 1.98 4.95 29.85 0.15 2.13 16 9 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 10 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 11 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 12 N -0.93 -58.23 13.29 21.45 0.28 -57.95 16 13 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 17 C 0.10 3.73 7.23 22.36 0.16 3.89 16 18 F -0.14 -5.30 16.64 44.97 0.75 -4.55 16 19 C -0.10 -2.98 10.05 22.44 0.23 -2.76 16 20 C -0.19 -5.58 6.56 22.94 0.15 -5.43 16 21 S 0.16 3.19 23.11 -56.49 -1.31 1.89 16 22 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.15 4.89 7.99 -2.91 -0.02 4.87 16 26 H 0.07 2.93 7.93 -2.39 -0.02 2.91 16 27 H 0.08 3.22 7.95 -2.39 -0.02 3.20 16 28 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 30 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 31 H 0.17 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -70.75 290.93 4.28 -66.47 By element: Atomic # 1 Polarization: -1.08 SS G_CDS: 1.15 Total: 0.07 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: 3.31 Total: -36.16 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -1.64 Total: -74.60 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.75 Total: -4.55 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.31 Total: 1.89 kcal Total: -70.75 4.28 -66.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259589257.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.103 kcal (2) G-P(sol) polarization free energy of solvation -70.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds