Wall clock time and date at job start Mon Mar 30 2020 06:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35208 * 126.68769 * 2 1 4 4 C 1.42080 * 103.95727 * 180.02562 * 3 2 1 5 5 N 1.39230 * 126.90276 * 180.02562 * 4 3 2 6 6 C 1.38756 * 120.00263 * 185.19169 * 5 4 3 7 7 N 1.29674 * 124.94898 * 174.67404 * 6 5 4 8 8 C 1.32072 * 116.88033 * 179.97438 * 7 6 5 9 9 C 1.50695 * 122.70946 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47508 * 304.97437 * 9 8 7 11 11 H 1.08002 * 119.99721 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00272 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99830 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99873 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47215 * 89.99688 * 14 12 10 16 16 H 1.48498 * 109.46795 * 209.99662 * 14 12 10 17 17 H 1.48496 * 109.46781 * 329.99686 * 14 12 10 18 18 C 1.33365 * 114.57614 * 359.97438 * 8 7 6 19 19 S 1.70969 * 124.94592 * 354.61353 * 6 5 4 20 20 N 1.30795 * 106.19634 * 0.25916 * 4 3 2 21 21 O 1.20911 * 111.45197 * 359.54084 * 20 4 3 22 22 H 1.08997 * 109.47326 * 89.99621 * 1 2 3 23 23 H 1.08996 * 109.47598 * 210.00304 * 1 2 3 24 24 H 1.09001 * 109.46912 * 330.00378 * 1 2 3 25 25 H 1.08001 * 128.02252 * 359.97438 * 3 2 1 26 26 H 0.96999 * 120.00176 * 5.18093 * 5 4 3 27 27 H 1.09000 * 109.47667 * 64.97460 * 9 8 7 28 28 H 1.09006 * 109.47090 * 184.97366 * 9 8 7 29 29 H 0.97005 * 119.99593 * 180.02562 * 13 12 10 30 30 H 1.08008 * 125.95644 * 179.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3148 1.0842 0.0000 4 6 3.6253 0.5352 -0.0006 5 7 4.8266 1.2391 -0.0004 6 6 6.0302 0.5574 -0.1098 7 7 7.1943 1.1182 -0.2182 8 6 8.2380 0.3144 -0.3121 9 6 9.6498 0.8247 -0.4426 10 6 9.7395 1.7587 -1.6219 11 1 8.8619 1.9619 -2.2176 12 6 10.9419 2.3536 -1.9404 13 7 11.0202 3.1682 -2.9699 14 14 12.4600 2.0014 -0.9104 15 1 13.1764 0.8273 -1.4700 16 1 13.3571 3.1846 -0.9305 17 1 12.0530 1.7125 0.4882 18 6 7.9414 -0.9855 -0.2810 19 16 6.1944 -1.1443 -0.1198 20 7 3.4764 -0.7642 -0.0066 21 8 2.3081 -1.0755 -0.0006 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 2.0300 2.1260 -0.0004 26 1 4.8221 2.2061 0.0762 27 1 9.9286 1.3588 0.4658 28 1 10.3276 -0.0157 -0.5924 29 1 11.8662 3.5865 -3.1941 30 1 8.6490 -1.7991 -0.3443 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259592105.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:54 Heat of formation + Delta-G solvation = 115.594681 kcal Electronic energy + Delta-G solvation = -16695.862230 eV Core-core repulsion = 13814.862024 eV Total energy + Delta-G solvation = -2881.000207 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.97757 -39.31758 -36.84311 -33.93439 -33.06707 -32.04402 -30.17322 -28.17684 -27.65898 -24.26383 -23.59904 -22.58118 -20.75911 -19.50678 -17.79247 -17.43552 -17.38242 -16.74482 -16.14270 -15.72462 -14.59290 -14.22674 -14.01783 -13.89081 -13.59831 -13.40861 -12.79914 -12.60923 -12.47509 -12.09402 -11.75008 -11.47667 -11.05843 -10.64054 -10.06821 -9.90470 -9.67538 -9.45438 -9.24632 -9.01825 -8.54663 -8.45180 -7.43438 -6.00128 -3.97534 1.21772 1.39346 1.60942 2.17381 2.31273 2.77125 3.01986 3.32537 3.40042 3.42739 3.66797 4.05567 4.46691 4.58165 4.74832 4.90357 5.03325 5.24044 5.27704 5.34927 5.47007 5.67725 5.95794 6.23975 6.61741 6.77800 6.92492 7.15628 7.24275 7.71801 8.24378 8.48364 8.62618 9.07806 9.59198 11.13361 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.046236 B = 0.004138 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.449051 B = 6764.837045 C = 7169.405063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.009 4.009 3 C -0.253 4.253 4 C 0.270 3.730 5 N -0.590 5.590 6 C 0.263 3.737 7 N -0.494 5.494 8 C 0.151 3.849 9 C 0.049 3.951 10 C -0.502 4.502 11 H 0.075 0.925 12 C 0.067 3.933 13 N -0.902 5.902 14 Si 0.877 3.123 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.265 1.265 18 C -0.319 4.319 19 S 0.137 5.863 20 N -0.393 5.393 21 O 0.095 5.905 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.175 0.825 26 H 0.433 0.567 27 H 0.038 0.962 28 H 0.033 0.967 29 H 0.263 0.737 30 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.947 -7.048 7.856 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 C -0.277 4.277 4 C 0.018 3.982 5 N -0.229 5.229 6 C -0.106 4.106 7 N -0.216 5.216 8 C 0.021 3.979 9 C 0.009 3.991 10 C -0.541 4.541 11 H 0.094 0.906 12 C -0.134 4.134 13 N -0.541 5.541 14 Si 0.704 3.296 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.189 1.189 18 C -0.459 4.459 19 S 0.384 5.616 20 N -0.114 5.114 21 O 0.039 5.961 22 H 0.108 0.892 23 H 0.104 0.896 24 H 0.110 0.890 25 H 0.193 0.807 26 H 0.274 0.726 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -20.737 -8.327 7.806 23.671 hybrid contribution 1.490 1.646 0.268 2.236 sum -19.247 -6.681 8.074 21.916 Atomic orbital electron populations 1.20360 0.83822 1.04734 1.04283 1.24273 0.96360 0.85965 1.00739 1.21963 0.89152 1.01498 1.15084 1.20379 0.87131 0.89376 1.01273 1.39922 0.97798 1.08699 1.76503 1.23421 0.89439 0.94066 1.03686 1.66148 0.96082 1.38387 1.21023 1.20301 0.95888 0.87405 0.94322 1.18460 0.84891 0.96858 0.98841 1.20877 0.97170 1.25174 1.10867 0.90639 1.24976 0.98622 0.94794 0.95018 1.69903 1.26064 1.30684 1.27462 0.86826 0.83242 0.78020 0.81554 1.20147 1.21234 1.18932 1.26745 0.97454 1.01067 1.20596 1.84121 1.02841 1.02858 1.71741 1.73956 0.96987 1.12815 1.27641 1.84842 1.10327 1.32003 1.68969 0.89192 0.89647 0.88973 0.80727 0.72630 0.94388 0.94889 0.92710 0.81143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.45 36.01 0.38 0.08 16 2 C -0.01 -0.08 7.47 -35.39 -0.26 -0.34 16 3 C -0.25 -2.48 11.11 -39.19 -0.44 -2.91 16 4 C 0.27 3.76 7.93 -155.01 -1.23 2.53 16 5 N -0.59 -9.24 5.57 -13.20 -0.07 -9.31 16 6 C 0.26 5.11 8.20 -87.55 -0.72 4.39 16 7 N -0.49 -11.35 10.44 -11.33 -0.12 -11.47 16 8 C 0.15 3.52 6.02 -84.19 -0.51 3.01 16 9 C 0.05 1.25 4.53 -29.04 -0.13 1.12 16 10 C -0.50 -14.97 9.55 -34.44 -0.33 -15.30 16 11 H 0.08 2.50 7.98 -52.49 -0.42 2.08 16 12 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 13 N -0.90 -28.43 13.96 55.43 0.77 -27.65 16 14 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 18 C -0.32 -6.32 11.04 29.03 0.32 -6.00 16 19 S 0.14 2.46 20.53 -107.50 -2.21 0.25 16 20 N -0.39 -5.79 9.51 31.17 0.30 -5.49 16 21 O 0.09 1.13 11.19 17.01 0.19 1.33 16 22 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 23 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 26 H 0.43 5.83 8.95 -40.82 -0.37 5.47 16 27 H 0.04 0.97 7.20 -51.93 -0.37 0.59 16 28 H 0.03 0.78 7.45 -51.93 -0.39 0.40 16 29 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 30 H 0.17 2.92 8.06 -52.48 -0.42 2.50 16 LS Contribution 281.61 15.07 4.24 4.24 Total: -1.00 -35.33 281.61 -7.40 -42.74 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -2.83 Total: -0.24 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -3.02 Total: -11.53 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.88 Total: -53.92 kcal Atomic # 8 Polarization: 1.13 SS G_CDS: 0.19 Total: 1.33 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -2.21 Total: 0.25 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -35.33 -7.40 -42.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592105.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.333 kcal (2) G-P(sol) polarization free energy of solvation -35.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds