Wall clock time and date at job start Mon Mar 30 2020 06:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35208 * 126.68769 * 2 1 4 4 C 1.42080 * 103.95727 * 180.02562 * 3 2 1 5 5 N 1.39230 * 126.90276 * 180.02562 * 4 3 2 6 6 C 1.38756 * 120.00263 * 185.19169 * 5 4 3 7 7 N 1.29674 * 124.94898 * 174.67404 * 6 5 4 8 8 C 1.32072 * 116.88033 * 179.97438 * 7 6 5 9 9 C 1.50695 * 122.70946 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47508 * 304.97437 * 9 8 7 11 11 H 1.08002 * 119.99721 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00272 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99830 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99873 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47215 * 89.99688 * 14 12 10 16 16 H 1.48498 * 109.46795 * 209.99662 * 14 12 10 17 17 H 1.48496 * 109.46781 * 329.99686 * 14 12 10 18 18 C 1.33365 * 114.57614 * 359.97438 * 8 7 6 19 19 S 1.70969 * 124.94592 * 354.61353 * 6 5 4 20 20 N 1.30795 * 106.19634 * 0.25916 * 4 3 2 21 21 O 1.20911 * 111.45197 * 359.54084 * 20 4 3 22 22 H 1.08997 * 109.47326 * 89.99621 * 1 2 3 23 23 H 1.08996 * 109.47598 * 210.00304 * 1 2 3 24 24 H 1.09001 * 109.46912 * 330.00378 * 1 2 3 25 25 H 1.08001 * 128.02252 * 359.97438 * 3 2 1 26 26 H 0.96999 * 120.00176 * 5.18093 * 5 4 3 27 27 H 1.09000 * 109.47667 * 64.97460 * 9 8 7 28 28 H 1.09006 * 109.47090 * 184.97366 * 9 8 7 29 29 H 0.97005 * 119.99593 * 180.02562 * 13 12 10 30 30 H 1.08008 * 125.95644 * 179.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3148 1.0842 0.0000 4 6 3.6253 0.5352 -0.0006 5 7 4.8266 1.2391 -0.0004 6 6 6.0302 0.5574 -0.1098 7 7 7.1943 1.1182 -0.2182 8 6 8.2380 0.3144 -0.3121 9 6 9.6498 0.8247 -0.4426 10 6 9.7395 1.7587 -1.6219 11 1 8.8619 1.9619 -2.2176 12 6 10.9419 2.3536 -1.9404 13 7 11.0202 3.1682 -2.9699 14 14 12.4600 2.0014 -0.9104 15 1 13.1764 0.8273 -1.4700 16 1 13.3571 3.1846 -0.9305 17 1 12.0530 1.7125 0.4882 18 6 7.9414 -0.9855 -0.2810 19 16 6.1944 -1.1443 -0.1198 20 7 3.4764 -0.7642 -0.0066 21 8 2.3081 -1.0755 -0.0006 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 2.0300 2.1260 -0.0004 26 1 4.8221 2.2061 0.0762 27 1 9.9286 1.3588 0.4658 28 1 10.3276 -0.0157 -0.5924 29 1 11.8662 3.5865 -3.1941 30 1 8.6490 -1.7991 -0.3443 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259592105.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:54 Heat of formation + Delta-G solvation = 91.846282 kcal Electronic energy + Delta-G solvation = -16696.892038 eV Core-core repulsion = 13814.862024 eV Total energy + Delta-G solvation = -2882.030014 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.92733 -40.87008 -38.08040 -35.19707 -34.59977 -33.36396 -31.89780 -29.53384 -28.67238 -25.85632 -24.57086 -24.41325 -21.89576 -20.98234 -19.05476 -18.76959 -18.67159 -18.40047 -17.38815 -17.04557 -16.39575 -15.99098 -15.21509 -14.80961 -14.49635 -14.40113 -14.15824 -13.92040 -13.80023 -13.51818 -13.23507 -12.97801 -12.50884 -12.23402 -11.91660 -11.62638 -11.60526 -10.81406 -10.75220 -10.59073 -10.39496 -9.93113 -8.84895 -8.28303 -6.32900 -0.15374 0.17213 0.52521 0.74679 1.25773 1.37290 1.40035 1.50336 1.52974 2.05012 2.31532 2.36957 3.05379 3.13090 3.63303 3.92645 4.00414 4.35573 4.44329 4.60689 4.80165 4.81438 4.89760 4.90207 5.17858 5.19208 5.29304 5.47861 5.58057 5.94633 6.27019 6.70220 6.99051 7.28219 7.34278 8.89198 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.046236 B = 0.004138 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.449051 B = 6764.837045 C = 7169.405063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.007 3.993 3 C -0.253 4.253 4 C 0.242 3.758 5 N -0.587 5.587 6 C 0.255 3.745 7 N -0.543 5.543 8 C 0.113 3.887 9 C 0.055 3.945 10 C -0.513 4.513 11 H 0.021 0.979 12 C 0.003 3.997 13 N -0.953 5.953 14 Si 0.957 3.043 15 H -0.258 1.258 16 H -0.283 1.283 17 H -0.245 1.245 18 C -0.317 4.317 19 S 0.193 5.807 20 N -0.425 5.425 21 O 0.090 5.910 22 H 0.106 0.894 23 H 0.098 0.902 24 H 0.115 0.885 25 H 0.205 0.795 26 H 0.439 0.561 27 H 0.036 0.964 28 H 0.053 0.947 29 H 0.267 0.733 30 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.370 -8.401 9.302 25.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.057 4.057 3 C -0.277 4.277 4 C -0.008 4.008 5 N -0.228 5.228 6 C -0.114 4.114 7 N -0.267 5.267 8 C -0.018 4.018 9 C 0.015 3.985 10 C -0.552 4.552 11 H 0.039 0.961 12 C -0.193 4.193 13 N -0.594 5.594 14 Si 0.779 3.221 15 H -0.183 1.183 16 H -0.208 1.208 17 H -0.169 1.169 18 C -0.457 4.457 19 S 0.441 5.559 20 N -0.146 5.146 21 O 0.033 5.967 22 H 0.124 0.876 23 H 0.117 0.883 24 H 0.134 0.866 25 H 0.222 0.778 26 H 0.281 0.719 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -22.217 -9.691 9.263 25.948 hybrid contribution 1.603 2.042 -0.235 2.606 sum -20.614 -7.649 9.028 23.769 Atomic orbital electron populations 1.20659 0.80010 1.06556 1.05805 1.25157 0.98080 0.84423 0.98075 1.22370 0.87141 1.03322 1.14852 1.20820 0.87588 0.89879 1.02554 1.39985 0.97392 1.09129 1.76256 1.23732 0.89684 0.95418 1.02574 1.66064 0.97241 1.39881 1.23485 1.20107 0.95289 0.88855 0.97500 1.18293 0.87330 0.96376 0.96478 1.21042 0.95593 1.26543 1.12004 0.96053 1.26036 1.02654 0.94216 0.96379 1.70075 1.27394 1.32186 1.29699 0.85571 0.77897 0.78392 0.80276 1.18306 1.20850 1.16879 1.27058 0.99680 1.00549 1.18382 1.83900 1.00447 1.00986 1.70595 1.73870 0.98674 1.13525 1.28519 1.84782 1.09883 1.33167 1.68836 0.87569 0.88308 0.86644 0.77815 0.71902 0.94616 0.92908 0.92377 0.78604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.45 71.24 0.74 0.46 16 2 C 0.01 0.10 7.47 24.99 0.19 0.28 16 3 C -0.25 -4.40 11.11 22.52 0.25 -4.15 16 4 C 0.24 6.53 7.93 134.19 1.06 7.59 16 5 N -0.59 -18.55 5.57 -196.70 -1.10 -19.65 16 6 C 0.26 10.07 8.20 179.27 1.47 11.54 16 7 N -0.54 -25.78 10.44 -189.76 -1.98 -27.76 16 8 C 0.11 5.33 6.02 41.42 0.25 5.58 16 9 C 0.05 2.81 4.53 29.10 0.13 2.94 16 10 C -0.51 -31.80 9.55 25.60 0.24 -31.56 16 11 H 0.02 1.50 7.98 -2.91 -0.02 1.47 16 12 C 0.00 0.21 5.47 84.66 0.46 0.67 16 13 N -0.95 -62.08 13.96 21.45 0.30 -61.78 16 14 Si 0.96 45.08 27.47 68.60 1.88 46.97 16 15 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 16 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 17 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 18 C -0.32 -12.33 11.04 66.72 0.74 -11.59 16 19 S 0.19 6.77 20.53 -56.49 -1.16 5.61 16 20 N -0.43 -12.11 9.51 -56.35 -0.54 -12.64 16 21 O 0.09 2.00 11.19 71.03 0.79 2.80 16 22 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 23 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 24 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 25 H 0.20 2.14 8.06 -2.91 -0.02 2.12 16 26 H 0.44 12.12 8.95 -92.71 -0.83 11.29 16 27 H 0.04 1.81 7.20 -2.39 -0.02 1.79 16 28 H 0.05 2.45 7.45 -2.38 -0.02 2.43 16 29 H 0.27 16.09 8.31 -92.70 -0.77 15.32 16 30 H 0.20 6.33 8.06 -2.91 -0.02 6.31 16 Total: -1.00 -80.84 281.61 4.05 -76.79 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 0.30 Total: 7.90 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: 5.54 Total: -18.23 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -3.31 Total: -121.83 kcal Atomic # 8 Polarization: 2.00 SS G_CDS: 0.79 Total: 2.80 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.97 kcal Atomic # 16 Polarization: 6.77 SS G_CDS: -1.16 Total: 5.61 kcal Total: -80.84 4.05 -76.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592105.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.635 kcal (2) G-P(sol) polarization free energy of solvation -80.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds