Wall clock time and date at job start Mon Mar 30 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00031 * 2 1 4 4 H 1.48505 * 109.46918 * 269.99638 * 3 2 1 5 5 H 1.48498 * 109.47130 * 29.99764 * 3 2 1 6 6 H 1.48505 * 109.47035 * 150.00028 * 3 2 1 7 7 C 1.37877 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00173 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00168 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47562 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.46492 * 55.00256 * 10 9 7 12 12 N 1.46896 * 109.47136 * 295.00569 * 10 9 7 13 13 C 1.50700 * 109.47171 * 175.00259 * 10 9 7 14 14 C 1.33987 * 124.92156 * 260.00366 * 13 10 9 15 15 C 1.46791 * 106.18516 * 180.02562 * 14 13 10 16 16 C 1.39424 * 134.32805 * 179.97438 * 15 14 13 17 17 C 1.37826 * 119.58804 * 179.70073 * 16 15 14 18 18 Cl 1.73605 * 119.87530 * 180.30460 * 17 16 15 19 19 C 1.38856 * 120.24928 * 0.62271 * 17 16 15 20 20 C 1.37817 * 120.67874 * 359.40555 * 19 17 16 21 21 C 1.38926 * 119.97411 * 0.27577 * 20 19 17 22 22 O 1.34443 * 124.92221 * 80.03150 * 13 10 9 23 23 H 0.97000 * 119.99878 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46565 * 60.00104 * 9 7 2 25 25 H 1.08995 * 109.47177 * 300.00620 * 9 7 2 26 26 H 1.00902 * 111.00325 * 176.04147 * 12 10 9 27 27 H 1.00904 * 111.00234 * 299.99897 * 12 10 9 28 28 H 1.08000 * 126.91318 * 359.97438 * 14 13 10 29 29 H 1.08000 * 120.20493 * 0.04746 * 16 15 14 30 30 H 1.08002 * 119.66458 * 179.68822 * 19 17 16 31 31 H 1.07995 * 120.01112 * 180.30144 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 1 2.9299 -3.5548 0.8427 12 7 3.0075 -3.6545 -1.2543 13 6 1.4959 -4.9636 0.1264 14 6 1.3520 -5.6598 1.2621 15 6 0.5594 -6.8462 0.9171 16 6 0.0784 -7.9395 1.6363 17 6 -0.6624 -8.9061 0.9909 18 17 -1.2716 -10.2665 1.8808 19 6 -0.9177 -8.7992 -0.3698 20 6 -0.4469 -7.7235 -1.0913 21 6 0.2962 -6.7350 -0.4583 22 8 0.8754 -5.5947 -0.8857 23 1 -0.4850 0.8401 -0.0004 24 1 0.6241 -2.5574 -0.8881 25 1 0.6247 -2.5563 0.8919 26 1 3.7152 -4.3736 -1.2521 27 1 2.3947 -3.7526 -2.0499 28 1 1.7415 -5.4008 2.2355 29 1 0.2804 -8.0256 2.6937 30 1 -1.4950 -9.5647 -0.8671 31 1 -0.6560 -7.6488 -2.1482 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259592721.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:32 Heat of formation + Delta-G solvation = 10.924466 kcal Electronic energy + Delta-G solvation = -16855.769867 eV Core-core repulsion = 13935.894361 eV Total energy + Delta-G solvation = -2919.875505 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.37819 -38.24307 -36.42015 -35.53669 -32.74708 -32.34870 -30.24167 -29.19752 -28.24942 -24.66704 -23.04175 -22.28597 -21.30706 -20.15879 -17.42918 -16.95517 -16.58867 -15.95359 -15.60241 -15.24200 -14.42657 -14.30305 -14.23359 -13.33180 -13.21702 -13.07825 -12.77943 -12.54618 -12.13966 -11.47624 -11.35285 -11.23230 -10.99187 -10.91782 -10.66556 -10.45634 -10.17160 -9.62108 -9.21037 -8.50163 -8.38660 -8.26386 -8.01252 -5.98900 -3.99303 0.82119 1.10429 1.96161 2.49626 2.81732 3.35331 3.41268 3.44946 3.50850 4.40442 4.50118 4.61337 4.90894 5.06836 5.13625 5.26125 5.29215 5.40465 5.60530 5.77625 5.86765 6.00294 6.04429 6.16094 6.38056 6.48829 6.53863 7.22389 7.38298 7.55615 7.79469 7.97376 8.01148 8.38133 9.06228 9.63364 11.12823 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.042559 B = 0.003735 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.745787 B = 7494.144144 C = 7647.478231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.053 3.947 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.499 4.499 8 H 0.065 0.935 9 C 0.032 3.968 10 C 0.168 3.832 11 H 0.107 0.893 12 N -0.818 5.818 13 C 0.039 3.961 14 C -0.226 4.226 15 C -0.109 4.109 16 C -0.066 4.066 17 C -0.053 4.053 18 Cl -0.073 7.073 19 C -0.098 4.098 20 C -0.090 4.090 21 C 0.049 3.951 22 O -0.186 6.186 23 H 0.260 0.740 24 H 0.022 0.978 25 H 0.025 0.975 26 H 0.326 0.674 27 H 0.343 0.657 28 H 0.160 0.840 29 H 0.136 0.864 30 H 0.142 0.858 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.206 -18.310 0.803 18.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.148 4.148 3 Si 0.725 3.275 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.538 4.538 8 H 0.083 0.917 9 C -0.005 4.005 10 C 0.055 3.945 11 H 0.124 0.876 12 N -0.344 5.344 13 C -0.012 4.012 14 C -0.246 4.246 15 C -0.110 4.110 16 C -0.085 4.085 17 C -0.079 4.079 18 Cl -0.044 7.044 19 C -0.116 4.116 20 C -0.109 4.109 21 C 0.001 3.999 22 O -0.087 6.087 23 H 0.069 0.931 24 H 0.040 0.960 25 H 0.044 0.956 26 H 0.138 0.862 27 H 0.157 0.843 28 H 0.177 0.823 29 H 0.154 0.846 30 H 0.159 0.841 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.187 -17.453 0.804 17.472 hybrid contribution -0.184 -0.252 0.156 0.349 sum -0.372 -17.704 0.960 17.734 Atomic orbital electron populations 1.69971 1.06085 1.26622 1.51293 1.25021 0.94829 0.99327 0.95598 0.86522 0.79705 0.83252 0.78042 1.20756 1.21495 1.19859 1.21056 0.93415 0.89657 1.49642 0.91659 1.19232 0.92884 0.90374 0.98011 1.20973 0.93975 0.85665 0.93845 0.87573 1.58714 1.17813 1.54026 1.03846 1.24851 0.94514 0.96449 0.85359 1.22226 1.07265 0.95132 0.99967 1.19871 1.01283 0.96445 0.93443 1.20304 0.96559 0.91538 1.00114 1.20559 1.02912 0.91801 0.92675 1.98355 1.86730 1.43765 1.75591 1.20665 1.00931 0.98183 0.91843 1.19812 0.98765 0.91701 1.00574 1.19742 0.98719 0.88393 0.93049 1.84014 1.57171 1.30164 1.37324 0.93061 0.96013 0.95645 0.86232 0.84340 0.82287 0.84608 0.84054 0.84263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 2 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.50 -13.60 8.84 -34.44 -0.30 -13.90 16 8 H 0.07 1.75 7.74 -52.48 -0.41 1.34 16 9 C 0.03 0.80 4.60 -27.88 -0.13 0.67 16 10 C 0.17 3.23 3.13 -68.87 -0.22 3.01 16 11 H 0.11 1.96 8.12 -51.93 -0.42 1.54 16 12 N -0.82 -14.48 8.93 -5.66 -0.05 -14.53 16 13 C 0.04 0.68 6.06 -35.80 -0.22 0.47 16 14 C -0.23 -3.65 10.99 -37.62 -0.41 -4.06 16 15 C -0.11 -1.68 6.40 -105.16 -0.67 -2.35 16 16 C -0.07 -0.87 9.87 -39.29 -0.39 -1.26 16 17 C -0.05 -0.63 6.32 -39.50 -0.25 -0.88 16 18 Cl -0.07 -0.77 28.95 -51.86 -1.50 -2.27 16 19 C -0.10 -1.09 9.79 -39.51 -0.39 -1.47 16 20 C -0.09 -1.13 10.06 -39.48 -0.40 -1.52 16 21 C 0.05 0.77 7.41 -38.49 -0.29 0.48 16 22 O -0.19 -3.27 10.40 3.80 0.04 -3.23 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.33 4.78 9.06 -39.29 -0.36 4.43 16 27 H 0.34 6.05 8.84 -39.29 -0.35 5.70 16 28 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 29 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 291.94 15.07 4.40 4.40 Total: -1.00 -29.96 291.94 -8.36 -38.32 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -3.20 Total: 6.21 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -3.76 Total: -19.44 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.69 Total: -40.53 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: 0.04 Total: -3.23 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.96 -8.36 -38.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592721.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.240 kcal (2) G-P(sol) polarization free energy of solvation -29.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds