Wall clock time and date at job start Mon Mar 30 2020 06:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00031 * 2 1 4 4 H 1.48505 * 109.46918 * 269.99638 * 3 2 1 5 5 H 1.48498 * 109.47130 * 29.99764 * 3 2 1 6 6 H 1.48505 * 109.47035 * 150.00028 * 3 2 1 7 7 C 1.37877 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00173 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00168 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47562 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.46492 * 55.00256 * 10 9 7 12 12 N 1.46896 * 109.47136 * 295.00569 * 10 9 7 13 13 C 1.50700 * 109.47171 * 175.00259 * 10 9 7 14 14 C 1.33987 * 124.92156 * 260.00366 * 13 10 9 15 15 C 1.46791 * 106.18516 * 180.02562 * 14 13 10 16 16 C 1.39424 * 134.32805 * 179.97438 * 15 14 13 17 17 C 1.37826 * 119.58804 * 179.70073 * 16 15 14 18 18 Cl 1.73605 * 119.87530 * 180.30460 * 17 16 15 19 19 C 1.38856 * 120.24928 * 0.62271 * 17 16 15 20 20 C 1.37817 * 120.67874 * 359.40555 * 19 17 16 21 21 C 1.38926 * 119.97411 * 0.27577 * 20 19 17 22 22 O 1.34443 * 124.92221 * 80.03150 * 13 10 9 23 23 H 0.97000 * 119.99878 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46565 * 60.00104 * 9 7 2 25 25 H 1.08995 * 109.47177 * 300.00620 * 9 7 2 26 26 H 1.00902 * 111.00325 * 176.04147 * 12 10 9 27 27 H 1.00904 * 111.00234 * 299.99897 * 12 10 9 28 28 H 1.08000 * 126.91318 * 359.97438 * 14 13 10 29 29 H 1.08000 * 120.20493 * 0.04746 * 16 15 14 30 30 H 1.08002 * 119.66458 * 179.68822 * 19 17 16 31 31 H 1.07995 * 120.01112 * 180.30144 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 1 2.9299 -3.5548 0.8427 12 7 3.0075 -3.6545 -1.2543 13 6 1.4959 -4.9636 0.1264 14 6 1.3520 -5.6598 1.2621 15 6 0.5594 -6.8462 0.9171 16 6 0.0784 -7.9395 1.6363 17 6 -0.6624 -8.9061 0.9909 18 17 -1.2716 -10.2665 1.8808 19 6 -0.9177 -8.7992 -0.3698 20 6 -0.4469 -7.7235 -1.0913 21 6 0.2962 -6.7350 -0.4583 22 8 0.8754 -5.5947 -0.8857 23 1 -0.4850 0.8401 -0.0004 24 1 0.6241 -2.5574 -0.8881 25 1 0.6247 -2.5563 0.8919 26 1 3.7152 -4.3736 -1.2521 27 1 2.3947 -3.7526 -2.0499 28 1 1.7415 -5.4008 2.2355 29 1 0.2804 -8.0256 2.6937 30 1 -1.4950 -9.5647 -0.8671 31 1 -0.6560 -7.6488 -2.1482 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259592721.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:31 Heat of formation + Delta-G solvation = -7.541261 kcal Electronic energy + Delta-G solvation = -16856.570601 eV Core-core repulsion = 13935.894361 eV Total energy + Delta-G solvation = -2920.676239 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.56957 -39.27737 -37.46541 -37.01175 -34.56623 -33.72468 -31.29009 -30.50201 -30.01548 -26.36022 -24.29647 -23.63069 -22.54966 -21.60331 -18.67317 -18.48693 -17.97243 -17.27194 -16.86367 -16.79142 -16.34260 -15.49460 -15.23686 -14.78555 -14.44320 -14.25611 -14.14980 -13.86450 -13.56201 -13.21893 -12.86853 -12.52988 -12.45007 -12.31747 -12.25528 -11.86920 -11.73927 -11.29473 -11.09458 -10.53852 -9.72494 -9.53527 -9.21671 -8.13998 -6.21509 -0.23555 0.05266 1.02236 1.25946 1.45119 1.46229 1.57251 1.63949 2.46268 2.47349 3.19917 3.28920 3.57141 3.77371 3.89948 4.08152 4.13690 4.16673 4.38916 4.49800 4.71445 4.76297 4.92735 5.03885 5.09769 5.32101 5.37415 5.39222 5.54842 5.82583 6.00645 6.20507 6.35330 6.66884 6.92386 7.45836 8.98253 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.042559 B = 0.003735 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.745787 B = 7494.144144 C = 7647.478231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.005 4.005 3 Si 0.966 3.034 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.508 4.508 8 H 0.069 0.931 9 C 0.040 3.960 10 C 0.183 3.817 11 H 0.115 0.885 12 N -0.822 5.822 13 C 0.010 3.990 14 C -0.217 4.217 15 C -0.131 4.131 16 C -0.069 4.069 17 C -0.055 4.055 18 Cl -0.055 7.055 19 C -0.082 4.082 20 C -0.094 4.094 21 C 0.024 3.976 22 O -0.203 6.203 23 H 0.260 0.740 24 H -0.011 1.011 25 H -0.002 1.002 26 H 0.346 0.654 27 H 0.342 0.658 28 H 0.175 0.825 29 H 0.152 0.848 30 H 0.176 0.824 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.207 -19.834 0.990 19.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.546 4.546 8 H 0.087 0.913 9 C 0.003 3.997 10 C 0.071 3.929 11 H 0.132 0.868 12 N -0.351 5.351 13 C -0.039 4.039 14 C -0.237 4.237 15 C -0.133 4.133 16 C -0.088 4.088 17 C -0.081 4.081 18 Cl -0.026 7.026 19 C -0.101 4.101 20 C -0.113 4.113 21 C -0.023 4.023 22 O -0.105 6.105 23 H 0.069 0.931 24 H 0.007 0.993 25 H 0.017 0.983 26 H 0.159 0.841 27 H 0.155 0.845 28 H 0.193 0.807 29 H 0.169 0.831 30 H 0.193 0.807 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.249 -19.003 0.998 19.031 hybrid contribution -0.408 0.024 0.120 0.426 sum -0.159 -18.979 1.118 19.013 Atomic orbital electron populations 1.70113 1.07821 1.27497 1.52697 1.25938 0.95644 1.03247 0.95346 0.85435 0.78695 0.78613 0.78173 1.20310 1.21294 1.18516 1.21432 0.93738 0.90785 1.48637 0.91259 1.19005 0.93282 0.92370 0.95073 1.20444 0.92950 0.84697 0.94829 0.86766 1.58635 1.18093 1.55160 1.03168 1.24384 0.96574 0.96768 0.86222 1.22531 1.06074 0.95077 0.99998 1.20014 1.02342 0.97137 0.93786 1.20510 0.96353 0.91027 1.00910 1.20740 1.02191 0.91945 0.93261 1.98368 1.86369 1.42623 1.75284 1.21091 0.99532 0.97947 0.91501 1.20205 0.98026 0.91112 1.01908 1.20289 0.99643 0.88534 0.93824 1.83942 1.57802 1.31145 1.37589 0.93087 0.99282 0.98349 0.84065 0.84487 0.80717 0.83060 0.80695 0.82020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.33 13.29 21.45 0.28 -57.05 16 2 C -0.01 -0.30 5.46 84.65 0.46 0.17 16 3 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 7 C -0.51 -28.12 8.84 25.60 0.23 -27.90 16 8 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 9 C 0.04 2.07 4.60 29.85 0.14 2.20 16 10 C 0.18 7.20 3.13 44.17 0.14 7.34 16 11 H 0.11 4.23 8.12 -2.39 -0.02 4.21 16 12 N -0.82 -29.33 8.93 -171.81 -1.53 -30.86 16 13 C 0.01 0.38 6.06 24.72 0.15 0.53 16 14 C -0.22 -7.02 10.99 23.54 0.26 -6.76 16 15 C -0.13 -3.97 6.40 -20.21 -0.13 -4.10 16 16 C -0.07 -1.70 9.87 22.46 0.22 -1.48 16 17 C -0.05 -1.17 6.32 22.32 0.14 -1.03 16 18 Cl -0.06 -1.01 28.95 -2.72 -0.08 -1.09 16 19 C -0.08 -1.59 9.79 22.32 0.22 -1.37 16 20 C -0.09 -2.18 10.06 22.34 0.22 -1.96 16 21 C 0.02 0.76 7.41 22.98 0.17 0.93 16 22 O -0.20 -7.29 10.40 -9.30 -0.10 -7.39 16 23 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 24 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 25 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 26 H 0.35 9.97 9.06 -89.69 -0.81 9.16 16 27 H 0.34 12.34 8.84 -89.69 -0.79 11.55 16 28 H 0.18 4.83 8.06 -2.91 -0.02 4.81 16 29 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 31 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -65.49 291.94 2.39 -63.10 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -0.43 Total: 20.22 kcal Atomic # 6 Polarization: -35.66 SS G_CDS: 2.22 Total: -33.44 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -1.25 Total: -87.91 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.10 Total: -7.39 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.09 kcal Total: -65.49 2.39 -63.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592721.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.554 kcal (2) G-P(sol) polarization free energy of solvation -65.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds