Wall clock time and date at job start Mon Mar 30 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99680 * 2 1 4 4 H 1.48495 * 109.47359 * 270.00399 * 3 2 1 5 5 H 1.48502 * 109.46882 * 30.00617 * 3 2 1 6 6 H 1.48503 * 109.46822 * 150.00046 * 3 2 1 7 7 C 1.37869 * 120.00633 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00555 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99717 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47021 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47380 * 304.99993 * 10 9 7 12 12 N 1.46904 * 109.47263 * 65.00286 * 10 9 7 13 13 C 1.50704 * 109.47061 * 184.99925 * 10 9 7 14 14 C 1.33990 * 124.92014 * 100.00315 * 13 10 9 15 15 C 1.46785 * 106.18271 * 180.02562 * 14 13 10 16 16 C 1.39426 * 134.32956 * 180.02562 * 15 14 13 17 17 C 1.37827 * 119.59547 * 179.97438 * 16 15 14 18 18 Cl 1.73599 * 119.87665 * 179.97438 * 17 16 15 19 19 C 1.38860 * 120.24310 * 0.25969 * 17 16 15 20 20 C 1.37808 * 120.68159 * 359.48139 * 19 17 16 21 21 C 1.38929 * 119.97335 * 0.51430 * 20 19 17 22 22 O 1.34439 * 124.92154 * 280.04121 * 13 10 9 23 23 H 0.97001 * 120.00734 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.47226 * 60.00225 * 9 7 2 25 25 H 1.08997 * 109.46947 * 299.99780 * 9 7 2 26 26 H 1.00907 * 110.99665 * 296.04295 * 12 10 9 27 27 H 1.00900 * 111.00382 * 59.99493 * 12 10 9 28 28 H 1.08000 * 126.91501 * 0.03422 * 14 13 10 29 29 H 1.08006 * 120.20179 * 359.95617 * 16 15 14 30 30 H 1.07999 * 119.66099 * 179.74332 * 19 17 16 31 31 H 1.08003 * 120.01596 * 180.25564 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 1 2.9296 -3.5551 -0.8423 12 7 3.0085 -3.6538 1.2547 13 6 1.4961 -4.9636 -0.1244 14 6 1.3515 -5.6604 -1.2597 15 6 0.5582 -6.8460 -0.9138 16 6 0.0764 -7.9394 -1.6323 17 6 -0.6593 -8.9086 -0.9849 18 17 -1.2633 -10.2728 -1.8724 19 6 -0.9240 -8.7949 0.3735 20 6 -0.4486 -7.7214 1.0951 21 6 0.2949 -6.7336 0.4614 22 8 0.8753 -5.5936 0.8881 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8902 25 1 0.6249 -2.5571 0.8897 26 1 3.5702 -2.8190 1.3310 27 1 2.3963 -3.7516 2.0508 28 1 1.7405 -5.4019 -2.2335 29 1 0.2781 -8.0263 -2.6897 30 1 -1.5050 -9.5577 0.8705 31 1 -0.6575 -7.6458 2.1521 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259592726.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:33 Heat of formation + Delta-G solvation = 6.365330 kcal Electronic energy + Delta-G solvation = -16856.266069 eV Core-core repulsion = 13936.192865 eV Total energy + Delta-G solvation = -2920.073204 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.26504 -38.15173 -36.35839 -35.62548 -32.75931 -32.34540 -30.14796 -29.19052 -28.04610 -24.84294 -22.98130 -22.25714 -21.27369 -20.15431 -17.34293 -16.93626 -16.73355 -15.89148 -15.60883 -14.82925 -14.67218 -14.21450 -14.08791 -13.27697 -13.14806 -12.85393 -12.57901 -12.45206 -12.30370 -11.78642 -11.40065 -11.22419 -11.11123 -10.88855 -10.78020 -10.55069 -10.18453 -9.90636 -9.36636 -8.58274 -8.42531 -8.19377 -7.78031 -6.18545 -4.24996 0.91852 1.19765 2.03181 2.62734 2.92926 3.21576 3.28871 3.30663 3.59975 4.29471 4.49336 4.68675 4.99422 5.11824 5.17789 5.25834 5.31018 5.56679 5.67835 5.86307 5.91982 6.10802 6.13139 6.26396 6.37567 6.53153 6.62676 7.27149 7.33812 7.44412 7.72746 7.81333 8.04775 8.14434 8.80694 9.41186 10.92076 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.042944 B = 0.003730 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.855771 B = 7505.028455 C = 7653.987239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.531 4.531 8 H 0.060 0.940 9 C -0.003 4.003 10 C 0.159 3.841 11 H 0.104 0.896 12 N -0.839 5.839 13 C 0.096 3.904 14 C -0.233 4.233 15 C -0.107 4.107 16 C -0.067 4.067 17 C -0.053 4.053 18 Cl -0.075 7.075 19 C -0.099 4.099 20 C -0.089 4.089 21 C 0.050 3.950 22 O -0.181 6.181 23 H 0.263 0.737 24 H 0.025 0.975 25 H 0.023 0.977 26 H 0.353 0.647 27 H 0.338 0.662 28 H 0.159 0.841 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.545 -15.938 -0.615 15.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.042 4.042 10 C 0.047 3.953 11 H 0.122 0.878 12 N -0.369 5.369 13 C 0.047 3.953 14 C -0.252 4.252 15 C -0.108 4.108 16 C -0.086 4.086 17 C -0.080 4.080 18 Cl -0.046 7.046 19 C -0.118 4.118 20 C -0.108 4.108 21 C 0.002 3.998 22 O -0.082 6.082 23 H 0.073 0.927 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.168 0.832 27 H 0.149 0.851 28 H 0.176 0.824 29 H 0.153 0.847 30 H 0.159 0.841 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.403 -16.500 -0.698 16.520 hybrid contribution -0.340 1.693 -0.115 1.730 sum -0.743 -14.807 -0.813 14.848 Atomic orbital electron populations 1.69965 1.06182 1.27052 1.49391 1.25012 0.94848 0.99461 0.94738 0.86524 0.79775 0.83052 0.78260 1.20508 1.21158 1.19684 1.21046 0.92940 0.90386 1.52545 0.92182 1.19876 0.94417 0.91303 0.98584 1.20518 0.94081 0.86023 0.94643 0.87841 1.59193 1.27888 1.46175 1.03640 1.23102 0.93000 0.94334 0.84829 1.22080 1.07965 0.95273 0.99913 1.19817 1.01129 0.96408 0.93429 1.20284 0.96731 0.91529 1.00050 1.20540 1.03093 0.91659 0.92709 1.98350 1.86953 1.43571 1.75758 1.20640 1.01019 0.98249 0.91879 1.19799 0.98737 0.91764 1.00491 1.19721 0.98673 0.88440 0.93009 1.84033 1.56865 1.30049 1.37214 0.92685 0.95652 0.95905 0.83206 0.85107 0.82355 0.84671 0.84142 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.53 -13.74 8.55 -34.44 -0.29 -14.03 16 8 H 0.06 1.47 7.15 -52.49 -0.38 1.10 16 9 C 0.00 -0.08 4.60 -27.88 -0.13 -0.21 16 10 C 0.16 3.11 3.19 -68.86 -0.22 2.89 16 11 H 0.10 1.95 8.12 -51.93 -0.42 1.53 16 12 N -0.84 -15.22 9.18 -5.65 -0.05 -15.27 16 13 C 0.10 1.79 6.07 -35.80 -0.22 1.58 16 14 C -0.23 -3.94 10.99 -37.62 -0.41 -4.35 16 15 C -0.11 -1.71 6.40 -105.16 -0.67 -2.38 16 16 C -0.07 -0.92 9.87 -39.29 -0.39 -1.30 16 17 C -0.05 -0.67 6.32 -39.50 -0.25 -0.92 16 18 Cl -0.08 -0.82 28.95 -51.86 -1.50 -2.32 16 19 C -0.10 -1.15 9.79 -39.51 -0.39 -1.54 16 20 C -0.09 -1.17 10.06 -39.48 -0.40 -1.57 16 21 C 0.05 0.82 7.41 -38.49 -0.29 0.53 16 22 O -0.18 -3.36 10.40 3.79 0.04 -3.32 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.35 6.32 7.90 -39.29 -0.31 6.01 16 27 H 0.34 6.08 8.84 -39.29 -0.35 5.73 16 28 H 0.16 2.33 8.06 -52.49 -0.42 1.90 16 29 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 30 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.14 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 290.21 15.07 4.37 4.37 Total: -1.00 -28.49 290.21 -8.30 -36.79 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -3.13 Total: 8.82 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -3.75 Total: -19.72 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.68 Total: -40.11 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: 0.04 Total: -3.32 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.49 -8.30 -36.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592726.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.151 kcal (2) G-P(sol) polarization free energy of solvation -28.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds