Wall clock time and date at job start Mon Mar 30 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99680 * 2 1 4 4 H 1.48495 * 109.47359 * 270.00399 * 3 2 1 5 5 H 1.48502 * 109.46882 * 30.00617 * 3 2 1 6 6 H 1.48503 * 109.46822 * 150.00046 * 3 2 1 7 7 C 1.37869 * 120.00633 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00555 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99717 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47021 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47380 * 304.99993 * 10 9 7 12 12 N 1.46904 * 109.47263 * 65.00286 * 10 9 7 13 13 C 1.50704 * 109.47061 * 184.99925 * 10 9 7 14 14 C 1.33990 * 124.92014 * 100.00315 * 13 10 9 15 15 C 1.46785 * 106.18271 * 180.02562 * 14 13 10 16 16 C 1.39426 * 134.32956 * 180.02562 * 15 14 13 17 17 C 1.37827 * 119.59547 * 179.97438 * 16 15 14 18 18 Cl 1.73599 * 119.87665 * 179.97438 * 17 16 15 19 19 C 1.38860 * 120.24310 * 0.25969 * 17 16 15 20 20 C 1.37808 * 120.68159 * 359.48139 * 19 17 16 21 21 C 1.38929 * 119.97335 * 0.51430 * 20 19 17 22 22 O 1.34439 * 124.92154 * 280.04121 * 13 10 9 23 23 H 0.97001 * 120.00734 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.47226 * 60.00225 * 9 7 2 25 25 H 1.08997 * 109.46947 * 299.99780 * 9 7 2 26 26 H 1.00907 * 110.99665 * 296.04295 * 12 10 9 27 27 H 1.00900 * 111.00382 * 59.99493 * 12 10 9 28 28 H 1.08000 * 126.91501 * 0.03422 * 14 13 10 29 29 H 1.08006 * 120.20179 * 359.95617 * 16 15 14 30 30 H 1.07999 * 119.66099 * 179.74332 * 19 17 16 31 31 H 1.08003 * 120.01596 * 180.25564 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 1 2.9296 -3.5551 -0.8423 12 7 3.0085 -3.6538 1.2547 13 6 1.4961 -4.9636 -0.1244 14 6 1.3515 -5.6604 -1.2597 15 6 0.5582 -6.8460 -0.9138 16 6 0.0764 -7.9394 -1.6323 17 6 -0.6593 -8.9086 -0.9849 18 17 -1.2633 -10.2728 -1.8724 19 6 -0.9240 -8.7949 0.3735 20 6 -0.4486 -7.7214 1.0951 21 6 0.2949 -6.7336 0.4614 22 8 0.8753 -5.5936 0.8881 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8902 25 1 0.6249 -2.5571 0.8897 26 1 3.5702 -2.8190 1.3310 27 1 2.3963 -3.7516 2.0508 28 1 1.7405 -5.4019 -2.2335 29 1 0.2781 -8.0263 -2.6897 30 1 -1.5050 -9.5577 0.8705 31 1 -0.6575 -7.6458 2.1521 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259592726.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:33 Heat of formation + Delta-G solvation = -10.692579 kcal Electronic energy + Delta-G solvation = -16857.005756 eV Core-core repulsion = 13936.192865 eV Total energy + Delta-G solvation = -2920.812891 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.51076 -39.23340 -37.51296 -37.07622 -34.57758 -33.70939 -31.24336 -30.44958 -29.88666 -26.49137 -24.30313 -23.62404 -22.55441 -21.59754 -18.84885 -18.45614 -17.89343 -17.24193 -17.03016 -16.55837 -16.21169 -15.43344 -15.18865 -14.66342 -14.40472 -14.22169 -14.15547 -14.04245 -13.52282 -13.37543 -12.92421 -12.60740 -12.45778 -12.33024 -12.22527 -12.00124 -11.80149 -11.35076 -11.15641 -10.64465 -9.69295 -9.48114 -9.13675 -8.24727 -6.38162 -0.18431 0.09809 1.05206 1.32706 1.42208 1.42474 1.53400 1.70164 2.38399 2.50928 3.09311 3.27071 3.60362 3.86743 3.94657 4.13131 4.16974 4.19913 4.47357 4.50903 4.63963 4.78938 4.96896 5.07360 5.13032 5.29067 5.35501 5.36754 5.50465 5.69197 6.06309 6.07771 6.25102 6.59099 6.77415 7.32837 8.86832 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.042944 B = 0.003730 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.855771 B = 7505.028455 C = 7653.987239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.257 1.257 7 C -0.537 4.537 8 H 0.075 0.925 9 C 0.007 3.993 10 C 0.174 3.826 11 H 0.112 0.888 12 N -0.828 5.828 13 C 0.061 3.939 14 C -0.225 4.225 15 C -0.129 4.129 16 C -0.070 4.070 17 C -0.055 4.055 18 Cl -0.056 7.056 19 C -0.083 4.083 20 C -0.094 4.094 21 C 0.024 3.976 22 O -0.201 6.201 23 H 0.263 0.737 24 H -0.006 1.006 25 H -0.010 1.010 26 H 0.355 0.645 27 H 0.338 0.662 28 H 0.175 0.825 29 H 0.152 0.848 30 H 0.176 0.824 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.070 -17.362 -0.779 17.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.792 3.208 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.180 1.180 7 C -0.575 4.575 8 H 0.093 0.907 9 C -0.032 4.032 10 C 0.062 3.938 11 H 0.130 0.870 12 N -0.357 5.357 13 C 0.012 3.988 14 C -0.244 4.244 15 C -0.130 4.130 16 C -0.088 4.088 17 C -0.081 4.081 18 Cl -0.027 7.027 19 C -0.102 4.102 20 C -0.112 4.112 21 C -0.024 4.024 22 O -0.102 6.102 23 H 0.072 0.928 24 H 0.012 0.988 25 H 0.009 0.991 26 H 0.169 0.831 27 H 0.149 0.851 28 H 0.193 0.807 29 H 0.170 0.830 30 H 0.193 0.807 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.093 -17.945 -0.864 17.966 hybrid contribution -0.593 1.928 -0.094 2.019 sum -0.500 -16.017 -0.957 16.054 Atomic orbital electron populations 1.70116 1.08073 1.27915 1.51081 1.25972 0.95612 1.03493 0.94446 0.85398 0.78771 0.78179 0.78404 1.19988 1.21408 1.18046 1.21485 0.93785 0.91022 1.51228 0.90708 1.19715 0.94618 0.93376 0.95474 1.20182 0.92989 0.85179 0.95486 0.87029 1.59194 1.27389 1.45986 1.03165 1.22863 0.95171 0.94949 0.85776 1.22409 1.06795 0.95232 0.99952 1.19965 1.02200 0.97113 0.93764 1.20495 0.96494 0.90975 1.00876 1.20723 1.02307 0.91821 0.93291 1.98364 1.86569 1.42336 1.75419 1.21075 0.99582 0.97964 0.91535 1.20201 0.97993 0.91159 1.01851 1.20295 0.99658 0.88576 0.93842 1.83955 1.57560 1.31127 1.37565 0.92776 0.98762 0.99123 0.83055 0.85097 0.80725 0.83046 0.80686 0.82021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.26 13.29 21.44 0.28 -54.97 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.97 42.16 29.54 68.60 2.03 44.18 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.54 -28.14 8.55 25.60 0.22 -27.92 16 8 H 0.07 3.62 7.15 -2.91 -0.02 3.59 16 9 C 0.01 0.35 4.60 29.85 0.14 0.48 16 10 C 0.17 6.95 3.19 44.17 0.14 7.09 16 11 H 0.11 4.23 8.12 -2.39 -0.02 4.21 16 12 N -0.83 -30.27 9.18 -171.79 -1.58 -31.85 16 13 C 0.06 2.32 6.07 24.72 0.15 2.47 16 14 C -0.22 -7.66 10.99 23.54 0.26 -7.40 16 15 C -0.13 -4.10 6.40 -20.21 -0.13 -4.23 16 16 C -0.07 -1.79 9.87 22.46 0.22 -1.57 16 17 C -0.05 -1.22 6.32 22.32 0.14 -1.08 16 18 Cl -0.06 -1.05 28.95 -2.72 -0.08 -1.13 16 19 C -0.08 -1.69 9.79 22.32 0.22 -1.47 16 20 C -0.09 -2.29 10.06 22.33 0.22 -2.06 16 21 C 0.02 0.78 7.41 22.98 0.17 0.95 16 22 O -0.20 -7.66 10.40 -9.35 -0.10 -7.76 16 23 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 24 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 25 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 26 H 0.35 12.60 7.90 -89.69 -0.71 11.89 16 27 H 0.34 12.44 8.84 -89.69 -0.79 11.65 16 28 H 0.18 5.09 8.06 -2.91 -0.02 5.07 16 29 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 30 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 31 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -62.52 290.21 2.45 -60.07 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -0.32 Total: 25.55 kcal Atomic # 6 Polarization: -36.31 SS G_CDS: 2.21 Total: -34.10 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -1.29 Total: -86.82 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.10 Total: -7.76 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.13 kcal Total: -62.52 2.45 -60.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259592726.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.376 kcal (2) G-P(sol) polarization free energy of solvation -62.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds