Wall clock time and date at job start Mon Mar 30 2020 06:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37706 * 125.06083 * 2 1 4 4 C 1.39139 * 133.41985 * 359.96291 * 3 2 1 5 5 C 1.37713 * 119.94473 * 180.28964 * 4 3 2 6 6 C 1.38840 * 120.68017 * 359.97438 * 5 4 3 7 7 C 1.37717 * 120.37603 * 359.97438 * 6 5 4 8 8 Cl 1.73598 * 120.19104 * 180.02562 * 7 6 5 9 9 C 1.39745 * 119.62574 * 0.04213 * 7 6 5 10 10 C 1.46490 * 133.99591 * 179.97438 * 9 7 6 11 11 C 1.34230 * 106.99152 * 179.97438 * 10 9 7 12 12 C 1.50698 * 125.04142 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.47104 * 155.23868 * 12 11 10 14 14 O 1.42906 * 109.47051 * 35.23876 * 12 11 10 15 15 C 1.50704 * 109.47149 * 275.23904 * 12 11 10 16 16 H 1.07999 * 119.99896 * 359.72498 * 15 12 11 17 17 C 1.37877 * 119.99508 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99856 * 179.72399 * 17 15 12 19 19 Si 1.86796 * 120.00448 * 359.72425 * 17 15 12 20 20 H 1.48503 * 109.47434 * 89.99988 * 19 17 15 21 21 H 1.48501 * 109.47410 * 210.00216 * 19 17 15 22 22 H 1.48499 * 109.46958 * 330.00004 * 19 17 15 23 23 H 1.09006 * 109.47061 * 265.02696 * 1 2 3 24 24 H 1.08997 * 109.47336 * 25.02648 * 1 2 3 25 25 H 1.08999 * 109.47536 * 145.03015 * 1 2 3 26 26 H 1.08002 * 120.02703 * 0.26619 * 4 3 2 27 27 H 1.07999 * 119.66005 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.81566 * 179.97438 * 6 5 4 29 29 H 1.07994 * 126.50623 * 359.95502 * 10 9 7 30 30 H 0.96696 * 113.99487 * 294.95466 * 14 12 11 31 31 H 0.96991 * 120.00361 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2561 1.1272 0.0000 4 6 1.9782 2.4905 -0.0007 5 6 3.0102 3.4024 -0.0065 6 6 4.3317 2.9767 -0.0112 7 6 4.6302 1.6323 -0.0096 8 17 6.2843 1.1053 -0.0148 9 6 3.5941 0.6946 -0.0041 10 6 3.5469 -0.7696 -0.0015 11 6 2.2512 -1.1202 0.0047 12 6 1.7382 -2.5372 0.0086 13 1 0.7390 -2.5607 0.4435 14 8 2.6142 -3.3587 0.7832 15 6 1.6830 -3.0554 -1.4054 16 1 1.9845 -2.4205 -2.2254 17 6 1.2426 -4.3383 -1.6526 18 7 1.1892 -4.7888 -2.8871 19 14 0.7218 -5.4368 -0.2344 20 1 -0.7290 -5.2550 0.0257 21 1 0.9881 -6.8554 -0.5832 22 1 1.4921 -5.0731 0.9820 23 1 -0.3633 -0.0891 1.0239 24 1 -0.3634 0.9311 -0.4347 25 1 -0.3634 -0.8421 -0.5890 26 1 0.9540 2.8334 0.0030 27 1 2.7892 4.4596 -0.0074 28 1 5.1301 3.7039 -0.0162 29 1 4.3937 -1.4397 -0.0043 30 1 3.5023 -3.4469 0.4108 31 1 0.8798 -5.6914 -3.0611 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259594802.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:17 Heat of formation + Delta-G solvation = -14.747839 kcal Electronic energy + Delta-G solvation = -17529.270369 eV Core-core repulsion = 14608.281629 eV Total energy + Delta-G solvation = -2920.988740 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.32745 -38.72518 -37.64305 -36.90886 -34.52625 -33.65743 -31.37589 -30.65723 -28.74162 -27.09695 -25.01318 -22.71138 -22.54655 -20.65967 -19.56971 -18.17763 -17.54598 -16.99674 -16.69796 -16.21069 -15.69919 -15.56651 -15.25650 -15.01626 -14.37112 -14.22701 -14.04871 -13.81727 -13.22871 -13.15625 -12.90235 -12.86029 -12.65475 -12.18569 -12.03163 -11.83009 -11.79204 -11.27956 -10.90679 -10.48944 -10.34959 -9.06560 -8.49676 -8.39280 -6.58703 0.04041 0.60934 1.26188 1.38320 1.45619 1.72295 1.77071 1.92827 2.38966 2.82911 2.96534 3.74303 3.83940 3.91427 3.94437 4.20428 4.24567 4.42086 4.46082 4.60289 4.69886 4.70676 4.87612 4.99204 5.17286 5.28359 5.41650 5.47107 5.74101 5.88683 5.99343 6.23148 6.40807 6.54919 6.99823 7.20925 8.73483 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.025631 B = 0.006162 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.184958 B = 4542.892319 C = 5157.420172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.482 5.482 3 C 0.085 3.915 4 C -0.123 4.123 5 C -0.089 4.089 6 C -0.139 4.139 7 C -0.009 4.009 8 Cl -0.079 7.079 9 C -0.127 4.127 10 C -0.223 4.223 11 C 0.087 3.913 12 C 0.262 3.738 13 H 0.070 0.930 14 O -0.570 6.570 15 C -0.557 4.557 16 H 0.030 0.970 17 C 0.037 3.963 18 N -0.931 5.931 19 Si 0.935 3.065 20 H -0.276 1.276 21 H -0.294 1.294 22 H -0.206 1.206 23 H 0.086 0.914 24 H 0.107 0.893 25 H 0.074 0.926 26 H 0.151 0.849 27 H 0.173 0.827 28 H 0.155 0.845 29 H 0.139 0.861 30 H 0.374 0.626 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.311 15.420 8.215 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.166 5.166 3 C -0.021 4.021 4 C -0.144 4.144 5 C -0.108 4.108 6 C -0.159 4.159 7 C -0.036 4.036 8 Cl -0.050 7.050 9 C -0.133 4.133 10 C -0.247 4.247 11 C -0.021 4.021 12 C 0.203 3.797 13 H 0.088 0.912 14 O -0.377 6.377 15 C -0.594 4.594 16 H 0.048 0.952 17 C -0.164 4.164 18 N -0.569 5.569 19 Si 0.758 3.242 20 H -0.202 1.202 21 H -0.221 1.221 22 H -0.127 1.127 23 H 0.104 0.896 24 H 0.125 0.875 25 H 0.093 0.907 26 H 0.169 0.831 27 H 0.191 0.809 28 H 0.172 0.828 29 H 0.157 0.843 30 H 0.223 0.777 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.539 15.138 8.490 17.364 hybrid contribution 0.452 -1.099 -0.595 1.329 sum 0.992 14.038 7.894 16.136 Atomic orbital electron populations 1.22184 0.75497 1.05307 1.04077 1.43937 1.07071 1.03273 1.62337 1.18566 0.89125 0.89478 1.04982 1.20474 1.01739 0.87605 1.04569 1.21123 0.90141 1.00743 0.98837 1.21108 0.98736 0.92346 1.03702 1.20479 0.83604 0.93656 1.05885 1.98326 1.18294 1.91449 1.96925 1.19115 0.92524 0.93463 1.08166 1.21284 0.95565 0.92752 1.15142 1.21493 0.91049 0.90046 0.99560 1.18093 0.90272 0.81083 0.90218 0.91209 1.86618 1.26804 1.70144 1.54106 1.21401 1.46696 0.99506 0.91835 0.95159 1.25822 0.93209 0.99165 0.98219 1.70056 1.46496 1.18379 1.21980 0.86039 0.79008 0.76624 0.82497 1.20230 1.22109 1.12742 0.89551 0.87453 0.90694 0.83110 0.80920 0.82775 0.84314 0.77694 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.92 10.48 127.77 1.34 3.26 16 2 N -0.48 -17.41 3.18 -524.68 -1.67 -19.08 16 3 C 0.09 2.87 6.80 39.02 0.27 3.13 16 4 C -0.12 -3.02 9.87 22.36 0.22 -2.80 16 5 C -0.09 -1.83 10.01 22.29 0.22 -1.60 16 6 C -0.14 -3.34 9.81 22.29 0.22 -3.12 16 7 C -0.01 -0.29 6.35 22.51 0.14 -0.15 16 8 Cl -0.08 -2.33 28.91 -2.72 -0.08 -2.41 16 9 C -0.13 -4.69 6.21 -20.18 -0.13 -4.81 16 10 C -0.22 -9.19 10.33 23.51 0.24 -8.95 16 11 C 0.09 3.67 5.85 40.86 0.24 3.90 16 12 C 0.26 11.93 2.36 29.10 0.07 12.00 16 13 H 0.07 3.08 6.89 -2.39 -0.02 3.07 16 14 O -0.57 -24.82 9.94 -148.98 -1.48 -26.31 16 15 C -0.56 -30.53 9.29 25.60 0.24 -30.29 16 16 H 0.03 1.90 7.98 -2.91 -0.02 1.88 16 17 C 0.04 2.06 5.47 84.65 0.46 2.52 16 18 N -0.93 -56.13 13.96 21.45 0.30 -55.83 16 19 Si 0.94 42.62 26.99 68.60 1.85 44.47 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.21 -8.95 5.29 99.48 0.53 -8.42 16 23 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 24 H 0.11 2.23 7.83 -2.39 -0.02 2.21 16 25 H 0.07 2.34 7.66 -2.39 -0.02 2.33 16 26 H 0.15 2.68 7.89 -2.91 -0.02 2.66 16 27 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 28 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 29 H 0.14 5.57 7.61 -2.91 -0.02 5.55 16 30 H 0.37 14.87 8.27 -74.06 -0.61 14.26 16 31 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -68.37 282.02 2.83 -65.54 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.37 Total: 20.51 kcal Atomic # 6 Polarization: -30.44 SS G_CDS: 3.54 Total: -26.90 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -1.37 Total: -74.91 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -1.48 Total: -26.31 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.85 Total: 44.47 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -0.08 Total: -2.41 kcal Total: -68.37 2.83 -65.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259594802.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.794 kcal (2) G-P(sol) polarization free energy of solvation -68.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds