Wall clock time and date at job start Mon Mar 30 2020 06:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37706 * 125.06482 * 2 1 4 4 C 1.39139 * 133.41647 * 359.97438 * 3 2 1 5 5 C 1.37719 * 119.94392 * 179.97438 * 4 3 2 6 6 C 1.38845 * 120.67954 * 359.97438 * 5 4 3 7 7 C 1.37718 * 120.37153 * 0.02562 * 6 5 4 8 8 Cl 1.73602 * 120.18582 * 180.02562 * 7 6 5 9 9 C 1.39742 * 119.62702 * 359.97438 * 7 6 5 10 10 C 1.46490 * 133.99029 * 180.02562 * 9 7 6 11 11 C 1.34226 * 106.99056 * 180.02562 * 10 9 7 12 12 C 1.50699 * 125.03830 * 179.97438 * 11 10 9 13 13 H 1.09004 * 109.47066 * 205.03931 * 12 11 10 14 14 O 1.42898 * 109.47527 * 325.04375 * 12 11 10 15 15 C 1.50701 * 109.47208 * 85.04869 * 12 11 10 16 16 H 1.08005 * 119.99573 * 359.97438 * 15 12 11 17 17 C 1.37873 * 120.00618 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99548 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 120.00336 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.46846 * 60.00331 * 19 17 15 21 21 H 1.48496 * 109.46873 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47104 * 300.00104 * 19 17 15 23 23 H 1.09008 * 109.47067 * 90.02072 * 1 2 3 24 24 H 1.08998 * 109.47529 * 210.02396 * 1 2 3 25 25 H 1.09002 * 109.47315 * 330.02669 * 1 2 3 26 26 H 1.07995 * 120.02902 * 0.02562 * 4 3 2 27 27 H 1.07994 * 119.65722 * 180.27938 * 5 4 3 28 28 H 1.08002 * 119.80701 * 180.02562 * 6 5 4 29 29 H 1.07995 * 126.50658 * 359.97438 * 10 9 7 30 30 H 0.96704 * 113.99703 * 60.00023 * 14 12 11 31 31 H 0.97008 * 119.99619 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2561 1.1271 0.0000 4 6 1.9783 2.4905 -0.0005 5 6 3.0103 3.4024 0.0002 6 6 4.3319 2.9766 0.0019 7 6 4.6303 1.6321 0.0024 8 17 6.2844 1.1051 0.0051 9 6 3.5941 0.6945 0.0017 10 6 3.5468 -0.7696 0.0024 11 6 2.2511 -1.1202 0.0006 12 6 1.7383 -2.5372 0.0000 13 1 0.7397 -2.5620 -0.4364 14 8 2.6155 -3.3611 -0.7706 15 6 1.6806 -3.0512 1.4154 16 1 1.9853 -2.4154 2.2336 17 6 1.2389 -4.3330 1.6661 18 7 0.8673 -5.1070 0.6698 19 14 1.1681 -4.9702 3.4206 20 1 0.2572 -4.1138 4.2218 21 1 0.6614 -6.3661 3.4201 22 1 2.5287 -4.9372 4.0145 23 1 -0.3634 -0.0004 -1.0277 24 1 -0.3634 -0.8897 0.5142 25 1 -0.3634 0.8902 0.5134 26 1 0.9542 2.8334 -0.0005 27 1 2.7894 4.4595 0.0044 28 1 5.1302 3.7040 0.0028 29 1 4.3937 -1.4398 0.0033 30 1 3.5236 -3.3864 -0.4391 31 1 0.5569 -6.0090 0.8461 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259594808.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:19 Heat of formation + Delta-G solvation = -19.912372 kcal Electronic energy + Delta-G solvation = -17481.979181 eV Core-core repulsion = 14560.766490 eV Total energy + Delta-G solvation = -2921.212691 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.30114 -38.62937 -37.50285 -36.83887 -34.39595 -33.61642 -31.27133 -30.54672 -28.46868 -27.06863 -25.21335 -22.70449 -22.56076 -20.64621 -19.20766 -18.16759 -17.50252 -16.75076 -16.72136 -16.22500 -15.75263 -15.56344 -15.16367 -14.87000 -14.22109 -14.13770 -13.99263 -13.38031 -13.21577 -13.11165 -12.85739 -12.80110 -12.76375 -12.19578 -12.08991 -11.83756 -11.78543 -11.36694 -10.81342 -10.53417 -10.33609 -9.06397 -8.50247 -8.18722 -6.48630 0.05606 0.62250 1.27137 1.38986 1.40440 1.48778 1.79782 1.94390 2.37192 2.84064 3.04901 3.80207 3.87578 3.95320 4.14856 4.22626 4.29812 4.41882 4.47624 4.64793 4.70348 4.78133 4.94903 5.00493 5.27318 5.43223 5.48336 5.58418 5.75811 5.89260 5.94240 6.26035 6.43976 6.59456 7.20635 7.36546 8.82157 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023107 B = 0.006016 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.448260 B = 4653.357462 C = 5173.001035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.482 5.482 3 C 0.084 3.916 4 C -0.123 4.123 5 C -0.090 4.090 6 C -0.139 4.139 7 C -0.009 4.009 8 Cl -0.079 7.079 9 C -0.125 4.125 10 C -0.229 4.229 11 C 0.085 3.915 12 C 0.289 3.711 13 H 0.044 0.956 14 O -0.568 6.568 15 C -0.575 4.575 16 H 0.051 0.949 17 C 0.036 3.964 18 N -0.892 5.892 19 Si 0.959 3.041 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.271 1.271 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.108 0.892 26 H 0.151 0.849 27 H 0.174 0.826 28 H 0.155 0.845 29 H 0.137 0.863 30 H 0.361 0.639 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.130 16.233 -0.425 16.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.166 5.166 3 C -0.023 4.023 4 C -0.144 4.144 5 C -0.109 4.109 6 C -0.158 4.158 7 C -0.036 4.036 8 Cl -0.050 7.050 9 C -0.130 4.130 10 C -0.253 4.253 11 C -0.024 4.024 12 C 0.231 3.769 13 H 0.061 0.939 14 O -0.371 6.371 15 C -0.612 4.612 16 H 0.069 0.931 17 C -0.167 4.167 18 N -0.528 5.528 19 Si 0.784 3.216 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.197 1.197 23 H 0.097 0.903 24 H 0.093 0.907 25 H 0.126 0.874 26 H 0.168 0.832 27 H 0.191 0.809 28 H 0.173 0.827 29 H 0.155 0.845 30 H 0.208 0.792 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.287 15.856 -0.851 15.931 hybrid contribution 0.599 -0.989 1.079 1.581 sum 1.886 14.867 0.228 14.988 Atomic orbital electron populations 1.22120 0.75665 1.05116 1.03776 1.43955 1.06998 1.03317 1.62338 1.18581 0.89129 0.89464 1.05096 1.20470 1.01727 0.87573 1.04587 1.21118 0.90127 1.00709 0.98916 1.21105 0.98718 0.92310 1.03700 1.20468 0.83559 0.93624 1.05974 1.98324 1.18287 1.91463 1.96935 1.19098 0.92509 0.93354 1.08068 1.21248 0.95429 0.92748 1.15828 1.21900 0.91147 0.90456 0.98855 1.17782 0.88944 0.79202 0.90987 0.93851 1.86541 1.23261 1.70671 1.56656 1.21615 1.47531 0.99604 0.92473 0.93061 1.25794 0.93192 0.96703 1.01059 1.70169 1.41339 1.08468 1.32843 0.85612 0.78822 0.77491 0.79709 1.19284 1.20417 1.19659 0.90285 0.90689 0.87372 0.83182 0.80903 0.82733 0.84504 0.79243 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.19 10.56 127.77 1.35 3.54 16 2 N -0.48 -18.20 3.18 -524.69 -1.67 -19.86 16 3 C 0.08 2.89 6.81 39.02 0.27 3.15 16 4 C -0.12 -3.07 9.95 22.36 0.22 -2.85 16 5 C -0.09 -1.85 10.01 22.29 0.22 -1.63 16 6 C -0.14 -3.34 9.81 22.29 0.22 -3.13 16 7 C -0.01 -0.29 6.35 22.51 0.14 -0.15 16 8 Cl -0.08 -2.35 28.91 -2.72 -0.08 -2.43 16 9 C -0.12 -4.68 6.21 -20.18 -0.13 -4.80 16 10 C -0.23 -9.73 10.29 23.51 0.24 -9.49 16 11 C 0.08 3.78 5.85 40.86 0.24 4.02 16 12 C 0.29 14.78 2.83 29.10 0.08 14.86 16 13 H 0.04 2.38 7.34 -2.39 -0.02 2.36 16 14 O -0.57 -29.80 12.59 -148.98 -1.88 -31.68 16 15 C -0.57 -31.09 8.75 25.60 0.22 -30.87 16 16 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 17 C 0.04 1.97 5.40 84.65 0.46 2.43 16 18 N -0.89 -51.23 12.84 21.45 0.28 -50.96 16 19 Si 0.96 42.46 29.54 68.60 2.03 44.49 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 24 H 0.07 2.53 7.40 -2.39 -0.02 2.51 16 25 H 0.11 2.38 8.10 -2.39 -0.02 2.36 16 26 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 27 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 28 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 29 H 0.14 5.71 7.48 -2.91 -0.02 5.69 16 30 H 0.36 17.04 8.08 -74.05 -0.60 16.44 16 31 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16 Total: -1.00 -65.88 287.96 2.78 -63.10 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.56 Total: 22.25 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 3.54 Total: -24.90 kcal Atomic # 7 Polarization: -69.43 SS G_CDS: -1.39 Total: -70.82 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -1.88 Total: -31.68 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -0.08 Total: -2.43 kcal Total: -65.88 2.78 -63.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259594808.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.184 kcal (2) G-P(sol) polarization free energy of solvation -65.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds