Wall clock time and date at job start Mon Mar 30 2020 06:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36856 * 125.06207 * 2 1 4 4 C 1.34221 * 109.92956 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.50505 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47660 * 144.97138 * 5 4 3 7 7 O 1.42907 * 109.46822 * 24.97158 * 5 4 3 8 8 C 1.50700 * 109.47375 * 264.97491 * 5 4 3 9 9 H 1.08007 * 119.99500 * 359.97438 * 8 5 4 10 10 C 1.37878 * 120.00154 * 179.97438 * 8 5 4 11 11 N 1.31512 * 119.99984 * 0.02562 * 10 8 5 12 12 Si 1.86801 * 119.99747 * 179.97438 * 10 8 5 13 13 H 1.48506 * 109.47146 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46936 * 120.00212 * 12 10 8 15 15 H 1.48499 * 109.47085 * 240.00046 * 12 10 8 16 16 C 1.46495 * 106.99533 * 359.97438 * 4 3 2 17 17 C 1.37713 * 125.06427 * 180.02562 * 2 1 3 18 18 C 1.39103 * 133.42306 * 0.02562 * 17 2 1 19 19 C 1.37746 * 119.94248 * 179.97438 * 18 17 2 20 20 C 1.38805 * 120.68619 * 359.97438 * 19 18 17 21 21 C 1.37755 * 120.36870 * 359.97438 * 20 19 18 22 22 Cl 1.73602 * 120.18670 * 179.97438 * 21 20 19 23 23 H 1.09000 * 109.47401 * 269.96893 * 1 2 3 24 24 H 1.08997 * 109.47334 * 29.97455 * 1 2 3 25 25 H 1.09007 * 109.47271 * 149.97894 * 1 2 3 26 26 H 1.07996 * 125.03487 * 0.02562 * 3 2 1 27 27 H 0.96700 * 114.00272 * 300.00162 * 7 5 4 28 28 H 0.96994 * 119.99935 * 180.02562 * 11 10 8 29 29 H 1.07995 * 120.02790 * 359.97438 * 18 17 2 30 30 H 1.08003 * 119.65703 * 180.27960 * 19 18 17 31 31 H 1.08002 * 119.81071 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2511 1.1202 0.0000 4 6 3.5468 0.7698 -0.0006 5 6 4.7284 1.7051 -0.0002 6 1 5.5358 1.2705 0.5891 7 8 4.3440 2.9580 0.5696 8 6 5.1992 1.9203 -1.4155 9 1 4.6936 1.4285 -2.2334 10 6 6.2754 2.7449 -1.6662 11 7 6.8914 3.3433 -0.6702 12 14 6.8594 3.0110 -3.4205 13 1 6.0045 2.2303 -4.3506 14 1 6.7687 4.4541 -3.7589 15 1 8.2688 2.5607 -3.5468 16 6 3.5944 -0.6944 -0.0003 17 6 2.2561 -1.1272 -0.0005 18 6 1.9785 -2.4902 -0.0016 19 6 3.0108 -3.4022 -0.0024 20 6 4.3320 -2.9765 -0.0027 21 6 4.6304 -1.6316 -0.0027 22 17 6.2844 -1.1045 -0.0024 23 1 -0.3634 -0.0006 1.0276 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5142 26 1 1.8835 2.1357 0.0004 27 1 3.6282 3.4027 0.0953 28 1 7.6483 3.9236 -0.8466 29 1 0.9544 -2.8332 -0.0018 30 1 2.7900 -4.4594 -0.0078 31 1 5.1304 -3.7038 -0.0029 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259625822.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:31 Heat of formation + Delta-G solvation = 6.132181 kcal Electronic energy + Delta-G solvation = -17733.677717 eV Core-core repulsion = 14813.594402 eV Total energy + Delta-G solvation = -2920.083314 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.87582 -36.93026 -35.81286 -35.31286 -32.27490 -32.03446 -29.78857 -28.51532 -27.48052 -25.31133 -22.65708 -22.10193 -21.13059 -18.95567 -16.93863 -16.55585 -16.11139 -15.25870 -15.02058 -14.50707 -14.29584 -14.00251 -13.85446 -13.05475 -12.91482 -12.76130 -12.32357 -12.03784 -11.56193 -11.44333 -11.19699 -10.92608 -10.92034 -10.79566 -10.48467 -10.10514 -9.97660 -9.15248 -8.80020 -8.46235 -8.21325 -7.82161 -6.91765 -5.89108 -4.05435 1.39357 1.88646 2.84077 3.19957 3.29645 3.33129 3.41399 3.46914 4.17036 4.50296 4.88924 5.01707 5.22603 5.26026 5.34663 5.36933 5.45152 5.48037 5.76879 5.96350 5.99793 6.26862 6.46802 6.57065 6.68943 6.79990 7.03810 7.23863 7.56414 7.71603 7.91519 8.01543 8.28498 8.95757 9.42174 9.68175 11.13691 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.019532 B = 0.008177 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.206765 B = 3423.521621 C = 4203.164911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.492 5.492 3 C 0.019 3.981 4 C -0.130 4.130 5 C 0.285 3.715 6 H 0.077 0.923 7 O -0.561 6.561 8 C -0.543 4.543 9 H 0.054 0.946 10 C 0.080 3.920 11 N -0.861 5.861 12 Si 0.883 3.117 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.283 1.283 16 C -0.096 4.096 17 C 0.107 3.893 18 C -0.139 4.139 19 C -0.095 4.095 20 C -0.160 4.160 21 C 0.028 3.972 22 Cl -0.047 7.047 23 H 0.063 0.937 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.165 0.835 27 H 0.341 0.659 28 H 0.258 0.742 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.940 -9.933 1.450 14.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.177 5.177 3 C -0.102 4.102 4 C -0.136 4.136 5 C 0.227 3.773 6 H 0.095 0.905 7 O -0.364 6.364 8 C -0.581 4.581 9 H 0.072 0.928 10 C -0.125 4.125 11 N -0.498 5.498 12 Si 0.710 3.290 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.209 1.209 16 C -0.102 4.102 17 C -0.001 4.001 18 C -0.160 4.160 19 C -0.114 4.114 20 C -0.180 4.180 21 C 0.001 3.999 22 Cl -0.018 7.018 23 H 0.081 0.919 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.182 0.818 27 H 0.185 0.815 28 H 0.068 0.932 29 H 0.133 0.867 30 H 0.144 0.856 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.516 -9.848 1.941 14.537 hybrid contribution -0.073 0.291 -1.514 1.543 sum -10.589 -9.557 0.427 14.270 Atomic orbital electron populations 1.21799 0.77939 1.03597 1.02303 1.43664 1.05244 1.04232 1.64589 1.21410 0.89975 0.90456 1.08344 1.22096 0.96182 0.91946 1.03424 1.18077 0.86745 0.78229 0.94270 0.90524 1.86642 1.56758 1.36431 1.56527 1.21470 1.15133 1.29208 0.92328 0.92795 1.24983 0.95816 0.95292 0.96412 1.70079 1.20486 1.28954 1.30233 0.86703 0.78787 0.77804 0.85672 1.19743 1.21037 1.20939 1.18886 0.90741 0.93802 1.06788 1.18101 0.89734 0.88257 1.03998 1.19890 0.99145 0.89185 1.07801 1.20557 0.91425 0.98599 1.00864 1.20679 0.97000 0.93274 1.07040 1.20453 0.85751 0.92613 1.01086 1.98407 1.16507 1.90622 1.96276 0.91893 0.90194 0.90767 0.81812 0.81545 0.93191 0.86663 0.85627 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.91 11.02 59.84 0.66 1.57 16 2 N -0.49 -7.95 3.18 -121.81 -0.39 -8.34 16 3 C 0.02 0.36 10.62 -16.73 -0.18 0.18 16 4 C -0.13 -2.90 5.39 -102.71 -0.55 -3.45 16 5 C 0.28 7.36 2.74 -29.03 -0.08 7.28 16 6 H 0.08 2.18 6.63 -51.93 -0.34 1.84 16 7 O -0.56 -14.46 12.52 -35.23 -0.44 -14.91 16 8 C -0.54 -14.98 8.75 -34.44 -0.30 -15.28 16 9 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 10 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 11 N -0.86 -25.47 12.84 55.43 0.71 -24.76 16 12 Si 0.88 21.62 29.54 -169.99 -5.02 16.60 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 C -0.10 -2.00 6.21 -105.11 -0.65 -2.66 16 17 C 0.11 1.89 6.81 -83.99 -0.57 1.32 16 18 C -0.14 -2.02 9.95 -39.44 -0.39 -2.42 16 19 C -0.09 -1.31 10.01 -39.55 -0.40 -1.71 16 20 C -0.16 -2.55 9.81 -39.55 -0.39 -2.94 16 21 C 0.03 0.56 6.35 -39.21 -0.25 0.31 16 22 Cl -0.05 -0.99 26.87 -51.86 -1.39 -2.39 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.67 8.10 -51.93 -0.42 0.24 16 26 H 0.16 2.61 7.40 -52.49 -0.39 2.22 16 27 H 0.34 7.56 8.09 45.56 0.37 7.93 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 31 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 286.03 15.07 4.31 4.31 Total: -1.00 -32.71 286.03 -7.86 -40.57 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -2.44 Total: 4.55 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -3.20 Total: -15.64 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.32 Total: -33.10 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.44 Total: -14.91 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.39 Total: -2.39 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.71 -7.86 -40.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259625822.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.701 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds