Wall clock time and date at job start Mon Mar 30 2020 06:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36856 * 125.06207 * 2 1 4 4 C 1.34221 * 109.92956 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.50505 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47660 * 144.97138 * 5 4 3 7 7 O 1.42907 * 109.46822 * 24.97158 * 5 4 3 8 8 C 1.50700 * 109.47375 * 264.97491 * 5 4 3 9 9 H 1.08007 * 119.99500 * 359.97438 * 8 5 4 10 10 C 1.37878 * 120.00154 * 179.97438 * 8 5 4 11 11 N 1.31512 * 119.99984 * 0.02562 * 10 8 5 12 12 Si 1.86801 * 119.99747 * 179.97438 * 10 8 5 13 13 H 1.48506 * 109.47146 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46936 * 120.00212 * 12 10 8 15 15 H 1.48499 * 109.47085 * 240.00046 * 12 10 8 16 16 C 1.46495 * 106.99533 * 359.97438 * 4 3 2 17 17 C 1.37713 * 125.06427 * 180.02562 * 2 1 3 18 18 C 1.39103 * 133.42306 * 0.02562 * 17 2 1 19 19 C 1.37746 * 119.94248 * 179.97438 * 18 17 2 20 20 C 1.38805 * 120.68619 * 359.97438 * 19 18 17 21 21 C 1.37755 * 120.36870 * 359.97438 * 20 19 18 22 22 Cl 1.73602 * 120.18670 * 179.97438 * 21 20 19 23 23 H 1.09000 * 109.47401 * 269.96893 * 1 2 3 24 24 H 1.08997 * 109.47334 * 29.97455 * 1 2 3 25 25 H 1.09007 * 109.47271 * 149.97894 * 1 2 3 26 26 H 1.07996 * 125.03487 * 0.02562 * 3 2 1 27 27 H 0.96700 * 114.00272 * 300.00162 * 7 5 4 28 28 H 0.96994 * 119.99935 * 180.02562 * 11 10 8 29 29 H 1.07995 * 120.02790 * 359.97438 * 18 17 2 30 30 H 1.08003 * 119.65703 * 180.27960 * 19 18 17 31 31 H 1.08002 * 119.81071 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2511 1.1202 0.0000 4 6 3.5468 0.7698 -0.0006 5 6 4.7284 1.7051 -0.0002 6 1 5.5358 1.2705 0.5891 7 8 4.3440 2.9580 0.5696 8 6 5.1992 1.9203 -1.4155 9 1 4.6936 1.4285 -2.2334 10 6 6.2754 2.7449 -1.6662 11 7 6.8914 3.3433 -0.6702 12 14 6.8594 3.0110 -3.4205 13 1 6.0045 2.2303 -4.3506 14 1 6.7687 4.4541 -3.7589 15 1 8.2688 2.5607 -3.5468 16 6 3.5944 -0.6944 -0.0003 17 6 2.2561 -1.1272 -0.0005 18 6 1.9785 -2.4902 -0.0016 19 6 3.0108 -3.4022 -0.0024 20 6 4.3320 -2.9765 -0.0027 21 6 4.6304 -1.6316 -0.0027 22 17 6.2844 -1.1045 -0.0024 23 1 -0.3634 -0.0006 1.0276 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5142 26 1 1.8835 2.1357 0.0004 27 1 3.6282 3.4027 0.0953 28 1 7.6483 3.9236 -0.8466 29 1 0.9544 -2.8332 -0.0018 30 1 2.7900 -4.4594 -0.0078 31 1 5.1304 -3.7038 -0.0029 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259625822.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:31 Heat of formation + Delta-G solvation = -15.549180 kcal Electronic energy + Delta-G solvation = -17734.617891 eV Core-core repulsion = 14813.594402 eV Total energy + Delta-G solvation = -2921.023489 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.18108 -38.25009 -37.60462 -36.81813 -34.18847 -33.61125 -30.98395 -29.95177 -29.10203 -26.80777 -24.41091 -23.42457 -22.40140 -20.41490 -18.98333 -17.99417 -17.36519 -16.66071 -16.46082 -16.16225 -16.01067 -15.31701 -15.20894 -14.68648 -14.54361 -14.13175 -13.52636 -13.20267 -13.14370 -12.99195 -12.85729 -12.76976 -12.66264 -12.16710 -12.11130 -11.77859 -11.55779 -11.05843 -10.67694 -10.33354 -10.04684 -9.10796 -8.36529 -7.97665 -6.25653 0.10316 0.64071 1.36850 1.39131 1.45450 1.50263 1.86771 2.01977 2.44595 2.88282 3.19988 3.91051 3.94742 4.00737 4.22161 4.29306 4.46436 4.52126 4.56445 4.71994 4.75217 4.87267 5.03268 5.03701 5.44147 5.49817 5.70441 5.73748 5.78669 6.02431 6.19496 6.28165 6.54427 6.82542 7.41267 7.62138 8.99521 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.019532 B = 0.008177 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.206765 B = 3423.521621 C = 4203.164911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.486 5.486 3 C 0.040 3.960 4 C -0.188 4.188 5 C 0.293 3.707 6 H 0.038 0.962 7 O -0.578 6.578 8 C -0.540 4.540 9 H 0.041 0.959 10 C 0.031 3.969 11 N -0.899 5.899 12 Si 0.944 3.056 13 H -0.270 1.270 14 H -0.275 1.275 15 H -0.282 1.282 16 C -0.135 4.135 17 C 0.094 3.906 18 C -0.125 4.125 19 C -0.087 4.087 20 C -0.152 4.152 21 C -0.010 4.010 22 Cl -0.081 7.081 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.185 0.815 27 H 0.355 0.645 28 H 0.259 0.741 29 H 0.159 0.841 30 H 0.174 0.826 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.982 -11.914 0.661 18.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.170 5.170 3 C -0.084 4.084 4 C -0.195 4.195 5 C 0.236 3.764 6 H 0.056 0.944 7 O -0.382 6.382 8 C -0.578 4.578 9 H 0.059 0.941 10 C -0.170 4.170 11 N -0.537 5.537 12 Si 0.770 3.230 13 H -0.194 1.194 14 H -0.201 1.201 15 H -0.208 1.208 16 C -0.141 4.141 17 C -0.014 4.014 18 C -0.146 4.146 19 C -0.106 4.106 20 C -0.172 4.172 21 C -0.037 4.037 22 Cl -0.052 7.052 23 H 0.099 0.901 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.202 0.798 27 H 0.200 0.800 28 H 0.068 0.932 29 H 0.176 0.824 30 H 0.191 0.809 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.604 -11.851 1.145 18.078 hybrid contribution 0.718 0.796 -1.220 1.624 sum -12.886 -11.055 -0.075 16.978 Atomic orbital electron populations 1.22220 0.74272 1.05720 1.04149 1.43942 1.07196 1.02914 1.62931 1.21627 0.89352 0.92089 1.05352 1.21691 0.96399 0.92713 1.08653 1.17609 0.87825 0.78698 0.92316 0.94436 1.86559 1.57586 1.37105 1.56974 1.21620 1.14814 1.28310 0.93075 0.94079 1.25712 0.96024 0.95247 1.00054 1.70203 1.21200 1.30066 1.32251 0.85744 0.78097 0.78008 0.81196 1.19405 1.20064 1.20838 1.19168 0.92921 0.93375 1.08602 1.18479 0.88587 0.89919 1.04413 1.20430 1.01533 0.87532 1.05075 1.21120 0.89904 1.00924 0.98649 1.21077 0.99086 0.91969 1.05040 1.20775 0.84204 0.94160 1.04595 1.98379 1.19011 1.91150 1.96697 0.90092 0.88487 0.88397 0.79773 0.80038 0.93228 0.82354 0.80887 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 11.02 127.77 1.41 2.68 16 2 N -0.49 -14.41 3.18 -539.29 -1.71 -16.12 16 3 C 0.04 1.45 10.62 82.99 0.88 2.33 16 4 C -0.19 -8.59 5.39 -18.63 -0.10 -8.69 16 5 C 0.29 15.92 2.74 29.10 0.08 16.00 16 6 H 0.04 2.31 6.63 -2.39 -0.02 2.30 16 7 O -0.58 -31.00 12.52 -148.98 -1.87 -32.87 16 8 C -0.54 -30.91 8.75 25.60 0.22 -30.68 16 9 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 10 C 0.03 1.80 5.40 84.66 0.46 2.26 16 11 N -0.90 -55.16 12.84 21.45 0.28 -54.88 16 12 Si 0.94 45.44 29.54 68.60 2.03 47.47 16 13 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 14 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 15 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 16 C -0.13 -5.67 6.21 -20.18 -0.13 -5.79 16 17 C 0.09 3.10 6.81 39.02 0.27 3.37 16 18 C -0.13 -3.06 9.95 22.36 0.22 -2.84 16 19 C -0.09 -2.01 10.01 22.29 0.22 -1.79 16 20 C -0.15 -4.57 9.81 22.29 0.22 -4.35 16 21 C -0.01 -0.41 6.35 22.51 0.14 -0.27 16 22 Cl -0.08 -3.60 26.87 -2.72 -0.07 -3.67 16 23 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.10 1.21 8.10 -2.38 -0.02 1.19 16 26 H 0.19 5.65 7.40 -2.91 -0.02 5.63 16 27 H 0.35 16.18 8.09 -74.06 -0.60 15.59 16 28 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 30 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -75.48 286.03 3.11 -72.37 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.56 Total: 15.49 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 3.90 Total: -27.78 kcal Atomic # 7 Polarization: -69.57 SS G_CDS: -1.44 Total: -71.01 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -1.87 Total: -32.87 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 17 Polarization: -3.60 SS G_CDS: -0.07 Total: -3.67 kcal Total: -75.48 3.11 -72.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259625822.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.820 kcal (2) G-P(sol) polarization free energy of solvation -75.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds