Wall clock time and date at job start Mon Mar 30 2020 06:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36855 * 125.06376 * 2 1 4 4 C 1.34223 * 109.93155 * 179.84527 * 3 2 1 5 5 C 1.50700 * 126.50791 * 180.14998 * 4 3 2 6 6 H 1.08991 * 109.47781 * 215.29960 * 5 4 3 7 7 O 1.42904 * 109.47004 * 335.30242 * 5 4 3 8 8 C 1.50696 * 109.46961 * 95.29459 * 5 4 3 9 9 H 1.08002 * 119.99941 * 0.02562 * 8 5 4 10 10 C 1.37875 * 120.00294 * 180.02562 * 8 5 4 11 11 N 1.31517 * 120.00378 * 180.02562 * 10 8 5 12 12 Si 1.86805 * 119.99622 * 0.02562 * 10 8 5 13 13 H 1.48505 * 109.47138 * 90.00014 * 12 10 8 14 14 H 1.48507 * 109.46829 * 209.99597 * 12 10 8 15 15 H 1.48495 * 109.47221 * 329.99939 * 12 10 8 16 16 C 1.46496 * 106.99393 * 0.40218 * 4 3 2 17 17 C 1.37709 * 125.06417 * 180.30248 * 2 1 3 18 18 C 1.39103 * 133.42269 * 359.95604 * 17 2 1 19 19 C 1.37754 * 119.94450 * 180.02562 * 18 17 2 20 20 C 1.38800 * 120.68252 * 0.02562 * 19 18 17 21 21 C 1.37760 * 120.37254 * 359.96827 * 20 19 18 22 22 Cl 1.73597 * 120.18729 * 180.02562 * 21 20 19 23 23 H 1.09002 * 109.47391 * 269.69551 * 1 2 3 24 24 H 1.09001 * 109.46813 * 149.69607 * 1 2 3 25 25 H 1.09004 * 109.47041 * 29.69734 * 1 2 3 26 26 H 1.08000 * 125.03232 * 0.02562 * 3 2 1 27 27 H 0.96698 * 114.00367 * 59.99288 * 7 5 4 28 28 H 0.97001 * 119.99564 * 180.02562 * 11 10 8 29 29 H 1.08000 * 120.02892 * 0.02817 * 18 17 2 30 30 H 1.08002 * 119.66189 * 179.97438 * 19 18 17 31 31 H 1.08002 * 119.81272 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.1202 0.0000 4 6 3.5469 0.7698 0.0034 5 6 4.7286 1.7050 0.0077 6 1 5.5357 1.2736 -0.5841 7 8 4.3440 2.9610 -0.5551 8 6 5.1997 1.9126 1.4240 9 1 4.6942 1.4165 2.2394 10 6 6.2759 2.7357 1.6790 11 7 6.6874 2.9165 2.9150 12 14 7.1497 3.5944 0.2687 13 1 6.5152 4.9144 0.0235 14 1 8.5798 3.7898 0.6181 15 1 7.0488 2.7615 -0.9566 16 6 3.5945 -0.6944 -0.0040 17 6 2.2561 -1.1271 -0.0060 18 6 1.9785 -2.4902 -0.0124 19 6 3.0109 -3.4022 -0.0169 20 6 4.3320 -2.9765 -0.0146 21 6 4.6305 -1.6316 -0.0084 22 17 6.2845 -1.1046 -0.0062 23 1 -0.3634 -0.0055 1.0276 24 1 -0.3633 -0.8873 -0.5186 25 1 -0.3633 0.8927 -0.5091 26 1 1.8835 2.1357 0.0004 27 1 3.6284 3.4032 -0.0782 28 1 7.4444 3.4959 3.0942 29 1 0.9544 -2.8331 -0.0138 30 1 2.7901 -4.4594 -0.0215 31 1 5.1305 -3.7037 -0.0178 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259625827.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:33 Heat of formation + Delta-G solvation = -14.127569 kcal Electronic energy + Delta-G solvation = -17781.847310 eV Core-core repulsion = 14860.885467 eV Total energy + Delta-G solvation = -2920.961843 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.23014 -38.34336 -37.87516 -36.89216 -34.39413 -33.69638 -31.00986 -30.14693 -29.39460 -26.89493 -24.23469 -23.44489 -22.43331 -20.49736 -19.39930 -18.04302 -17.43292 -16.88456 -16.53750 -16.18502 -15.89440 -15.40180 -15.32376 -14.86105 -14.83430 -14.17129 -13.74173 -13.45008 -13.20804 -13.14347 -12.87116 -12.74922 -12.71101 -12.22045 -11.97756 -11.77143 -11.62058 -11.19136 -10.81460 -10.63584 -10.10923 -9.13623 -8.34902 -8.27456 -6.39770 0.07475 0.61712 1.37730 1.39348 1.42222 1.56344 1.81250 1.99129 2.39732 2.84958 3.03373 3.85994 3.91035 3.97515 4.07754 4.23760 4.30512 4.49213 4.53637 4.67259 4.75213 4.82640 4.88821 4.93455 5.34898 5.47903 5.52081 5.60036 5.71861 5.87865 6.15434 6.25240 6.49737 6.70216 7.17713 7.37840 8.84897 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.020997 B = 0.008525 C = 0.006727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.220910 B = 3283.712344 C = 4161.397293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.486 5.486 3 C 0.049 3.951 4 C -0.189 4.189 5 C 0.264 3.736 6 H 0.056 0.944 7 O -0.586 6.586 8 C -0.518 4.518 9 H 0.030 0.970 10 C 0.035 3.965 11 N -0.938 5.938 12 Si 0.957 3.043 13 H -0.268 1.268 14 H -0.303 1.303 15 H -0.268 1.268 16 C -0.133 4.133 17 C 0.093 3.907 18 C -0.124 4.124 19 C -0.087 4.087 20 C -0.150 4.150 21 C -0.011 4.011 22 Cl -0.085 7.085 23 H 0.076 0.924 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.191 0.809 27 H 0.373 0.627 28 H 0.265 0.735 29 H 0.160 0.840 30 H 0.174 0.826 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.030 -10.781 -7.999 19.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.169 5.169 3 C -0.076 4.076 4 C -0.195 4.195 5 C 0.206 3.794 6 H 0.073 0.927 7 O -0.394 6.394 8 C -0.556 4.556 9 H 0.048 0.952 10 C -0.164 4.164 11 N -0.578 5.578 12 Si 0.785 3.215 13 H -0.193 1.193 14 H -0.232 1.232 15 H -0.193 1.193 16 C -0.139 4.139 17 C -0.014 4.014 18 C -0.144 4.144 19 C -0.106 4.106 20 C -0.170 4.170 21 C -0.038 4.038 22 Cl -0.056 7.056 23 H 0.095 0.905 24 H 0.118 0.882 25 H 0.119 0.881 26 H 0.208 0.792 27 H 0.222 0.778 28 H 0.074 0.926 29 H 0.177 0.823 30 H 0.191 0.809 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.696 -10.750 -8.322 19.297 hybrid contribution 0.786 0.925 0.399 1.278 sum -12.910 -9.825 -7.923 18.054 Atomic orbital electron populations 1.22241 0.74136 1.05980 1.04056 1.43953 1.07283 1.02928 1.62722 1.21691 0.89198 0.92331 1.04362 1.21232 0.95914 0.92434 1.09961 1.18049 0.89869 0.79607 0.91909 0.92663 1.86359 1.58152 1.36355 1.58486 1.21433 1.14367 1.27457 0.92381 0.95187 1.25645 0.96912 0.96516 0.97350 1.70064 1.27482 1.39196 1.21079 0.85547 0.75871 0.79963 0.80119 1.19321 1.23155 1.19303 1.19136 0.92935 0.93338 1.08464 1.18468 0.88542 0.89959 1.04454 1.20447 1.01572 0.87570 1.04832 1.21130 0.89898 1.00977 0.98640 1.21089 0.99121 0.92015 1.04739 1.20742 0.83978 0.94212 1.04859 1.98366 1.19244 1.91217 1.96737 0.90522 0.88197 0.88055 0.79179 0.77828 0.92561 0.82292 0.80869 0.83597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 11.03 127.77 1.41 2.60 16 2 N -0.49 -13.77 3.18 -539.27 -1.71 -15.49 16 3 C 0.05 1.66 10.62 82.99 0.88 2.54 16 4 C -0.19 -8.20 5.39 -18.63 -0.10 -8.30 16 5 C 0.26 13.18 2.21 29.10 0.06 13.24 16 6 H 0.06 2.99 5.69 -2.39 -0.01 2.98 16 7 O -0.59 -26.79 10.82 -148.98 -1.61 -28.40 16 8 C -0.52 -30.23 9.33 25.60 0.24 -29.99 16 9 H 0.03 1.97 7.98 -2.91 -0.02 1.94 16 10 C 0.04 2.10 5.47 84.65 0.46 2.56 16 11 N -0.94 -59.63 13.96 21.45 0.30 -59.33 16 12 Si 0.96 49.63 26.18 68.60 1.80 51.43 16 13 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 14 H -0.30 -15.50 7.11 99.48 0.71 -14.79 16 15 H -0.27 -13.90 6.54 99.48 0.65 -13.25 16 16 C -0.13 -5.43 6.21 -20.18 -0.13 -5.56 16 17 C 0.09 3.00 6.81 39.02 0.27 3.27 16 18 C -0.12 -2.95 9.95 22.36 0.22 -2.73 16 19 C -0.09 -1.99 10.01 22.29 0.22 -1.77 16 20 C -0.15 -4.44 9.81 22.29 0.22 -4.22 16 21 C -0.01 -0.42 6.35 22.51 0.14 -0.28 16 22 Cl -0.08 -3.64 26.87 -2.72 -0.07 -3.72 16 23 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.10 1.11 8.10 -2.39 -0.02 1.09 16 25 H 0.10 1.20 8.13 -2.38 -0.02 1.18 16 26 H 0.19 5.24 7.39 -2.91 -0.02 5.21 16 27 H 0.37 14.28 8.09 -74.06 -0.60 13.68 16 28 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 29 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 31 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -77.29 280.96 3.11 -74.18 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.51 Total: 9.96 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 3.90 Total: -28.64 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -1.42 Total: -74.82 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -1.61 Total: -28.40 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 1.80 Total: 51.43 kcal Atomic # 17 Polarization: -3.64 SS G_CDS: -0.07 Total: -3.72 kcal Total: -77.29 3.11 -74.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259625827.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.053 kcal (2) G-P(sol) polarization free energy of solvation -77.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds