Wall clock time and date at job start Mon Mar 30 2020 06:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36866 * 125.06525 * 2 1 4 4 C 1.34232 * 109.92730 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.49658 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46930 * 144.97777 * 5 4 3 7 7 O 1.42891 * 109.47283 * 24.97801 * 5 4 3 8 8 C 1.50699 * 109.47260 * 264.97149 * 5 4 3 9 9 H 1.08003 * 119.99669 * 0.02562 * 8 5 4 10 10 C 1.37876 * 120.00217 * 180.02562 * 8 5 4 11 11 N 1.31517 * 119.99838 * 0.02562 * 10 8 5 12 12 Si 1.86796 * 120.00128 * 180.02562 * 10 8 5 13 13 H 1.48500 * 109.46992 * 90.00184 * 12 10 8 14 14 H 1.48498 * 109.47029 * 210.00267 * 12 10 8 15 15 H 1.48499 * 109.47046 * 330.00384 * 12 10 8 16 16 C 1.46504 * 106.99893 * 0.02562 * 4 3 2 17 17 C 1.39626 * 134.01420 * 180.02562 * 16 4 3 18 18 C 1.36619 * 119.78690 * 179.97438 * 17 16 4 19 19 C 1.38929 * 120.51141 * 359.97438 * 18 17 16 20 20 Cl 1.73605 * 119.67727 * 179.97438 * 19 18 17 21 21 C 1.37849 * 120.64066 * 0.02562 * 19 18 17 22 22 C 1.37693 * 125.06641 * 179.70395 * 2 1 3 23 23 H 1.09002 * 109.47391 * 90.02064 * 1 2 3 24 24 H 1.09001 * 109.46813 * 330.02121 * 1 2 3 25 25 H 1.09004 * 109.47041 * 210.02248 * 1 2 3 26 26 H 1.07997 * 125.03649 * 359.96904 * 3 2 1 27 27 H 0.96695 * 114.00369 * 299.99739 * 7 5 4 28 28 H 0.97001 * 119.99935 * 180.02562 * 11 10 8 29 29 H 1.08002 * 120.10581 * 359.97438 * 17 16 4 30 30 H 1.07999 * 119.74244 * 180.02562 * 18 17 16 31 31 H 1.08004 * 120.11481 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.1202 0.0000 4 6 3.5470 0.7697 0.0006 5 6 4.7286 1.7051 0.0013 6 1 5.5355 1.2706 0.5914 7 8 4.3439 2.9581 0.5702 8 6 5.2005 1.9195 -1.4138 9 1 4.6950 1.4279 -2.2319 10 6 6.2775 2.7431 -1.6640 11 7 6.8933 3.3413 -0.6677 12 14 6.8619 3.0094 -3.4181 13 1 6.1517 4.1741 -4.0050 14 1 8.3239 3.2695 -3.4186 15 1 6.5746 1.7964 -4.2251 16 6 3.5946 -0.6946 0.0003 17 6 4.6297 -1.6316 0.0011 18 6 4.3372 -2.9661 0.0011 19 6 3.0169 -3.3988 0.0009 20 17 2.6699 -5.0998 0.0002 21 6 1.9800 -2.4905 0.0001 22 6 2.2561 -1.1270 0.0058 23 1 -0.3634 -0.0004 -1.0277 24 1 -0.3633 0.8902 0.5135 25 1 -0.3633 -0.8898 0.5142 26 1 1.8837 2.1357 -0.0005 27 1 3.6285 3.4026 0.0952 28 1 7.6508 3.9211 -0.8438 29 1 5.6584 -1.3025 0.0017 30 1 5.1384 -3.6903 0.0021 31 1 0.9568 -2.8363 0.0004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259625973.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:34 Heat of formation + Delta-G solvation = -16.734605 kcal Electronic energy + Delta-G solvation = -17358.726750 eV Core-core repulsion = 14437.651858 eV Total energy + Delta-G solvation = -2921.074892 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.24860 -38.53179 -37.58163 -36.95295 -34.24813 -33.64256 -31.36622 -29.86311 -29.12436 -26.85521 -24.48411 -23.59405 -22.38975 -20.44601 -19.03863 -18.04028 -17.49682 -16.79886 -16.61802 -16.18838 -16.05111 -15.27368 -15.03342 -14.73925 -14.57971 -14.21499 -13.87136 -13.37422 -13.25039 -13.11502 -12.83480 -12.79380 -12.57561 -12.31270 -12.09489 -11.80833 -11.66205 -11.22425 -10.76233 -10.44430 -10.20715 -9.06458 -8.46553 -8.03950 -6.35020 0.05082 0.55113 1.10191 1.40303 1.41865 1.52469 1.81165 2.03066 2.42711 2.84268 3.14011 3.75228 3.93061 3.98991 4.15086 4.20946 4.42513 4.49693 4.53109 4.61411 4.73175 4.77843 4.94739 4.98586 5.24842 5.48426 5.64962 5.67995 5.74312 5.95236 6.12312 6.24007 6.48385 6.75537 7.35621 7.57025 8.93471 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021520 B = 0.005810 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.790349 B = 4818.144943 C = 5566.497124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.484 5.484 3 C 0.049 3.951 4 C -0.190 4.190 5 C 0.298 3.702 6 H 0.022 0.978 7 O -0.575 6.575 8 C -0.564 4.564 9 H 0.048 0.952 10 C 0.030 3.970 11 N -0.899 5.899 12 Si 0.955 3.045 13 H -0.270 1.270 14 H -0.282 1.282 15 H -0.271 1.271 16 C -0.126 4.126 17 C -0.067 4.067 18 C -0.145 4.145 19 C -0.021 4.021 20 Cl -0.061 7.061 21 C -0.117 4.117 22 C 0.093 3.907 23 H 0.079 0.921 24 H 0.102 0.898 25 H 0.095 0.905 26 H 0.189 0.811 27 H 0.358 0.642 28 H 0.262 0.738 29 H 0.118 0.882 30 H 0.147 0.853 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.522 -10.865 0.624 17.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.168 5.168 3 C -0.075 4.075 4 C -0.197 4.197 5 C 0.240 3.760 6 H 0.039 0.961 7 O -0.379 6.379 8 C -0.602 4.602 9 H 0.067 0.933 10 C -0.173 4.173 11 N -0.537 5.537 12 Si 0.780 3.220 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.196 1.196 16 C -0.131 4.131 17 C -0.086 4.086 18 C -0.165 4.165 19 C -0.049 4.049 20 Cl -0.032 7.032 21 C -0.138 4.138 22 C -0.015 4.015 23 H 0.098 0.902 24 H 0.120 0.880 25 H 0.113 0.887 26 H 0.206 0.794 27 H 0.203 0.797 28 H 0.071 0.929 29 H 0.136 0.864 30 H 0.165 0.835 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.326 -11.012 1.114 17.323 hybrid contribution 0.392 0.390 -1.185 1.308 sum -12.934 -10.622 -0.071 16.737 Atomic orbital electron populations 1.22248 0.74384 1.05817 1.04164 1.43926 1.07196 1.02853 1.62794 1.21685 0.89276 0.91968 1.04604 1.21635 0.96188 0.92831 1.09021 1.17390 0.87552 0.79157 0.91858 0.96060 1.86532 1.57753 1.36747 1.56858 1.21796 1.15438 1.29486 0.93431 0.93332 1.25831 0.95845 0.94845 1.00749 1.70199 1.21116 1.29662 1.32708 0.85625 0.77507 0.78636 0.80221 1.19510 1.20709 1.19620 1.19481 0.93487 0.93494 1.06647 1.20364 0.98500 0.92070 0.97667 1.20574 0.95491 0.95188 1.05218 1.20382 0.93832 0.84754 1.05921 1.98336 1.95367 1.12494 1.97046 1.19842 0.99782 0.87851 1.06344 1.18151 0.89792 0.88851 1.04676 0.90238 0.87951 0.88686 0.79398 0.79683 0.92884 0.86354 0.83515 0.82925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.26 11.03 127.77 1.41 2.67 16 2 N -0.48 -14.23 3.18 -539.25 -1.71 -15.94 16 3 C 0.05 1.70 10.62 82.99 0.88 2.58 16 4 C -0.19 -8.36 5.39 -18.62 -0.10 -8.46 16 5 C 0.30 15.74 3.35 29.10 0.10 15.84 16 6 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 7 O -0.57 -29.64 12.52 -148.98 -1.87 -31.51 16 8 C -0.56 -31.48 8.75 25.60 0.22 -31.25 16 9 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 10 C 0.03 1.66 5.40 84.65 0.46 2.12 16 11 N -0.90 -53.71 12.84 21.45 0.28 -53.43 16 12 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 13 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 16 C -0.13 -5.13 6.35 -20.20 -0.13 -5.26 16 17 C -0.07 -2.56 10.05 22.23 0.22 -2.34 16 18 C -0.14 -4.50 9.75 22.06 0.21 -4.29 16 19 C -0.02 -0.60 6.31 22.34 0.14 -0.45 16 20 Cl -0.06 -1.41 28.93 -2.72 -0.08 -1.49 16 21 C -0.12 -3.26 9.73 22.39 0.22 -3.04 16 22 C 0.09 3.12 6.81 39.03 0.27 3.38 16 23 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.10 1.33 8.14 -2.39 -0.02 1.32 16 25 H 0.09 1.27 8.10 -2.38 -0.02 1.25 16 26 H 0.19 5.42 7.40 -2.91 -0.02 5.39 16 27 H 0.36 15.60 8.09 -74.06 -0.60 15.00 16 28 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 30 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 31 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -69.02 290.09 3.11 -65.92 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.56 Total: 19.17 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: 3.90 Total: -28.50 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -1.44 Total: -69.38 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -1.87 Total: -31.51 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -69.02 3.11 -65.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259625973.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.181 kcal (2) G-P(sol) polarization free energy of solvation -69.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds