Wall clock time and date at job start Mon Mar 30 2020 06:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36862 * 125.06589 * 2 1 4 4 C 1.34221 * 109.92884 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.49813 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.46786 * 214.99946 * 5 4 3 7 7 O 1.42902 * 109.47081 * 334.99318 * 5 4 3 8 8 C 1.50693 * 109.47249 * 95.00085 * 5 4 3 9 9 H 1.08003 * 120.00162 * 359.97438 * 8 5 4 10 10 C 1.37876 * 120.00009 * 179.97438 * 8 5 4 11 11 N 1.31516 * 120.00293 * 359.97438 * 10 8 5 12 12 Si 1.86806 * 120.00022 * 179.97438 * 10 8 5 13 13 H 1.48498 * 109.47081 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46924 * 120.00022 * 12 10 8 15 15 H 1.48502 * 109.47191 * 240.00080 * 12 10 8 16 16 C 1.46510 * 107.00188 * 359.97438 * 4 3 2 17 17 C 1.39634 * 134.01707 * 179.97438 * 16 4 3 18 18 C 1.36609 * 119.78414 * 180.02562 * 17 16 4 19 19 C 1.38943 * 120.51569 * 359.68264 * 18 17 16 20 20 Cl 1.73596 * 119.68368 * 180.30178 * 19 18 17 21 21 C 1.37853 * 120.63468 * 0.62249 * 19 18 17 22 22 C 1.37692 * 125.06697 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.46775 * 269.99989 * 1 2 3 24 24 H 1.08993 * 109.47502 * 29.99840 * 1 2 3 25 25 H 1.09005 * 109.46922 * 150.00397 * 1 2 3 26 26 H 1.08008 * 125.03471 * 359.96277 * 3 2 1 27 27 H 0.96697 * 113.99501 * 60.00898 * 7 5 4 28 28 H 0.96999 * 120.00156 * 179.97438 * 11 10 8 29 29 H 1.08000 * 120.10556 * 359.97438 * 17 16 4 30 30 H 1.07990 * 119.74233 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.11870 * 179.68252 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.1202 0.0000 4 6 3.5470 0.7697 -0.0006 5 6 4.7286 1.7051 -0.0002 6 1 5.5358 1.2709 -0.5902 7 8 4.3441 2.9585 -0.5688 8 6 5.1997 1.9188 1.4151 9 1 4.6938 1.4268 2.2328 10 6 6.2765 2.7423 1.6664 11 7 6.8929 3.3410 0.6707 12 14 6.8601 3.0078 3.4210 13 1 6.0049 2.2269 4.3505 14 1 8.2691 2.5561 3.5477 15 1 6.7706 4.4510 3.7594 16 6 3.5946 -0.6946 -0.0003 17 6 4.6298 -1.6317 -0.0011 18 6 4.3372 -2.9661 -0.0011 19 6 3.0169 -3.3988 0.0063 20 17 2.6698 -5.0997 0.0141 21 6 1.9800 -2.4906 0.0009 22 6 2.2561 -1.1270 -0.0005 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8901 -0.5138 26 1 1.8837 2.1358 -0.0006 27 1 3.6284 3.4027 -0.0939 28 1 7.6503 3.9206 0.8475 29 1 5.6585 -1.3026 -0.0026 30 1 5.1384 -3.6902 -0.0013 31 1 0.9567 -2.8362 0.0015 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259625975.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:35 Heat of formation + Delta-G solvation = -16.790740 kcal Electronic energy + Delta-G solvation = -17358.956242 eV Core-core repulsion = 14437.878915 eV Total energy + Delta-G solvation = -2921.077327 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.24835 -38.53127 -37.58130 -36.95283 -34.24969 -33.64220 -31.36625 -29.86307 -29.12534 -26.85672 -24.48491 -23.59367 -22.38966 -20.44584 -19.04075 -18.04095 -17.49675 -16.79900 -16.62037 -16.18851 -16.05046 -15.27363 -15.03335 -14.73914 -14.58044 -14.21503 -13.87165 -13.37713 -13.24815 -13.11910 -12.86100 -12.77638 -12.57782 -12.31369 -12.07896 -11.80831 -11.66156 -11.22489 -10.76491 -10.44429 -10.20749 -9.06394 -8.46635 -8.04151 -6.35177 0.05140 0.55204 1.10268 1.39516 1.41445 1.53273 1.81212 2.03129 2.42515 2.84314 3.13812 3.75283 3.93073 3.99012 4.15107 4.20976 4.42512 4.49713 4.53101 4.61459 4.73163 4.77884 4.94743 4.98626 5.24893 5.48464 5.64994 5.68123 5.74371 5.95250 6.12231 6.24044 6.48408 6.75659 7.35544 7.56940 8.93416 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021498 B = 0.005813 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.123238 B = 4815.434935 C = 5564.362830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.484 5.484 3 C 0.049 3.951 4 C -0.190 4.190 5 C 0.298 3.702 6 H 0.022 0.978 7 O -0.575 6.575 8 C -0.562 4.562 9 H 0.048 0.952 10 C 0.029 3.971 11 N -0.900 5.900 12 Si 0.955 3.045 13 H -0.269 1.269 14 H -0.279 1.279 15 H -0.275 1.275 16 C -0.126 4.126 17 C -0.067 4.067 18 C -0.145 4.145 19 C -0.021 4.021 20 Cl -0.061 7.061 21 C -0.117 4.117 22 C 0.093 3.907 23 H 0.079 0.921 24 H 0.102 0.898 25 H 0.095 0.905 26 H 0.189 0.811 27 H 0.358 0.642 28 H 0.262 0.738 29 H 0.119 0.881 30 H 0.147 0.853 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.503 -10.885 -0.633 17.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.168 5.168 3 C -0.075 4.075 4 C -0.197 4.197 5 C 0.240 3.760 6 H 0.039 0.961 7 O -0.379 6.379 8 C -0.600 4.600 9 H 0.067 0.933 10 C -0.173 4.173 11 N -0.537 5.537 12 Si 0.780 3.220 13 H -0.194 1.194 14 H -0.205 1.205 15 H -0.201 1.201 16 C -0.131 4.131 17 C -0.086 4.086 18 C -0.165 4.165 19 C -0.049 4.049 20 Cl -0.032 7.032 21 C -0.138 4.138 22 C -0.015 4.015 23 H 0.097 0.903 24 H 0.121 0.879 25 H 0.113 0.887 26 H 0.206 0.794 27 H 0.203 0.797 28 H 0.071 0.929 29 H 0.137 0.863 30 H 0.165 0.835 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.310 -11.032 -1.123 17.324 hybrid contribution 0.397 0.393 1.185 1.310 sum -12.913 -10.639 0.062 16.732 Atomic orbital electron populations 1.22246 0.74387 1.05823 1.04154 1.43926 1.07196 1.02855 1.62797 1.21684 0.89282 0.91971 1.04608 1.21633 0.96187 0.92835 1.09019 1.17397 0.87561 0.79154 0.91873 0.96054 1.86536 1.57736 1.36734 1.56884 1.21820 1.15382 1.29402 0.93424 0.93343 1.25831 0.95865 0.94842 1.00745 1.70204 1.21093 1.29733 1.32682 0.85573 0.78120 0.78052 0.80211 1.19388 1.20471 1.20067 1.19483 0.93488 0.93490 1.06655 1.20362 0.98499 0.92062 0.97659 1.20574 0.95484 0.95191 1.05220 1.20386 0.93835 0.84754 1.05915 1.98335 1.95365 1.12496 1.97042 1.19843 0.99782 0.87851 1.06350 1.18151 0.89798 0.88852 1.04676 0.90260 0.87937 0.88684 0.79398 0.79679 0.92883 0.86338 0.83512 0.82932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.26 11.03 127.77 1.41 2.67 16 2 N -0.48 -14.24 3.18 -539.26 -1.71 -15.95 16 3 C 0.05 1.70 10.62 82.99 0.88 2.58 16 4 C -0.19 -8.36 5.39 -18.62 -0.10 -8.46 16 5 C 0.30 15.72 3.35 29.10 0.10 15.82 16 6 H 0.02 1.29 8.14 -2.38 -0.02 1.28 16 7 O -0.57 -29.63 12.52 -148.98 -1.87 -31.50 16 8 C -0.56 -31.41 8.75 25.60 0.22 -31.18 16 9 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 10 C 0.03 1.65 5.40 84.65 0.46 2.10 16 11 N -0.90 -53.70 12.84 21.45 0.28 -53.42 16 12 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 15 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 16 C -0.13 -5.13 6.35 -20.19 -0.13 -5.26 16 17 C -0.07 -2.55 10.05 22.23 0.22 -2.33 16 18 C -0.14 -4.49 9.75 22.06 0.22 -4.28 16 19 C -0.02 -0.60 6.31 22.35 0.14 -0.45 16 20 Cl -0.06 -1.41 28.93 -2.72 -0.08 -1.49 16 21 C -0.12 -3.26 9.73 22.39 0.22 -3.04 16 22 C 0.09 3.12 6.81 39.03 0.27 3.38 16 23 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.10 1.34 8.13 -2.39 -0.02 1.32 16 25 H 0.09 1.27 8.10 -2.38 -0.02 1.25 16 26 H 0.19 5.42 7.40 -2.91 -0.02 5.40 16 27 H 0.36 15.59 8.09 -74.06 -0.60 14.99 16 28 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 29 H 0.12 4.71 8.06 -2.91 -0.02 4.68 16 30 H 0.15 3.83 8.06 -2.92 -0.02 3.80 16 31 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -69.07 290.10 3.11 -65.96 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.56 Total: 19.02 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 3.90 Total: -28.45 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -1.44 Total: -69.38 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -1.87 Total: -31.50 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -69.07 3.11 -65.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259625975.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.172 kcal (2) G-P(sol) polarization free energy of solvation -69.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds